Wall clock time and date at job start Tue Mar 31 2020 13:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48497 * 109.47043 * 269.99502 * 3 2 1 5 5 H 1.48504 * 109.47182 * 29.99301 * 3 2 1 6 6 H 1.48494 * 109.47333 * 149.99337 * 3 2 1 7 7 C 1.37875 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99621 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.27352 * 57.91432 * 9 7 2 11 11 C 1.54593 * 110.39309 * 295.76634 * 9 7 2 12 12 C 1.54943 * 102.91873 * 262.99816 * 11 9 7 13 13 N 1.48529 * 103.23110 * 322.58517 * 12 11 9 14 14 C 1.46896 * 111.00073 * 159.72217 * 13 12 11 15 15 C 1.50696 * 109.47263 * 52.60847 * 14 13 12 16 16 C 1.38342 * 119.94121 * 89.99878 * 15 14 13 17 17 C 1.38308 * 120.24976 * 179.97438 * 16 15 14 18 18 C 1.38032 * 120.12282 * 0.02562 * 17 16 15 19 19 C 1.39343 * 119.87503 * 359.97438 * 18 17 16 20 20 C 1.48341 * 120.12064 * 179.97438 * 19 18 17 21 21 C 1.39340 * 119.73222 * 5.00290 * 20 19 18 22 22 C 1.38400 * 119.07019 * 179.97438 * 21 20 19 23 23 C 1.38784 * 118.51107 * 0.02562 * 22 21 20 24 24 C 1.38252 * 119.36773 * 359.97438 * 23 22 21 25 25 N 1.31765 * 120.89073 * 359.72535 * 24 23 22 26 26 C 1.37999 * 119.93512 * 269.72318 * 15 14 13 27 27 C 1.47906 * 105.81645 * 39.20833 * 13 12 11 28 28 H 0.97006 * 120.00360 * 0.02562 * 1 2 3 29 29 H 0.96701 * 114.00257 * 302.08624 * 10 9 7 30 30 H 1.08999 * 110.72465 * 21.35870 * 11 9 7 31 31 H 1.09004 * 110.72424 * 144.46554 * 11 9 7 32 32 H 1.08995 * 110.66363 * 81.02624 * 12 11 9 33 33 H 1.09004 * 110.66427 * 204.15338 * 12 11 9 34 34 H 1.09002 * 109.47199 * 172.60745 * 14 13 12 35 35 H 1.09006 * 109.47203 * 292.60633 * 14 13 12 36 36 H 1.07995 * 119.87306 * 359.97438 * 16 15 14 37 37 H 1.07993 * 119.93666 * 180.02562 * 17 16 15 38 38 H 1.08000 * 120.06372 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.45936 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.74308 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.31650 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.55127 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.06157 * 0.02562 * 26 15 14 44 44 H 1.08998 * 109.91583 * 215.31824 * 27 13 12 45 45 H 1.09004 * 109.91554 * 94.02407 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3873 -2.5721 -1.1355 11 6 0.4357 -2.6504 1.3052 12 6 1.3597 -3.5225 2.1920 13 7 1.9632 -4.4725 1.2228 14 6 3.2003 -5.0560 1.7584 15 6 2.9314 -5.6396 3.1215 16 6 2.5309 -6.9584 3.2412 17 6 2.2828 -7.5007 4.4891 18 6 2.4334 -6.7277 5.6227 19 6 2.8366 -5.3988 5.5081 20 6 2.9996 -4.5630 6.7228 21 6 2.8500 -5.1386 7.9829 22 6 3.0056 -4.3462 9.1069 23 6 3.3055 -3.0023 8.9336 24 6 3.4399 -2.4971 7.6538 25 7 3.2924 -3.2750 6.6005 26 6 3.0907 -4.8592 4.2484 27 6 2.2346 -3.6841 0.0012 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2545 -1.8507 -1.1887 30 1 0.2630 -1.6783 1.7671 31 1 -0.5097 -3.1577 1.1126 32 1 2.1299 -2.9114 2.6624 33 1 0.7788 -4.0570 2.9437 34 1 3.5507 -5.8420 1.0894 35 1 3.9625 -4.2809 1.8390 36 1 2.4114 -7.5666 2.3569 37 1 1.9708 -8.5309 4.5767 38 1 2.2399 -7.1523 6.5967 39 1 2.6160 -6.1884 8.0810 40 1 2.8961 -4.7643 10.0966 41 1 3.4335 -2.3574 9.7904 42 1 3.6736 -1.4518 7.5155 43 1 3.4073 -3.8310 4.1541 44 1 2.0729 -4.3012 -0.8826 45 1 3.2603 -3.3154 0.0174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:11 Heat of formation + Delta-G solvation = -0.312202 kcal Electronic energy + Delta-G solvation = -26861.899973 eV Core-core repulsion = 23229.082193 eV Total energy + Delta-G solvation = -3632.817780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36224 -40.49090 -39.38842 -36.76481 -34.19347 -34.07987 -33.55486 -32.70240 -31.00498 -30.13516 -29.60541 -27.20539 -25.74713 -25.07920 -24.43990 -22.59433 -22.41591 -21.27410 -21.21265 -19.12951 -18.26191 -17.37116 -17.14748 -17.04935 -16.92391 -16.71321 -16.10773 -15.82471 -15.61442 -15.11271 -15.09471 -14.87303 -14.47993 -14.42156 -14.22694 -14.10847 -13.82863 -13.44385 -13.27161 -13.05395 -12.93281 -12.65393 -12.62614 -12.44354 -12.33796 -12.16090 -12.06491 -11.91459 -11.77120 -11.12700 -10.92427 -10.65505 -10.60858 -10.37538 -10.17064 -9.76297 -9.33136 -9.13669 -8.25105 -6.42581 -0.36416 0.34601 0.44556 0.88130 1.36683 1.37993 1.47677 2.34502 2.62726 2.97723 3.06863 3.22427 3.32086 3.61376 3.79758 4.00815 4.02007 4.06713 4.09250 4.12646 4.19030 4.23411 4.32298 4.38294 4.42993 4.48276 4.63054 4.67311 4.71903 4.75692 4.81810 4.92080 5.03761 5.06123 5.11236 5.18584 5.23388 5.25522 5.39030 5.50447 5.53772 5.58882 5.67879 5.72443 5.78589 5.82923 6.05599 6.14130 6.20712 6.63999 7.05650 7.29306 7.45343 8.79705 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003710 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.040551 B = 7545.677764 C = 9336.930520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.560 4.560 8 H 0.051 0.949 9 C 0.232 3.768 10 O -0.599 6.599 11 C -0.120 4.120 12 C 0.064 3.936 13 N -0.506 5.506 14 C 0.084 3.916 15 C -0.093 4.093 16 C -0.094 4.094 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.070 4.070 20 C 0.142 3.858 21 C -0.165 4.165 22 C -0.072 4.072 23 C -0.172 4.172 24 C 0.081 3.919 25 N -0.522 5.522 26 C -0.090 4.090 27 C 0.058 3.942 28 H 0.271 0.729 29 H 0.377 0.623 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.031 0.969 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -13.095 19.495 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.598 4.598 8 H 0.069 0.931 9 C 0.192 3.808 10 O -0.408 6.408 11 C -0.159 4.159 12 C -0.063 4.063 13 N -0.231 5.231 14 C -0.044 4.044 15 C -0.093 4.093 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.071 4.071 20 C 0.007 3.993 21 C -0.185 4.185 22 C -0.097 4.097 23 C -0.192 4.192 24 C -0.076 4.076 25 N -0.231 5.231 26 C -0.109 4.109 27 C -0.070 4.070 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.049 0.951 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.191 0.809 41 H 0.184 0.816 42 H 0.182 0.818 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.843 -13.582 18.426 23.625 hybrid contribution 0.489 2.425 0.629 2.552 sum 6.332 -11.157 19.055 22.971 Atomic orbital electron populations 1.69705 1.06837 1.28284 1.50236 1.25691 0.95826 1.02268 0.93247 0.85556 0.78619 0.79076 0.78393 1.19833 1.20279 1.19856 1.21967 0.93213 0.92205 1.52390 0.93069 1.19595 0.86803 0.91757 0.82634 1.86084 1.51984 1.53463 1.49247 1.22834 0.97037 0.97817 0.98247 1.22849 0.96499 0.92571 0.94428 1.64935 1.24097 1.30011 1.04036 1.21300 0.90723 0.98869 0.93470 1.19730 1.00916 0.95123 0.93562 1.21387 0.96781 0.93911 0.99158 1.21410 0.99636 1.01315 0.91198 1.21501 0.98013 0.91598 1.00608 1.18702 1.03061 0.94295 0.90996 1.20052 0.96178 0.89866 0.93207 1.22400 1.01412 1.02898 0.91755 1.22017 0.94078 0.93390 1.00240 1.22553 1.00543 0.97265 0.98820 1.23131 0.95614 1.00237 0.88630 1.67593 1.13142 1.05976 1.36399 1.21129 0.98700 0.98994 0.92093 1.22702 0.97219 0.93856 0.93196 0.91962 0.77301 0.92831 0.94098 0.95262 0.91224 0.88231 0.95062 0.84285 0.82162 0.82546 0.81874 0.80903 0.81611 0.81753 0.87872 0.91083 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.53 10.41 21.45 0.22 -50.31 16 2 C 0.03 1.65 5.01 84.65 0.42 2.07 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.56 -31.52 8.22 25.60 0.21 -31.31 16 8 H 0.05 2.88 7.34 -2.91 -0.02 2.86 16 9 C 0.23 12.32 0.99 -10.66 -0.01 12.31 16 10 O -0.60 -33.52 12.93 -148.98 -1.93 -35.45 16 11 C -0.12 -6.12 5.91 31.80 0.19 -5.93 16 12 C 0.06 2.83 4.97 86.65 0.43 3.26 16 13 N -0.51 -20.69 5.39 -887.56 -4.78 -25.48 16 14 C 0.08 2.83 5.18 85.56 0.44 3.28 16 15 C -0.09 -2.84 4.58 -19.90 -0.09 -2.93 16 16 C -0.09 -2.28 9.69 22.31 0.22 -2.07 16 17 C -0.12 -2.28 10.03 22.24 0.22 -2.05 16 18 C -0.10 -1.99 9.41 22.49 0.21 -1.78 16 19 C -0.07 -1.91 5.87 -20.05 -0.12 -2.03 16 20 C 0.14 3.78 6.72 41.98 0.28 4.06 16 21 C -0.17 -2.97 9.46 22.57 0.21 -2.75 16 22 C -0.07 -1.00 10.17 22.44 0.23 -0.77 16 23 C -0.17 -2.70 10.11 22.40 0.23 -2.48 16 24 C 0.08 1.86 11.17 84.71 0.95 2.81 16 25 N -0.52 -15.74 9.45 -184.85 -1.75 -17.48 16 26 C -0.09 -2.91 7.87 22.49 0.18 -2.73 16 27 C 0.06 2.68 6.17 86.45 0.53 3.22 16 28 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 29 H 0.38 21.43 7.05 -74.06 -0.52 20.91 16 30 H 0.05 2.96 6.77 -2.39 -0.02 2.94 16 31 H 0.04 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.03 1.35 7.10 -2.39 -0.02 1.33 16 33 H 0.07 2.92 7.74 -2.39 -0.02 2.90 16 34 H 0.10 2.91 8.08 -2.39 -0.02 2.89 16 35 H 0.03 1.13 7.75 -2.38 -0.02 1.11 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 37 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.16 1.98 6.21 -2.91 -0.02 1.96 16 39 H 0.16 1.85 6.22 -2.91 -0.02 1.83 16 40 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.10 3.88 6.89 -2.91 -0.02 3.86 16 44 H 0.07 3.24 7.96 -2.39 -0.02 3.22 16 45 H 0.04 1.96 6.81 -2.38 -0.02 1.94 16 Total: -1.00 -68.91 363.22 -0.98 -69.89 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.49 Total: 38.98 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.74 Total: -25.83 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -6.31 Total: -93.27 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.93 Total: -35.45 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.91 -0.98 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.581 kcal (2) G-P(sol) polarization free energy of solvation -68.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds