Wall clock time and date at job start Tue Mar 31 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38669 * 120.41899 * 2 1 4 4 C 1.38626 * 118.41968 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.16005 * 0.02562 * 4 3 2 6 6 N 1.31852 * 120.76368 * 359.97438 * 5 4 3 7 7 C 1.31878 * 121.72587 * 359.70997 * 6 5 4 8 8 C 1.50706 * 119.62006 * 180.30718 * 7 6 5 9 9 C 1.52995 * 109.47126 * 270.27352 * 8 7 6 10 10 C 1.53004 * 109.46937 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99978 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.47638 * 119.99831 * 179.97438 * 12 11 10 15 15 C 1.40008 * 119.89776 * 359.72048 * 14 12 11 16 16 C 1.36320 * 120.10778 * 179.75809 * 15 14 12 17 17 C 1.40894 * 119.88987 * 0.51727 * 16 15 14 18 18 C 1.41103 * 120.10618 * 179.71621 * 17 16 15 19 19 H 1.07999 * 120.00392 * 204.65682 * 18 17 16 20 20 C 1.40229 * 119.99844 * 24.64868 * 18 17 16 21 21 N 1.30651 * 119.99704 * 17.87116 * 20 18 17 22 22 Si 1.86799 * 120.00320 * 197.86280 * 20 18 17 23 23 H 1.48503 * 109.46858 * 60.00562 * 22 20 18 24 24 H 1.48494 * 109.47308 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47096 * 300.00943 * 22 20 18 26 26 C 1.40888 * 119.79197 * 359.73964 * 17 16 15 27 27 C 1.36317 * 119.89419 * 359.97438 * 26 17 16 28 28 H 1.08990 * 109.46761 * 90.00058 * 1 2 3 29 29 H 1.09004 * 109.46992 * 330.00236 * 1 2 3 30 30 H 1.08996 * 109.47036 * 210.00874 * 1 2 3 31 31 H 1.08004 * 120.79052 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.42294 * 179.97438 * 4 3 2 33 33 H 1.08007 * 119.61589 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.46694 * 30.27208 * 8 7 6 35 35 H 1.08997 * 109.46852 * 150.26959 * 8 7 6 36 36 H 1.09002 * 109.46819 * 299.99571 * 9 8 7 37 37 H 1.08997 * 109.47576 * 60.00050 * 9 8 7 38 38 H 1.08996 * 109.47003 * 299.99930 * 10 9 8 39 39 H 1.08997 * 109.46732 * 59.99796 * 10 9 8 40 40 H 0.96998 * 120.00068 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.95022 * 0.02562 * 15 14 12 42 42 H 1.07995 * 120.05784 * 180.23018 * 16 15 14 43 43 H 0.97006 * 119.99676 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.05521 * 179.97438 * 26 17 16 45 45 H 1.08005 * 119.95113 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0005 6 7 3.5254 -1.1997 0.0005 7 6 2.2067 -1.1916 0.0062 8 6 1.4539 -2.4972 0.0129 9 6 1.1988 -2.9463 -1.4273 10 6 0.4351 -4.2720 -1.4204 11 7 0.1904 -4.7017 -2.7994 12 6 -0.4717 -5.8509 -3.0398 13 8 -0.8654 -6.5311 -2.1120 14 6 -0.7188 -6.2836 -4.4295 15 6 -0.2696 -5.4957 -5.4961 16 6 -0.4911 -5.8936 -6.7810 17 6 -1.1829 -7.0945 -7.0347 18 6 -1.4199 -7.5077 -8.3629 19 1 -2.2483 -8.1641 -8.5846 20 6 -0.5799 -7.0658 -9.3951 21 7 0.5981 -6.5756 -9.1140 22 14 -1.1449 -7.1782 -11.1721 23 1 -2.3828 -6.3774 -11.3494 24 1 -0.0814 -6.6505 -12.0640 25 1 -1.4196 -8.5966 -11.5153 26 6 -1.6377 -7.8812 -5.9581 27 6 -1.4064 -7.4780 -4.6766 28 1 -0.3632 0.0000 -1.0276 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8899 0.5140 31 1 1.6890 2.1423 0.0004 32 1 4.1736 2.0591 0.0001 33 1 5.3047 -0.1287 0.0005 34 1 2.0435 -3.2538 0.5304 35 1 0.5015 -2.3648 0.5263 36 1 0.6092 -2.1895 -1.9447 37 1 2.1512 -3.0787 -1.9407 38 1 1.0251 -5.0285 -0.9030 39 1 -0.5172 -4.1400 -0.9069 40 1 0.5042 -4.1589 -3.5395 41 1 0.2571 -4.5733 -5.3006 42 1 -0.1410 -5.2871 -7.6030 43 1 1.1794 -6.2702 -9.8281 44 1 -2.1688 -8.8023 -6.1477 45 1 -1.7550 -8.0802 -3.8506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296531448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:03 Heat of formation + Delta-G solvation = -23.378168 kcal Electronic energy + Delta-G solvation = -25161.334626 eV Core-core repulsion = 21527.516631 eV Total energy + Delta-G solvation = -3633.817995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.32333 -40.73985 -38.93995 -36.93734 -35.66680 -34.93055 -34.24527 -32.42245 -31.44111 -31.26001 -28.59509 -27.89379 -26.77831 -24.11504 -23.36430 -23.04646 -22.63493 -22.12660 -21.11274 -19.36266 -18.42060 -17.80868 -17.49176 -17.21794 -16.71479 -16.48687 -15.83971 -15.74674 -15.44023 -15.34967 -15.17516 -15.01975 -14.46572 -14.15800 -13.97891 -13.87434 -13.69870 -13.64944 -13.51958 -13.27306 -13.20936 -12.92158 -12.83875 -12.67430 -12.63229 -12.35681 -12.06645 -11.78893 -11.67951 -11.36651 -11.11456 -10.74086 -10.61349 -10.32954 -10.05431 -9.68394 -9.57167 -9.40170 -8.79208 -6.48012 0.17426 0.37529 0.44781 1.15274 1.39114 1.44726 1.52476 2.12776 2.18273 2.38793 2.79234 2.85493 3.36141 3.69383 3.71547 3.94003 3.97661 4.08226 4.14396 4.15890 4.22747 4.32784 4.34659 4.45373 4.55695 4.62251 4.66142 4.75849 4.81283 4.85604 4.92411 4.94971 5.03078 5.09328 5.13977 5.16602 5.28849 5.30309 5.32459 5.41769 5.56734 5.60939 5.82648 5.85891 5.94966 5.99623 6.22935 6.53996 6.71395 6.77273 6.89289 7.09848 7.44902 8.15832 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002098 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.592552 B =13339.892313 C =14404.933446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C -0.083 4.083 4 C -0.172 4.172 5 C 0.075 3.925 6 N -0.513 5.513 7 C 0.110 3.890 8 C -0.066 4.066 9 C -0.106 4.106 10 C 0.125 3.875 11 N -0.726 5.726 12 C 0.570 3.430 13 O -0.606 6.606 14 C -0.294 4.294 15 C -0.054 4.054 16 C -0.199 4.199 17 C 0.100 3.900 18 C -0.473 4.473 19 H 0.086 0.914 20 C 0.037 3.963 21 N -0.798 5.798 22 Si 0.988 3.012 23 H -0.257 1.257 24 H -0.264 1.264 25 H -0.259 1.259 26 C -0.253 4.253 27 C -0.034 4.034 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.407 0.593 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 18.486 11.762 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.109 4.109 4 C -0.191 4.191 5 C -0.082 4.082 6 N -0.222 5.222 7 C -0.027 4.027 8 C -0.105 4.105 9 C -0.144 4.144 10 C 0.002 3.998 11 N -0.378 5.378 12 C 0.364 3.636 13 O -0.491 6.491 14 C -0.298 4.298 15 C -0.073 4.073 16 C -0.218 4.218 17 C 0.097 3.903 18 C -0.500 4.500 19 H 0.104 0.896 20 C -0.182 4.182 21 N -0.422 5.422 22 Si 0.808 3.192 23 H -0.182 1.182 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.272 4.272 27 C -0.053 4.053 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.244 0.756 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.887 17.330 12.340 21.828 hybrid contribution -0.119 0.608 -1.010 1.185 sum 4.769 17.938 11.329 21.746 Atomic orbital electron populations 1.20900 0.88775 1.04201 1.03383 1.21019 0.98759 0.93430 1.00887 1.21887 0.94504 0.98805 0.95709 1.22460 0.95654 1.00089 1.00945 1.23146 1.01258 0.87909 0.95883 1.67467 1.08629 1.33065 1.13023 1.21220 0.89656 0.95432 0.96416 1.20464 1.00358 0.92782 0.96850 1.21542 1.00353 0.95382 0.97149 1.21316 0.99996 0.95972 0.82545 1.45781 1.58781 1.23809 1.09450 1.18402 0.76280 0.80238 0.88691 1.90611 1.55154 1.56388 1.46945 1.19193 1.17078 1.02052 0.91521 1.20723 0.96656 0.97693 0.92196 1.21018 1.06932 0.98030 0.95816 1.18150 0.88307 0.90390 0.93455 1.20089 1.11910 1.25924 0.92083 0.89606 1.26947 0.93312 0.91512 1.06422 1.69766 1.06811 1.27548 1.38052 0.85149 0.79349 0.80128 0.74598 1.18159 1.18815 1.18288 1.20853 1.12157 1.01754 0.92437 1.20528 0.94438 0.94403 0.95934 0.90332 0.89841 0.90360 0.82368 0.82104 0.81262 0.90514 0.87875 0.90091 0.91813 0.92776 0.91524 0.75646 0.85938 0.86805 0.89178 0.87754 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.63 71.24 0.69 -0.62 16 2 C -0.14 -2.20 5.90 -19.77 -0.12 -2.32 16 3 C -0.08 -1.08 9.86 22.47 0.22 -0.86 16 4 C -0.17 -2.21 10.11 22.36 0.23 -1.99 16 5 C 0.07 1.29 11.18 84.69 0.95 2.23 16 6 N -0.51 -11.62 10.27 -183.87 -1.89 -13.51 16 7 C 0.11 2.21 6.03 42.54 0.26 2.46 16 8 C -0.07 -1.22 5.10 29.85 0.15 -1.07 16 9 C -0.11 -2.15 5.31 30.59 0.16 -1.98 16 10 C 0.13 3.31 5.67 86.38 0.49 3.80 16 11 N -0.73 -23.60 5.50 -466.16 -2.57 -26.16 16 12 C 0.57 24.35 7.76 86.72 0.67 25.02 16 13 O -0.61 -29.29 16.32 -4.00 -0.07 -29.35 16 14 C -0.29 -13.59 5.89 -19.93 -0.12 -13.71 16 15 C -0.05 -2.38 9.47 22.25 0.21 -2.16 16 16 C -0.20 -9.88 8.64 22.47 0.19 -9.68 16 17 C 0.10 5.24 5.58 -21.28 -0.12 5.13 16 18 C -0.47 -23.95 9.04 23.46 0.21 -23.74 16 19 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 20 C 0.04 1.73 5.14 85.35 0.44 2.17 16 21 N -0.80 -38.32 10.95 21.87 0.24 -38.08 16 22 Si 0.99 34.77 29.60 68.60 2.03 36.80 16 23 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 24 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 25 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 26 C -0.25 -12.66 9.73 22.47 0.22 -12.44 16 27 C -0.03 -1.65 9.52 22.25 0.21 -1.43 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.08 0.84 5.95 -2.39 -0.01 0.83 16 31 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.50 5.94 -2.39 -0.01 1.49 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 11.57 6.47 -92.71 -0.60 10.97 16 41 H 0.12 4.42 6.37 -2.91 -0.02 4.40 16 42 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 43 H 0.30 12.69 8.29 -92.70 -0.77 11.92 16 44 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 45 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -66.45 377.44 3.11 -63.34 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: 0.41 Total: 38.16 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.95 Total: -31.20 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -4.22 Total: -77.75 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.07 Total: -29.35 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -66.45 3.11 -63.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296531448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.963 kcal (2) G-P(sol) polarization free energy of solvation -66.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds