Wall clock time and date at job start Tue Mar 31 2020 14:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38278 * 119.92675 * 2 1 4 4 C 1.38111 * 120.07490 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.92413 * 359.97438 * 4 3 2 6 6 N 1.39831 * 120.07263 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00025 * 188.05975 * 6 5 4 8 8 C 1.50704 * 109.47223 * 262.72789 * 7 6 5 9 9 H 1.07999 * 119.99463 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99968 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00195 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00080 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46825 * 59.99863 * 12 10 8 14 14 H 1.48502 * 109.47192 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46817 * 300.00403 * 12 10 8 16 16 C 1.34772 * 120.00145 * 8.05888 * 6 5 4 17 17 O 1.21534 * 119.99864 * 5.30809 * 16 6 5 18 18 C 1.48124 * 120.00351 * 185.30487 * 16 6 5 19 19 C 1.39328 * 119.72925 * 173.26948 * 18 16 6 20 20 C 1.38574 * 119.06014 * 179.97438 * 19 18 16 21 21 C 1.38637 * 118.49052 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.31835 * 179.97438 * 21 20 19 23 23 C 1.38552 * 119.35330 * 359.96855 * 21 20 19 24 24 C 1.50704 * 119.54145 * 180.02562 * 23 21 20 25 25 N 1.31521 * 120.90816 * 0.02850 * 23 21 20 26 26 C 1.38902 * 119.85299 * 0.27026 * 5 4 3 27 27 C 1.38102 * 119.92690 * 359.45359 * 26 5 4 28 28 H 1.08994 * 109.47390 * 90.00004 * 1 2 3 29 29 H 1.09003 * 109.47179 * 210.00066 * 1 2 3 30 30 H 1.09003 * 109.47267 * 329.99755 * 1 2 3 31 31 H 1.07997 * 119.96378 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.03747 * 180.02562 * 4 3 2 33 33 H 1.09006 * 109.46983 * 22.72438 * 7 6 5 34 34 H 1.09000 * 109.47027 * 142.72367 * 7 6 5 35 35 H 0.97001 * 119.99893 * 180.02562 * 11 10 8 36 36 H 1.08003 * 120.46593 * 359.97438 * 19 18 16 37 37 H 1.08009 * 120.75439 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.47540 * 89.99623 * 22 21 20 39 39 H 1.09001 * 109.47015 * 209.99460 * 22 21 20 40 40 H 1.09003 * 109.47405 * 329.99340 * 22 21 20 41 41 H 1.09003 * 109.46967 * 269.97792 * 24 23 21 42 42 H 1.08988 * 109.47320 * 29.98182 * 24 23 21 43 43 H 1.09005 * 109.46873 * 149.98678 * 24 23 21 44 44 H 1.08003 * 120.03426 * 179.70033 * 26 5 4 45 45 H 1.08003 * 119.96283 * 180.25454 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6723 0.0000 -0.0016 7 6 6.4047 -1.2563 -0.1795 8 6 6.8126 -1.7951 1.1675 9 1 6.5527 -1.2553 2.0661 10 6 7.5176 -2.9768 1.2526 11 7 7.8345 -3.6338 0.1582 12 14 8.0239 -3.6443 2.9222 13 1 6.8125 -3.8891 3.7455 14 1 8.7651 -4.9184 2.7419 15 1 8.8961 -2.6561 3.6065 16 6 6.3463 1.1557 0.1610 17 8 5.7427 2.1820 0.4046 18 6 7.8227 1.1750 0.0428 19 6 8.5023 2.3910 0.0715 20 6 9.8835 2.3929 -0.0396 21 6 10.5377 1.1782 -0.1763 22 6 12.0388 1.1324 -0.3009 23 6 9.7978 0.0069 -0.1969 24 6 10.5046 -1.3159 -0.3447 25 7 8.4873 0.0337 -0.0894 26 6 3.5779 -1.2020 -0.0057 27 6 2.1969 -1.1985 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6551 2.1327 0.0004 32 1 4.1162 2.1383 -0.0001 33 1 5.7650 -1.9817 -0.6823 34 1 7.2940 -1.0760 -0.7833 35 1 8.3302 -4.4654 0.2181 36 1 7.9601 3.3189 0.1789 37 1 10.4379 3.3196 -0.0202 38 1 12.4835 1.0510 0.6909 39 1 12.3274 0.2690 -0.9004 40 1 12.3913 2.0439 -0.7835 41 1 10.5922 -1.5649 -1.4023 42 1 11.4990 -1.2477 0.0962 43 1 9.9335 -2.0919 0.1651 44 1 4.1161 -2.1384 -0.0106 45 1 1.6551 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298899888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:15 Heat of formation + Delta-G solvation = 52.256380 kcal Electronic energy + Delta-G solvation = -27667.033908 eV Core-core repulsion = 24036.495673 eV Total energy + Delta-G solvation = -3630.538235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61879 -39.47278 -37.84809 -35.42969 -33.65821 -32.73723 -32.45232 -31.22783 -30.33103 -28.11372 -27.37853 -27.25860 -25.63255 -23.45114 -22.74316 -22.11019 -21.52084 -20.61606 -19.34028 -17.13113 -16.69746 -16.31475 -15.84049 -15.37157 -14.94271 -14.73208 -14.51068 -14.34969 -14.07124 -13.74086 -13.46932 -13.36806 -12.91360 -12.81440 -12.75768 -12.68199 -12.46333 -12.30828 -11.95809 -11.89352 -11.66676 -11.58852 -11.44147 -11.34217 -11.00980 -10.93561 -10.69555 -10.47349 -10.18809 -9.94569 -9.37472 -9.02452 -8.93774 -8.55905 -8.40416 -8.31812 -8.04586 -7.02374 -6.04965 -4.04773 1.01697 1.66161 1.93714 2.03208 3.25871 3.27807 3.31486 3.37776 3.63482 4.25684 4.38706 4.52955 4.63224 4.95014 5.04898 5.16855 5.18684 5.29723 5.33141 5.36801 5.56283 5.61632 5.62623 5.68004 5.73362 5.82443 5.96811 6.00466 6.05028 6.06641 6.13161 6.19641 6.26096 6.28639 6.39534 6.45607 6.59331 6.78028 6.86829 7.01824 7.02617 7.07330 7.18623 7.39270 7.63994 7.85680 7.87657 8.16737 8.21518 8.41388 8.78110 8.95191 9.54248 11.02090 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.005045 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.183639 B = 5548.550127 C = 7447.243397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.107 4.107 4 C -0.170 4.170 5 C 0.162 3.838 6 N -0.515 5.515 7 C 0.214 3.786 8 C -0.499 4.499 9 H 0.050 0.950 10 C 0.073 3.927 11 N -0.887 5.887 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.279 1.279 16 C 0.570 3.430 17 O -0.543 6.543 18 C 0.077 3.923 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.110 4.110 23 C 0.125 3.875 24 C -0.109 4.109 25 N -0.379 5.379 26 C -0.139 4.139 27 C -0.103 4.103 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.171 0.829 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.261 0.739 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 7.485 -3.177 8.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.126 4.126 4 C -0.190 4.190 5 C 0.066 3.934 6 N -0.232 5.232 7 C 0.096 3.904 8 C -0.538 4.538 9 H 0.068 0.932 10 C -0.128 4.128 11 N -0.527 5.527 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.205 1.205 16 C 0.360 3.640 17 O -0.424 6.424 18 C -0.061 4.061 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.167 4.167 23 C -0.014 4.014 24 C -0.166 4.166 25 N -0.090 5.090 26 C -0.160 4.160 27 C -0.122 4.122 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.188 0.812 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.157 0.843 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.780 7.023 -3.138 7.731 hybrid contribution 0.781 0.165 1.175 1.421 sum 1.561 7.188 -1.963 7.613 Atomic orbital electron populations 1.20659 0.92071 1.01905 1.01407 1.19774 0.95426 0.93501 1.04521 1.20860 0.93888 0.96813 1.01000 1.22440 0.94285 0.99796 1.02437 1.18117 0.82950 0.94261 0.98041 1.46031 1.03881 1.10649 1.62604 1.20538 0.93073 0.77598 0.99197 1.21111 1.34613 1.06303 0.91776 0.93176 1.24676 0.95750 0.96467 0.95943 1.69922 1.39788 1.16365 1.26583 0.86834 0.78911 0.78232 0.85118 1.20377 1.21129 1.20461 1.18042 0.86161 0.82863 0.76950 1.90402 1.67643 1.34102 1.50280 1.20985 0.94023 0.89753 1.01331 1.21949 0.94498 0.98901 0.99070 1.21289 0.93825 0.97689 0.99256 1.20982 0.97335 0.93964 1.00641 1.20772 0.90718 1.02851 1.02370 1.21481 0.89740 0.95094 0.95108 1.20815 0.98864 0.94047 1.02887 1.68547 1.07871 1.25988 1.06583 1.21123 0.94011 0.97745 1.03081 1.20734 0.93442 0.97074 1.00938 0.92067 0.92211 0.92293 0.86795 0.81231 0.94892 0.88450 0.92899 0.84247 0.84942 0.91014 0.90825 0.91672 0.90908 0.91877 0.87808 0.84307 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.13 -2.12 5.88 -104.59 -0.62 -2.73 16 3 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 4 C -0.17 -3.40 8.97 -39.39 -0.35 -3.75 16 5 C 0.16 3.52 6.48 -83.72 -0.54 2.97 16 6 N -0.51 -11.81 2.70 -115.69 -0.31 -12.12 16 7 C 0.21 5.22 4.25 -5.19 -0.02 5.20 16 8 C -0.50 -13.05 8.16 -34.44 -0.28 -13.33 16 9 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 10 C 0.07 1.89 5.06 -17.82 -0.09 1.80 16 11 N -0.89 -23.06 12.72 55.43 0.71 -22.35 16 12 Si 0.88 20.62 29.54 -169.99 -5.02 15.60 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.57 12.66 7.49 -12.20 -0.09 12.57 16 17 O -0.54 -12.05 12.85 5.34 0.07 -11.98 16 18 C 0.08 1.59 6.64 -83.01 -0.55 1.03 16 19 C -0.12 -2.07 9.63 -39.05 -0.38 -2.45 16 20 C -0.09 -1.34 9.85 -39.31 -0.39 -1.73 16 21 C -0.13 -1.87 5.91 -104.36 -0.62 -2.48 16 22 C -0.11 -1.17 9.20 36.00 0.33 -0.83 16 23 C 0.13 2.27 6.78 -82.61 -0.56 1.71 16 24 C -0.11 -1.83 9.36 36.01 0.34 -1.49 16 25 N -0.38 -8.02 5.00 -6.07 -0.03 -8.05 16 26 C -0.14 -2.83 9.16 -39.39 -0.36 -3.19 16 27 C -0.10 -1.79 9.69 -39.61 -0.38 -2.17 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.17 3.52 4.72 -55.21 -0.26 3.26 16 33 H 0.03 0.84 6.15 -51.93 -0.32 0.52 16 34 H 0.10 2.45 5.08 -54.98 -0.28 2.17 16 35 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.14 2.14 7.66 -52.48 -0.40 1.74 16 37 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.73 6.71 -51.93 -0.35 0.38 16 40 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.86 6.68 -51.94 -0.35 0.51 16 43 H 0.10 2.13 7.15 -51.93 -0.37 1.76 16 44 H 0.14 2.99 6.22 -52.48 -0.33 2.66 16 45 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -28.72 365.70 -9.66 -38.38 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.00 Total: 7.00 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -4.59 Total: -11.99 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.36 Total: -42.52 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.72 -9.66 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298899888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.640 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds