Wall clock time and date at job start Tue Mar 31 2020 13:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30824 * 119.23317 * 2 1 4 4 C 1.33793 * 121.71728 * 180.02562 * 3 2 1 5 5 C 1.40530 * 120.81967 * 180.02562 * 4 3 2 6 6 C 1.36133 * 119.81624 * 179.69668 * 5 4 3 7 7 C 1.39343 * 121.09012 * 0.28836 * 6 5 4 8 8 C 1.36144 * 120.83719 * 0.02562 * 7 6 5 9 9 C 1.40548 * 119.62109 * 359.97438 * 8 7 6 10 10 C 1.40488 * 121.22861 * 179.97438 * 9 8 7 11 11 C 1.39060 * 117.95929 * 179.10295 * 10 9 8 12 12 C 1.47759 * 120.26537 * 180.29305 * 11 10 9 13 13 O 1.21566 * 119.99589 * 235.10038 * 12 11 10 14 14 N 1.34776 * 120.00264 * 55.10424 * 12 11 10 15 15 C 1.46498 * 120.00024 * 5.71031 * 14 12 11 16 16 C 1.50693 * 109.47068 * 90.00297 * 15 14 12 17 17 H 1.07995 * 120.00452 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99975 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99964 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00329 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46650 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47195 * 119.99359 * 20 18 16 23 23 H 1.48500 * 109.47078 * 239.99815 * 20 18 16 24 24 C 1.46505 * 119.99788 * 185.71142 * 14 12 11 25 25 C 1.52996 * 109.47028 * 85.32068 * 24 14 12 26 26 C 1.53007 * 117.49796 * 243.55001 * 25 24 14 27 27 C 1.53003 * 117.50028 * 174.89261 * 25 24 14 28 28 H 1.09000 * 109.47254 * 86.11473 * 1 2 3 29 29 H 1.09002 * 109.47626 * 206.11793 * 1 2 3 30 30 H 1.09001 * 109.46961 * 326.11868 * 1 2 3 31 31 H 1.08007 * 120.09110 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.45669 * 180.29903 * 6 5 4 33 33 H 1.08001 * 119.58289 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.18669 * 179.97438 * 8 7 6 35 35 H 1.08007 * 121.01627 * 0.02562 * 10 9 8 36 36 H 1.09004 * 109.46721 * 210.00192 * 15 14 12 37 37 H 1.08999 * 109.46807 * 329.99642 * 15 14 12 38 38 H 0.96999 * 119.99792 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.46799 * 205.31839 * 24 14 12 40 40 H 1.09002 * 109.46816 * 325.31840 * 24 14 12 41 41 H 1.08997 * 115.55272 * 29.21671 * 25 24 14 42 42 H 1.09002 * 117.49579 * 359.97438 * 26 25 24 43 43 H 1.08999 * 117.50043 * 145.02537 * 26 25 24 44 44 H 1.09004 * 117.49976 * 214.98170 * 27 25 24 45 45 H 1.09003 * 117.49674 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1996 -0.0005 5 6 4.1495 2.4365 0.0000 6 6 5.5104 2.4717 0.0058 7 6 6.2605 1.2974 0.0051 8 6 5.6511 0.0800 -0.0018 9 6 4.2476 0.0058 -0.0078 10 6 3.5838 -1.2324 -0.0156 11 6 2.1933 -1.2267 -0.0020 12 6 1.4433 -2.4998 -0.0028 13 8 0.6074 -2.7123 -0.8595 14 7 1.6859 -3.4254 0.9464 15 6 2.6003 -3.1210 2.0497 16 6 1.8251 -2.5180 3.1927 17 1 0.7582 -2.3753 3.1058 18 6 2.4782 -2.1474 4.3490 19 7 3.7777 -2.3207 4.4547 20 14 1.5176 -1.3992 5.7656 21 1 0.0815 -1.3111 5.3978 22 1 1.6687 -2.2524 6.9715 23 1 2.0388 -0.0387 6.0532 24 6 1.0351 -4.7360 0.8746 25 6 1.8555 -5.6644 -0.0231 26 6 1.1968 -6.1672 -1.3093 27 6 1.4047 -7.1225 -0.1314 28 1 -0.3634 0.0696 -1.0253 29 1 -0.3634 -0.9227 0.4524 30 1 -0.3633 0.8532 0.5729 31 1 3.5840 3.3567 0.0005 32 1 6.0170 3.4255 0.0111 33 1 7.3391 1.3537 0.0093 34 1 6.2429 -0.8235 -0.0026 35 1 4.1366 -2.1602 -0.0167 36 1 3.0850 -4.0385 2.3835 37 1 3.3565 -2.4134 1.7101 38 1 4.2371 -2.0603 5.2683 39 1 0.9682 -5.1637 1.8750 40 1 0.0333 -4.6220 0.4605 41 1 2.9268 -5.4655 -0.0509 42 1 0.1787 -5.8369 -1.5156 43 1 1.8348 -6.2995 -2.1831 44 1 2.1794 -7.8828 -0.2307 45 1 0.5238 -7.4204 0.4373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455444250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:54 Heat of formation + Delta-G solvation = 42.623571 kcal Electronic energy + Delta-G solvation = -27651.641097 eV Core-core repulsion = 24020.685153 eV Total energy + Delta-G solvation = -3630.955945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71337 -39.14844 -37.23127 -36.53364 -34.87734 -33.17692 -32.52045 -31.63065 -30.06172 -27.90686 -27.53365 -26.34380 -24.10730 -22.89441 -22.32443 -22.12184 -21.84242 -20.67488 -19.25676 -17.76619 -17.06758 -16.45213 -16.31788 -15.89136 -15.44818 -14.80661 -14.65999 -14.46724 -14.25106 -14.12333 -13.91530 -13.38651 -13.13260 -12.90203 -12.72511 -12.65721 -12.30502 -12.07869 -11.77735 -11.61485 -11.50907 -11.35025 -11.30176 -11.17738 -11.04957 -10.94466 -10.84254 -10.37661 -10.16209 -10.05088 -9.73031 -9.64349 -9.53875 -8.99924 -8.58675 -8.32390 -7.98510 -7.77546 -6.21606 -4.27382 0.60862 1.02905 2.21852 2.96899 3.20452 3.28987 3.31419 3.40534 3.74926 4.09895 4.31358 4.38995 4.48185 4.81325 4.93621 5.00754 5.05941 5.06923 5.13400 5.17837 5.25443 5.33196 5.38566 5.44876 5.65658 5.70599 5.80612 5.88683 6.00869 6.03373 6.06258 6.09037 6.12287 6.16820 6.18944 6.27784 6.32082 6.45291 6.51594 6.54070 6.60536 6.70403 6.80349 7.07363 7.08951 7.43832 7.72806 8.01290 8.17085 8.27073 8.71687 8.87085 9.39684 10.85361 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.005608 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.091300 B = 4991.656016 C = 6499.064164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.208 3.792 3 N -0.487 5.487 4 C 0.145 3.855 5 C -0.101 4.101 6 C -0.100 4.100 7 C -0.132 4.132 8 C -0.079 4.079 9 C -0.109 4.109 10 C -0.009 4.009 11 C -0.151 4.151 12 C 0.567 3.433 13 O -0.555 6.555 14 N -0.585 5.585 15 C 0.228 3.772 16 C -0.534 4.534 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.151 3.849 25 C -0.162 4.162 26 C -0.173 4.173 27 C -0.179 4.179 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 1.126 -8.887 9.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.056 3.944 3 N -0.196 5.196 4 C 0.023 3.977 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.150 4.150 8 C -0.098 4.098 9 C -0.111 4.111 10 C -0.035 4.035 11 C -0.156 4.156 12 C 0.354 3.646 13 O -0.436 6.436 14 N -0.314 5.314 15 C 0.109 3.891 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.028 3.972 25 C -0.181 4.181 26 C -0.210 4.210 27 C -0.217 4.217 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.769 1.871 -9.163 9.518 hybrid contribution 0.333 -0.412 1.185 1.299 sum 2.102 1.458 -7.978 8.378 Atomic orbital electron populations 1.20766 0.88321 1.03655 1.03162 1.21296 0.96976 0.86528 0.89622 1.67753 1.08296 1.28104 1.15455 1.18878 0.89145 0.92881 0.96805 1.20729 0.94122 0.96247 1.00862 1.20846 0.93695 0.98482 0.98944 1.20807 1.00020 0.92348 1.01814 1.21014 0.92639 0.98502 0.97611 1.18708 0.94795 0.93665 1.03932 1.21783 0.93021 0.97445 0.91237 1.20660 0.94337 0.95237 1.05364 1.17933 0.82180 0.82958 0.81514 1.90700 1.34390 1.79581 1.38916 1.48140 1.45866 1.12333 1.25081 1.19697 0.88760 0.97494 0.83179 1.21468 0.94971 1.41638 0.99212 0.92088 1.24903 0.94893 0.95366 0.98468 1.69916 1.07704 1.47176 1.27879 0.86506 0.80393 0.79036 0.82033 1.19540 1.20760 1.20805 1.20879 0.95188 0.81894 0.99267 1.22783 1.00221 0.95251 0.99847 1.22972 1.02173 1.03775 0.92122 1.22920 1.03273 0.92727 1.02787 0.89960 0.90231 0.90565 0.85037 0.85689 0.85803 0.85295 0.84012 0.94404 0.93797 0.92608 0.89636 0.90736 0.87987 0.88649 0.89518 0.89156 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.39 36.00 0.34 -1.44 16 2 C 0.21 4.13 6.82 -82.15 -0.56 3.57 16 3 N -0.49 -9.50 10.20 -6.94 -0.07 -9.57 16 4 C 0.14 2.65 6.61 -84.79 -0.56 2.09 16 5 C -0.10 -1.52 9.97 -39.47 -0.39 -1.91 16 6 C -0.10 -1.26 9.94 -39.93 -0.40 -1.66 16 7 C -0.13 -1.67 9.96 -39.92 -0.40 -2.07 16 8 C -0.08 -1.16 9.77 -39.46 -0.39 -1.55 16 9 C -0.11 -1.94 5.74 -106.82 -0.61 -2.56 16 10 C -0.01 -0.16 7.43 -38.43 -0.29 -0.45 16 11 C -0.15 -3.05 4.95 -104.82 -0.52 -3.57 16 12 C 0.57 11.75 5.99 -12.37 -0.07 11.67 16 13 O -0.56 -11.99 15.60 5.31 0.08 -11.91 16 14 N -0.59 -11.95 2.46 -176.21 -0.43 -12.38 16 15 C 0.23 5.29 4.96 -5.20 -0.03 5.26 16 16 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 20 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.15 2.68 5.69 -4.04 -0.02 2.66 16 25 C -0.16 -2.49 5.98 -90.62 -0.54 -3.03 16 26 C -0.17 -2.38 10.18 -26.69 -0.27 -2.65 16 27 C -0.18 -2.26 10.25 -26.69 -0.27 -2.53 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.48 6.58 -51.93 -0.34 1.14 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.14 2.41 7.49 -52.48 -0.39 2.02 16 36 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.04 1.05 4.46 -51.93 -0.23 0.82 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.09 1.51 8.04 -51.93 -0.42 1.10 16 40 H 0.07 1.33 7.22 -51.93 -0.38 0.95 16 41 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 42 H 0.10 1.35 8.03 -51.93 -0.42 0.94 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -29.96 377.97 -10.78 -40.74 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.37 Total: 5.83 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -5.40 Total: -10.69 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.23 Total: -45.59 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.96 -10.78 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455444250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.362 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds