Wall clock time and date at job start Tue Mar 31 2020 14:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38074 * 120.00017 * 2 1 4 4 C 1.38886 * 119.99422 * 180.27343 * 3 2 1 5 5 N 1.39878 * 119.99754 * 179.69720 * 4 3 2 6 6 C 1.46494 * 119.99589 * 185.04671 * 5 4 3 7 7 C 1.46497 * 119.99864 * 5.05019 * 5 4 3 8 8 C 1.38925 * 119.99873 * 359.71717 * 4 3 2 9 9 C 1.38025 * 120.00138 * 0.02562 * 8 4 3 10 10 C 1.38871 * 119.99743 * 179.73542 * 2 1 3 11 11 N 1.40015 * 119.99887 * 0.02898 * 10 2 1 12 12 C 1.34780 * 120.00003 * 154.88198 * 11 10 2 13 13 O 1.21620 * 119.99504 * 354.24522 * 12 11 10 14 14 C 1.47582 * 119.99966 * 174.52929 * 12 11 10 15 15 C 1.40042 * 119.89865 * 359.72241 * 14 12 11 16 16 C 1.36297 * 120.10475 * 179.71602 * 15 14 12 17 17 C 1.40906 * 119.89377 * 0.58090 * 16 15 14 18 18 C 1.41080 * 120.10297 * 179.67217 * 17 16 15 19 19 H 1.07993 * 120.00486 * 214.77373 * 18 17 16 20 20 C 1.40232 * 119.99935 * 34.77205 * 18 17 16 21 21 N 1.30642 * 119.99969 * 5.18067 * 20 18 17 22 22 Si 1.86796 * 119.99998 * 185.18166 * 20 18 17 23 23 H 1.48499 * 109.47072 * 59.99838 * 22 20 18 24 24 H 1.48501 * 109.47119 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46867 * 299.99985 * 22 20 18 26 26 C 1.40903 * 119.79259 * 359.69484 * 17 16 15 27 27 C 1.36293 * 119.89883 * 359.97438 * 26 17 16 28 28 H 1.08991 * 109.47604 * 270.26320 * 1 2 3 29 29 H 1.09009 * 109.46676 * 30.26055 * 1 2 3 30 30 H 1.08998 * 109.47272 * 150.25410 * 1 2 3 31 31 H 1.07995 * 120.00318 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47712 * 354.98251 * 6 5 4 33 33 H 1.09000 * 109.47036 * 114.99046 * 6 5 4 34 34 H 1.09008 * 109.47089 * 234.98142 * 6 5 4 35 35 H 1.08999 * 109.47206 * 89.99885 * 7 5 4 36 36 H 1.09003 * 109.46950 * 209.99999 * 7 5 4 37 37 H 1.09004 * 109.47370 * 329.99503 * 7 5 4 38 38 H 1.07999 * 119.99977 * 179.97438 * 8 4 3 39 39 H 1.07995 * 119.99811 * 179.97438 * 9 8 4 40 40 H 0.96994 * 119.99603 * 334.87909 * 11 10 2 41 41 H 1.07995 * 119.94521 * 359.97438 * 15 14 12 42 42 H 1.07995 * 120.05511 * 180.27291 * 16 15 14 43 43 H 0.96999 * 120.00319 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.05029 * 179.97438 * 26 17 16 45 45 H 1.07996 * 119.94950 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5862 1.1956 -0.0057 5 7 4.2857 2.4070 -0.0121 6 6 5.7459 2.4089 -0.1298 7 6 3.5579 3.6735 0.0989 8 6 4.2807 -0.0076 -0.0055 9 6 3.5905 -1.2029 -0.0002 10 6 2.2013 -1.2027 0.0056 11 7 1.5012 -2.4152 0.0105 12 6 2.0796 -3.5294 -0.4798 13 8 3.1666 -3.4623 -1.0212 14 6 1.3912 -4.8298 -0.3653 15 6 0.1395 -4.9045 0.2584 16 6 -0.5026 -6.1023 0.3612 17 6 0.1003 -7.2686 -0.1503 18 6 -0.5573 -8.5118 -0.0400 19 1 0.0156 -9.4139 0.1155 20 6 -1.9551 -8.5762 -0.1322 21 7 -2.6409 -7.5023 -0.4207 22 14 -2.8366 -10.1975 0.1575 23 1 -2.5450 -10.6809 1.5310 24 1 -4.3001 -9.9999 0.0020 25 1 -2.3652 -11.2006 -0.8308 26 6 1.3624 -7.1893 -0.7718 27 6 1.9940 -5.9861 -0.8761 28 1 -0.3634 0.0047 1.0275 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6575 2.1310 -0.0004 32 1 6.1133 1.3829 -0.1115 33 1 6.0341 2.8815 -1.0688 34 1 6.1768 2.9641 0.7035 35 1 3.4600 3.9454 1.1499 36 1 4.1053 4.4545 -0.4290 37 1 2.5671 3.5632 -0.3418 38 1 5.3607 -0.0077 -0.0104 39 1 4.1304 -2.1381 -0.0004 40 1 0.5999 -2.4532 0.3669 41 1 -0.3194 -4.0109 0.6547 42 1 -1.4698 -6.1582 0.8385 43 1 -3.6077 -7.5469 -0.4849 44 1 1.8285 -8.0807 -1.1650 45 1 2.9611 -5.9243 -1.3527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340099991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:03 Heat of formation + Delta-G solvation = 7.693263 kcal Electronic energy + Delta-G solvation = -25946.641205 eV Core-core repulsion = 22314.170569 eV Total energy + Delta-G solvation = -3632.470637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61999 -40.18145 -38.97794 -37.46934 -35.62440 -35.03024 -33.46540 -32.14369 -31.35521 -30.26342 -29.36094 -27.80255 -27.18772 -25.54868 -23.87009 -23.06390 -22.81333 -21.37711 -20.89324 -19.37301 -18.99789 -18.11113 -17.54571 -17.12582 -16.67765 -16.03548 -15.85414 -15.77391 -15.73240 -15.24546 -15.06155 -14.70183 -14.50171 -14.44811 -14.26389 -13.96433 -13.69700 -13.56167 -13.31003 -13.28357 -13.01684 -12.87489 -12.83879 -12.79528 -12.64365 -12.59115 -12.34301 -11.96091 -11.74058 -11.46451 -11.40058 -11.17145 -10.61679 -9.91596 -9.62777 -9.60136 -9.33879 -8.70314 -7.86850 -6.50864 0.23576 0.48855 0.72535 1.11372 1.40976 1.45321 1.52552 2.10244 2.19919 2.24976 2.36251 2.77043 2.98805 3.63539 3.82106 3.97893 4.12201 4.18076 4.25969 4.37168 4.41607 4.44777 4.48544 4.56861 4.65671 4.75859 4.81173 4.83768 4.90429 4.91627 4.94805 5.04915 5.08387 5.11079 5.16210 5.25674 5.29914 5.35390 5.56566 5.61571 5.66345 5.78005 5.90764 5.99053 6.02658 6.22718 6.42386 6.53866 6.59687 6.64208 6.78741 6.86465 7.34432 8.25402 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.002299 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.233940 B =12176.952512 C =12948.081860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.179 4.179 4 C 0.193 3.807 5 N -0.646 5.646 6 C 0.086 3.914 7 C 0.091 3.909 8 C -0.194 4.194 9 C -0.101 4.101 10 C 0.073 3.927 11 N -0.659 5.659 12 C 0.568 3.432 13 O -0.582 6.582 14 C -0.280 4.280 15 C -0.058 4.058 16 C -0.181 4.181 17 C 0.105 3.895 18 C -0.481 4.481 19 H 0.084 0.916 20 C 0.034 3.966 21 N -0.815 5.815 22 Si 0.990 3.010 23 H -0.257 1.257 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.241 4.241 27 C -0.035 4.035 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.415 0.585 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.294 0.706 44 H 0.107 0.893 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 19.032 3.153 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.202 4.202 4 C 0.091 3.909 5 N -0.359 5.359 6 C -0.057 4.057 7 C -0.052 4.052 8 C -0.216 4.216 9 C -0.122 4.122 10 C -0.022 4.022 11 N -0.304 5.304 12 C 0.363 3.637 13 O -0.465 6.465 14 C -0.284 4.284 15 C -0.077 4.077 16 C -0.200 4.200 17 C 0.102 3.898 18 C -0.510 4.510 19 H 0.103 0.897 20 C -0.183 4.183 21 N -0.440 5.440 22 Si 0.810 3.190 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.186 1.186 26 C -0.260 4.260 27 C -0.055 4.055 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.253 0.747 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.126 0.874 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.872 19.314 2.750 20.108 hybrid contribution -0.566 -1.049 0.025 1.192 sum 4.306 18.264 2.775 18.969 Atomic orbital electron populations 1.20811 0.89232 1.03592 1.03543 1.19662 0.97068 0.90560 1.00260 1.20556 0.91803 0.97869 1.09974 1.17907 0.91561 0.86153 0.95246 1.46489 1.06098 1.03027 1.80293 1.21791 0.79014 1.03144 1.01728 1.21744 0.97606 0.84259 1.01558 1.20705 1.00123 0.90461 1.10333 1.21130 0.93117 0.98783 0.99143 1.17733 0.91533 0.85293 1.07688 1.43261 1.19058 1.06543 1.61515 1.18518 0.84577 0.84368 0.76237 1.90591 1.23115 1.86991 1.45768 1.19152 0.99475 0.92186 1.17581 1.20760 0.92907 0.97585 0.96429 1.21025 1.01204 0.92740 1.05078 1.18183 0.91008 0.94353 0.86303 1.20002 0.92651 0.94623 1.43691 0.89741 1.26874 0.97979 1.02181 0.91279 1.69715 1.09771 1.31673 1.32867 0.85118 0.77074 0.76723 0.80064 1.18163 1.19033 1.18574 1.20985 0.99480 0.96885 1.08692 1.20539 0.97592 0.92040 0.95284 0.89408 0.89241 0.92350 0.83219 0.91013 0.92104 0.91337 0.92951 0.90039 0.90989 0.84758 0.86352 0.74660 0.85817 0.86843 0.89530 0.87444 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.44 71.24 0.67 -1.65 16 2 C -0.07 -1.92 5.89 -19.75 -0.12 -2.04 16 3 C -0.18 -4.17 8.90 22.39 0.20 -3.98 16 4 C 0.19 4.76 6.54 38.18 0.25 5.01 16 5 N -0.65 -11.93 3.41 -747.09 -2.55 -14.48 16 6 C 0.09 1.23 10.62 127.77 1.36 2.59 16 7 C 0.09 1.10 10.34 127.77 1.32 2.42 16 8 C -0.19 -5.54 9.31 22.38 0.21 -5.33 16 9 C -0.10 -3.53 8.71 22.38 0.19 -3.34 16 10 C 0.07 2.44 6.41 38.15 0.24 2.69 16 11 N -0.66 -23.26 4.91 -306.15 -1.50 -24.76 16 12 C 0.57 24.48 7.56 86.71 0.66 25.13 16 13 O -0.58 -27.79 13.49 -4.09 -0.06 -27.84 16 14 C -0.28 -12.74 5.89 -19.94 -0.12 -12.85 16 15 C -0.06 -2.52 9.47 22.25 0.21 -2.31 16 16 C -0.18 -8.90 8.56 22.47 0.19 -8.70 16 17 C 0.10 5.41 5.50 -21.28 -0.12 5.30 16 18 C -0.48 -24.35 9.03 23.45 0.21 -24.14 16 19 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 20 C 0.03 1.57 5.31 85.35 0.45 2.02 16 21 N -0.82 -39.51 10.96 21.87 0.24 -39.27 16 22 Si 0.99 35.46 29.56 68.60 2.03 37.49 16 23 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 24 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 25 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 26 C -0.24 -11.87 9.73 22.47 0.22 -11.65 16 27 C -0.04 -1.68 9.52 22.25 0.21 -1.47 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.42 8.09 -2.38 -0.02 1.40 16 30 H 0.06 1.29 6.98 -2.39 -0.02 1.28 16 31 H 0.15 2.57 6.03 -2.91 -0.02 2.55 16 32 H 0.07 1.13 5.31 -2.39 -0.01 1.12 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 36 H 0.08 0.69 8.07 -2.39 -0.02 0.67 16 37 H 0.07 0.81 6.01 -2.38 -0.01 0.80 16 38 H 0.13 3.33 5.73 -2.91 -0.02 3.32 16 39 H 0.12 4.77 5.79 -2.91 -0.02 4.75 16 40 H 0.41 12.56 5.43 -92.71 -0.50 12.06 16 41 H 0.12 4.39 6.39 -2.91 -0.02 4.37 16 42 H 0.11 5.67 6.48 -2.91 -0.02 5.65 16 43 H 0.29 12.80 8.29 -92.71 -0.77 12.03 16 44 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 45 H 0.11 4.90 7.63 -2.91 -0.02 4.88 16 Total: -1.00 -63.82 365.13 4.94 -58.88 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: 0.53 Total: 42.28 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 6.25 Total: -32.29 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.81 Total: -78.51 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.06 Total: -27.84 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -63.82 4.94 -58.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340099991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.570 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds