Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.92562 * 2 1 4 4 C 1.38092 * 120.07545 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.92730 * 359.97438 * 4 3 2 6 6 N 1.39725 * 120.07916 * 180.02562 * 5 4 3 7 7 C 1.38933 * 120.00369 * 180.91477 * 6 5 4 8 8 C 1.38968 * 120.17866 * 261.15626 * 7 6 5 9 9 C 1.37951 * 120.06342 * 179.97438 * 8 7 6 10 10 C 1.38605 * 120.42495 * 0.02739 * 9 8 7 11 11 C 1.37762 * 120.35697 * 359.66799 * 10 9 8 12 12 C 1.39728 * 119.92254 * 0.60485 * 11 10 9 13 13 C 1.47436 * 120.20748 * 179.69342 * 12 11 10 14 14 O 1.21600 * 119.99711 * 185.56932 * 13 12 11 15 15 N 1.34770 * 119.99721 * 5.57530 * 13 12 11 16 16 C 1.46509 * 119.99727 * 179.72341 * 15 13 12 17 17 H 1.08993 * 109.46930 * 325.27135 * 16 15 13 18 18 C 1.53000 * 109.46917 * 85.26998 * 16 15 13 19 19 C 1.50693 * 109.47180 * 205.27062 * 16 15 13 20 20 H 1.08005 * 119.99755 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00137 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00010 * 180.02562 * 21 19 16 23 23 Si 1.86796 * 120.00131 * 359.97438 * 21 19 16 24 24 H 1.48501 * 109.46824 * 89.99802 * 23 21 19 25 25 H 1.48497 * 109.47177 * 210.00201 * 23 21 19 26 26 H 1.48503 * 109.47089 * 330.00140 * 23 21 19 27 27 C 1.38927 * 119.84582 * 0.27165 * 5 4 3 28 28 C 1.38099 * 119.92271 * 359.45437 * 27 5 4 29 29 H 1.08989 * 109.46848 * 90.00088 * 1 2 3 30 30 H 1.09000 * 109.46947 * 210.00168 * 1 2 3 31 31 H 1.08996 * 109.46564 * 330.00057 * 1 2 3 32 32 H 1.07998 * 119.96159 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.03953 * 180.02562 * 4 3 2 34 34 H 0.96999 * 120.00167 * 0.91628 * 6 5 4 35 35 H 1.07999 * 119.96402 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.78174 * 180.02562 * 9 8 7 37 37 H 1.08004 * 119.82718 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.03952 * 180.32358 * 11 10 9 39 39 H 0.96994 * 120.00797 * 359.97438 * 15 13 12 40 40 H 1.08998 * 109.47190 * 300.00045 * 18 16 15 41 41 H 1.09002 * 109.47008 * 60.00330 * 18 16 15 42 42 H 1.08999 * 109.46876 * 179.97438 * 18 16 15 43 43 H 0.97003 * 120.00130 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.03459 * 179.69943 * 27 5 4 45 45 H 1.08002 * 119.96022 * 180.26752 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2741 0.0000 0.0016 6 7 5.6713 -0.0001 0.0027 7 6 6.3661 -1.2031 -0.0154 8 6 6.8744 -1.7341 1.1639 9 6 7.5634 -2.9291 1.1432 10 6 7.7548 -3.6084 -0.0497 11 6 7.2529 -3.1011 -1.2281 12 6 6.5578 -1.8890 -1.2250 13 6 6.0239 -1.3369 -2.4835 14 8 5.5090 -0.2353 -2.4941 15 7 6.1064 -2.0532 -3.6221 16 6 5.5705 -1.5071 -4.8716 17 1 4.6802 -0.9159 -4.6572 18 6 6.6254 -0.6186 -5.5338 19 6 5.2110 -2.6378 -5.8006 20 1 5.3666 -3.6609 -5.4915 21 6 4.6834 -2.3663 -7.0451 22 7 4.3692 -3.3532 -7.8557 23 14 4.4136 -0.5968 -7.5795 24 1 5.6334 -0.0941 -8.2610 25 1 3.2618 -0.5323 -8.5146 26 1 4.1310 0.2426 -6.3875 27 6 3.5779 -1.2022 -0.0036 28 6 2.1969 -1.1986 0.0016 29 1 -0.3632 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3632 0.8900 0.5138 32 1 1.6551 2.1327 -0.0004 33 1 4.1161 2.1384 0.0010 34 1 6.1564 0.8398 0.0161 35 1 6.7299 -1.2107 2.0975 36 1 7.9561 -3.3378 2.0625 37 1 8.2960 -4.5430 -0.0548 38 1 7.4006 -3.6373 -2.1539 39 1 6.5174 -2.9317 -3.6138 40 1 6.8854 0.1992 -4.8618 41 1 7.5157 -1.2099 -5.7481 42 1 6.2268 -0.2127 -6.4635 43 1 3.9977 -3.1622 -8.7312 44 1 4.1161 -2.1386 -0.0077 45 1 1.6550 -2.1328 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579389708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = 29.252029 kcal Electronic energy + Delta-G solvation = -27265.311918 eV Core-core repulsion = 23633.776140 eV Total energy + Delta-G solvation = -3631.535778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.41649 -38.92834 -38.02756 -35.72481 -34.80893 -32.52093 -31.71372 -31.42637 -30.63198 -29.53642 -28.99227 -25.73493 -25.19023 -23.82066 -22.95113 -22.03219 -21.22518 -20.47706 -19.61681 -18.07620 -17.32732 -17.04739 -16.20253 -15.81628 -15.25850 -15.10295 -14.79879 -14.58524 -14.18194 -14.08727 -13.92001 -13.61240 -13.56285 -13.16607 -12.99638 -12.92806 -12.44851 -12.28689 -12.19989 -12.09586 -11.93073 -11.75254 -11.49697 -11.23887 -11.19804 -10.80800 -10.68825 -10.18435 -10.04771 -9.66868 -9.22721 -9.06599 -9.04752 -8.83616 -8.74424 -8.64704 -8.10809 -7.15343 -6.20339 -4.22594 0.86470 1.18052 1.71947 1.86462 3.19352 3.23862 3.36045 3.41415 3.52086 3.90444 4.03410 4.13726 4.32609 4.77657 4.84099 4.99193 5.05787 5.14829 5.16384 5.29362 5.32997 5.37335 5.42186 5.50717 5.67454 5.77165 5.78271 5.89875 5.95611 6.11689 6.18712 6.26602 6.30191 6.31630 6.32481 6.41134 6.56264 6.56655 6.65218 6.70178 6.86955 6.93978 7.13777 7.20693 7.30596 7.53263 7.66480 7.85061 8.16706 8.53355 8.76635 8.95414 9.40793 10.91869 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009329 B = 0.004884 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.741815 B = 5732.112852 C = 7678.358992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.181 4.181 5 C 0.239 3.761 6 N -0.688 5.688 7 C 0.198 3.802 8 C -0.132 4.132 9 C -0.096 4.096 10 C -0.126 4.126 11 C -0.082 4.082 12 C -0.129 4.129 13 C 0.542 3.458 14 O -0.532 6.532 15 N -0.697 5.697 16 C 0.239 3.761 17 H 0.049 0.951 18 C -0.160 4.160 19 C -0.534 4.534 20 H 0.079 0.921 21 C 0.079 3.921 22 N -0.893 5.893 23 Si 0.885 3.115 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.262 1.262 27 C -0.182 4.182 28 C -0.073 4.073 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.407 0.593 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.392 0.608 40 H 0.035 0.965 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.267 0.733 44 H 0.113 0.887 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 3.305 20.003 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.204 4.204 5 C 0.139 3.861 6 N -0.315 5.315 7 C 0.103 3.897 8 C -0.152 4.152 9 C -0.115 4.115 10 C -0.145 4.145 11 C -0.102 4.102 12 C -0.134 4.134 13 C 0.327 3.673 14 O -0.410 6.410 15 N -0.346 5.346 16 C 0.136 3.864 17 H 0.067 0.933 18 C -0.218 4.218 19 C -0.572 4.572 20 H 0.097 0.903 21 C -0.125 4.125 22 N -0.529 5.529 23 Si 0.714 3.286 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.187 1.187 27 C -0.204 4.204 28 C -0.092 4.092 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.245 0.755 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.226 0.774 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.547 3.898 19.758 20.299 hybrid contribution 0.434 0.611 -0.709 1.031 sum 2.981 4.508 19.049 19.801 Atomic orbital electron populations 1.20634 0.91810 1.01764 1.01773 1.19598 0.95637 0.93107 1.06764 1.20654 0.93267 0.97160 0.98428 1.20433 0.94237 0.95956 1.09739 1.17549 0.82227 0.93808 0.92555 1.41379 1.02618 1.05441 1.82018 1.17347 0.93586 0.87712 0.91031 1.21445 0.99733 0.96534 0.97442 1.21162 0.97618 0.94500 0.98226 1.21129 1.00602 1.00433 0.92291 1.21402 0.95651 0.94105 0.99024 1.20815 1.01421 0.96590 0.94614 1.18037 0.80190 0.85731 0.83335 1.90758 1.44268 1.19930 1.86028 1.46142 1.59490 1.20273 1.08685 1.19081 0.92428 0.94234 0.80682 0.93334 1.22438 1.00719 0.99162 0.99460 1.21028 1.43644 0.93150 0.99361 0.90262 1.24814 0.94299 0.97279 0.96061 1.69869 1.42709 1.31426 1.08943 0.86885 0.77180 0.85487 0.79001 1.20345 1.22130 1.18660 1.20564 0.94359 0.96281 1.09213 1.20704 0.93328 0.97282 0.97883 0.91863 0.92249 0.92327 0.86588 0.86579 0.75526 0.85370 0.85530 0.85339 0.85003 0.77372 0.94630 0.92899 0.93477 0.92303 0.86854 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.15 -2.13 5.88 -104.58 -0.62 -2.74 16 3 C -0.08 -1.08 9.69 -39.62 -0.38 -1.46 16 4 C -0.18 -2.69 9.90 -39.38 -0.39 -3.08 16 5 C 0.24 3.76 5.26 -83.75 -0.44 3.32 16 6 N -0.69 -9.83 3.91 -8.24 -0.03 -9.86 16 7 C 0.20 2.74 4.46 -83.57 -0.37 2.37 16 8 C -0.13 -1.43 9.96 -39.42 -0.39 -1.82 16 9 C -0.10 -0.90 10.03 -39.55 -0.40 -1.29 16 10 C -0.13 -1.26 10.02 -39.62 -0.40 -1.66 16 11 C -0.08 -1.04 9.52 -39.20 -0.37 -1.41 16 12 C -0.13 -2.00 5.56 -104.79 -0.58 -2.58 16 13 C 0.54 10.63 7.69 -12.52 -0.10 10.53 16 14 O -0.53 -11.90 13.68 5.28 0.07 -11.83 16 15 N -0.70 -14.26 5.02 -56.01 -0.28 -14.54 16 16 C 0.24 5.82 2.15 -69.08 -0.15 5.67 16 17 H 0.05 1.32 6.63 -51.93 -0.34 0.98 16 18 C -0.16 -3.64 8.97 37.16 0.33 -3.31 16 19 C -0.53 -14.60 9.31 -34.44 -0.32 -14.92 16 20 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 21 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 22 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 23 Si 0.88 22.16 24.38 -169.99 -4.14 18.01 16 24 H -0.28 -6.68 6.87 56.52 0.39 -6.30 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.26 -6.58 6.53 56.52 0.37 -6.22 16 27 C -0.18 -2.94 9.26 -39.38 -0.36 -3.31 16 28 C -0.07 -1.11 9.69 -39.61 -0.38 -1.49 16 29 H 0.06 0.72 8.14 -51.94 -0.42 0.30 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.41 5.24 8.83 -40.82 -0.36 4.88 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.13 1.52 6.44 -52.48 -0.34 1.19 16 39 H 0.39 7.08 6.60 -40.82 -0.27 6.81 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.11 3.28 -51.93 -0.17 0.94 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.11 1.84 6.78 -52.48 -0.36 1.48 16 45 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -32.81 368.02 -9.21 -42.02 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.08 Total: 12.34 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.06 Total: -15.84 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.46 Total: -50.26 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.81 -9.21 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579389708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.274 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds