Wall clock time and date at job start Tue Mar 31 2020 13:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48497 * 109.47043 * 269.99502 * 3 2 1 5 5 H 1.48504 * 109.47182 * 29.99301 * 3 2 1 6 6 H 1.48494 * 109.47333 * 149.99337 * 3 2 1 7 7 C 1.37875 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99621 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.27352 * 57.91432 * 9 7 2 11 11 C 1.54593 * 110.39309 * 295.76634 * 9 7 2 12 12 C 1.54943 * 102.91873 * 262.99816 * 11 9 7 13 13 N 1.48529 * 103.23110 * 322.58517 * 12 11 9 14 14 C 1.46896 * 111.00073 * 159.72217 * 13 12 11 15 15 C 1.50696 * 109.47263 * 52.60847 * 14 13 12 16 16 C 1.38342 * 119.94121 * 89.99878 * 15 14 13 17 17 C 1.38308 * 120.24976 * 179.97438 * 16 15 14 18 18 C 1.38032 * 120.12282 * 0.02562 * 17 16 15 19 19 C 1.39343 * 119.87503 * 359.97438 * 18 17 16 20 20 C 1.48341 * 120.12064 * 179.97438 * 19 18 17 21 21 C 1.39340 * 119.73222 * 5.00290 * 20 19 18 22 22 C 1.38400 * 119.07019 * 179.97438 * 21 20 19 23 23 C 1.38784 * 118.51107 * 0.02562 * 22 21 20 24 24 C 1.38252 * 119.36773 * 359.97438 * 23 22 21 25 25 N 1.31765 * 120.89073 * 359.72535 * 24 23 22 26 26 C 1.37999 * 119.93512 * 269.72318 * 15 14 13 27 27 C 1.47906 * 105.81645 * 39.20833 * 13 12 11 28 28 H 0.97006 * 120.00360 * 0.02562 * 1 2 3 29 29 H 0.96701 * 114.00257 * 302.08624 * 10 9 7 30 30 H 1.08999 * 110.72465 * 21.35870 * 11 9 7 31 31 H 1.09004 * 110.72424 * 144.46554 * 11 9 7 32 32 H 1.08995 * 110.66363 * 81.02624 * 12 11 9 33 33 H 1.09004 * 110.66427 * 204.15338 * 12 11 9 34 34 H 1.09002 * 109.47199 * 172.60745 * 14 13 12 35 35 H 1.09006 * 109.47203 * 292.60633 * 14 13 12 36 36 H 1.07995 * 119.87306 * 359.97438 * 16 15 14 37 37 H 1.07993 * 119.93666 * 180.02562 * 17 16 15 38 38 H 1.08000 * 120.06372 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.45936 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.74308 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.31650 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.55127 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.06157 * 0.02562 * 26 15 14 44 44 H 1.08998 * 109.91583 * 215.31824 * 27 13 12 45 45 H 1.09004 * 109.91554 * 94.02407 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3873 -2.5721 -1.1355 11 6 0.4357 -2.6504 1.3052 12 6 1.3597 -3.5225 2.1920 13 7 1.9632 -4.4725 1.2228 14 6 3.2003 -5.0560 1.7584 15 6 2.9314 -5.6396 3.1215 16 6 2.5309 -6.9584 3.2412 17 6 2.2828 -7.5007 4.4891 18 6 2.4334 -6.7277 5.6227 19 6 2.8366 -5.3988 5.5081 20 6 2.9996 -4.5630 6.7228 21 6 2.8500 -5.1386 7.9829 22 6 3.0056 -4.3462 9.1069 23 6 3.3055 -3.0023 8.9336 24 6 3.4399 -2.4971 7.6538 25 7 3.2924 -3.2750 6.6005 26 6 3.0907 -4.8592 4.2484 27 6 2.2346 -3.6841 0.0012 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2545 -1.8507 -1.1887 30 1 0.2630 -1.6783 1.7671 31 1 -0.5097 -3.1577 1.1126 32 1 2.1299 -2.9114 2.6624 33 1 0.7788 -4.0570 2.9437 34 1 3.5507 -5.8420 1.0894 35 1 3.9625 -4.2809 1.8390 36 1 2.4114 -7.5666 2.3569 37 1 1.9708 -8.5309 4.5767 38 1 2.2399 -7.1523 6.5967 39 1 2.6160 -6.1884 8.0810 40 1 2.8961 -4.7643 10.0966 41 1 3.4335 -2.3574 9.7904 42 1 3.6736 -1.4518 7.5155 43 1 3.4073 -3.8310 4.1541 44 1 2.0729 -4.3012 -0.8826 45 1 3.2603 -3.3154 0.0174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:12 Heat of formation + Delta-G solvation = 19.346743 kcal Electronic energy + Delta-G solvation = -26861.047497 eV Core-core repulsion = 23229.082193 eV Total energy + Delta-G solvation = -3631.965304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48110 -39.21367 -37.89840 -34.96504 -33.06942 -32.66616 -32.06775 -31.53537 -29.71477 -28.92675 -27.70364 -25.56897 -24.22725 -24.10615 -23.44432 -21.63745 -21.01996 -19.86840 -19.30255 -17.47779 -16.98827 -16.42991 -16.09841 -15.91498 -15.37122 -15.02018 -14.78940 -14.47548 -14.25895 -14.12359 -13.75756 -13.39580 -13.32790 -13.16013 -12.87173 -12.58815 -12.46051 -12.13729 -11.96426 -11.53481 -11.24523 -11.20571 -11.04555 -10.82972 -10.60070 -10.49690 -10.38646 -10.27008 -10.13873 -9.94758 -9.74586 -9.54805 -9.10051 -8.73496 -8.55354 -8.24487 -8.03509 -7.64885 -6.17849 -4.27326 0.49393 1.09724 1.46400 1.77542 3.23942 3.30901 3.34211 3.54865 4.00087 4.07630 4.32158 4.44824 4.66222 4.81540 4.84115 4.91763 4.93725 4.99508 5.09869 5.21229 5.25699 5.46257 5.50695 5.58545 5.75591 5.80978 5.84379 5.88573 5.96605 6.05971 6.09844 6.15749 6.24653 6.34670 6.41245 6.53178 6.53902 6.59425 6.77206 6.80393 7.02424 7.06021 7.15038 7.43850 7.54827 7.63158 7.75847 7.85521 7.86792 8.24795 8.75781 9.41747 9.62343 10.88019 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003710 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.040551 B = 7545.677764 C = 9336.930520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.247 3.753 10 O -0.591 6.591 11 C -0.127 4.127 12 C 0.044 3.956 13 N -0.511 5.511 14 C 0.082 3.918 15 C -0.075 4.075 16 C -0.086 4.086 17 C -0.127 4.127 18 C -0.105 4.105 19 C -0.060 4.060 20 C 0.177 3.823 21 C -0.169 4.169 22 C -0.074 4.074 23 C -0.183 4.183 24 C 0.108 3.892 25 N -0.475 5.475 26 C -0.066 4.066 27 C 0.051 3.949 28 H 0.267 0.733 29 H 0.382 0.618 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.134 0.866 44 H 0.070 0.930 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 -11.223 16.811 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.207 3.793 10 O -0.400 6.400 11 C -0.166 4.166 12 C -0.084 4.084 13 N -0.235 5.235 14 C -0.046 4.046 15 C -0.076 4.076 16 C -0.105 4.105 17 C -0.145 4.145 18 C -0.124 4.124 19 C -0.061 4.061 20 C 0.042 3.958 21 C -0.188 4.188 22 C -0.100 4.100 23 C -0.203 4.203 24 C -0.050 4.050 25 N -0.184 5.184 26 C -0.085 4.085 27 C -0.076 4.076 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.152 0.848 44 H 0.088 0.912 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.621 -11.697 15.742 20.402 hybrid contribution 0.555 1.846 1.351 2.354 sum 6.176 -9.851 17.093 20.672 Atomic orbital electron populations 1.69625 1.05903 1.27420 1.50572 1.24998 0.94968 0.99373 0.93854 0.86501 0.79869 0.82849 0.78260 1.20449 1.21053 1.19849 1.21766 0.93369 0.90883 1.51211 0.92303 1.19342 0.86378 0.90825 0.82759 1.86094 1.51882 1.53712 1.48307 1.23010 0.96818 0.98632 0.98138 1.23118 0.97446 0.92960 0.94833 1.64955 1.22051 1.31451 1.05092 1.21253 0.92717 0.98887 0.91770 1.19861 0.98848 0.93928 0.94934 1.21169 0.97020 0.94859 0.97491 1.20987 1.01456 0.99807 0.92273 1.21098 0.99726 0.92839 0.98766 1.18415 1.03293 0.92957 0.91397 1.19854 0.94047 0.89902 0.92042 1.22082 1.02636 1.01432 0.92681 1.21511 0.95703 0.93782 0.98976 1.22178 1.02663 0.96373 0.99042 1.22798 0.94597 0.99782 0.87814 1.67696 1.11621 1.04678 1.34375 1.21302 0.96612 1.00021 0.90613 1.22844 0.98242 0.94646 0.91886 0.92265 0.76687 0.90241 0.93418 0.94016 0.92141 0.90315 0.93827 0.85672 0.85834 0.86041 0.84614 0.84821 0.84822 0.82491 0.84809 0.91188 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 10.41 55.43 0.58 -23.72 16 2 C 0.07 1.88 5.01 -17.82 -0.09 1.79 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.57 8.22 -34.44 -0.28 -14.85 16 8 H 0.06 1.60 7.34 -52.49 -0.39 1.22 16 9 C 0.25 6.35 0.99 -90.41 -0.09 6.26 16 10 O -0.59 -16.06 12.93 -35.23 -0.46 -16.51 16 11 C -0.13 -3.10 5.91 -24.87 -0.15 -3.25 16 12 C 0.04 0.93 4.97 -1.90 -0.01 0.92 16 13 N -0.51 -10.25 5.39 -231.89 -1.25 -11.50 16 14 C 0.08 1.36 5.18 -4.98 -0.03 1.33 16 15 C -0.08 -1.14 4.58 -104.67 -0.48 -1.62 16 16 C -0.09 -1.13 9.69 -39.52 -0.38 -1.52 16 17 C -0.13 -1.44 10.03 -39.63 -0.40 -1.84 16 18 C -0.11 -1.21 9.41 -39.25 -0.37 -1.58 16 19 C -0.06 -0.83 5.87 -104.90 -0.62 -1.45 16 20 C 0.18 2.38 6.72 -82.94 -0.56 1.82 16 21 C -0.17 -1.74 9.46 -39.11 -0.37 -2.11 16 22 C -0.07 -0.64 10.17 -39.32 -0.40 -1.04 16 23 C -0.18 -1.64 10.11 -39.37 -0.40 -2.04 16 24 C 0.11 1.23 11.17 -17.58 -0.20 1.03 16 25 N -0.48 -6.88 9.45 -9.78 -0.09 -6.97 16 26 C -0.07 -1.03 7.87 -39.24 -0.31 -1.34 16 27 C 0.05 1.15 6.17 -2.75 -0.02 1.14 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.38 10.50 7.05 45.56 0.32 10.82 16 30 H 0.08 2.10 6.77 -51.93 -0.35 1.74 16 31 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.04 0.90 7.10 -51.93 -0.37 0.53 16 33 H 0.06 1.23 7.74 -51.93 -0.40 0.83 16 34 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 35 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.05 6.21 -52.49 -0.33 0.72 16 39 H 0.14 1.06 6.22 -52.49 -0.33 0.73 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 43 H 0.13 2.27 6.89 -52.49 -0.36 1.91 16 44 H 0.07 1.58 7.96 -51.93 -0.41 1.16 16 45 H 0.04 0.99 6.81 -51.93 -0.35 0.63 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -30.34 363.22 -11.37 -41.71 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.46 Total: 13.93 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -5.14 Total: -18.33 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.77 Total: -42.19 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.46 Total: -16.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.34 -11.37 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.055 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds