Wall clock time and date at job start Tue Mar 31 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38223 * 120.41681 * 2 1 4 4 N 1.31867 * 120.75909 * 179.74617 * 3 2 1 5 5 C 1.31879 * 121.72312 * 0.56791 * 4 3 2 6 6 C 1.50704 * 119.61319 * 179.71229 * 5 4 3 7 7 C 1.53002 * 109.46864 * 269.72559 * 6 5 4 8 8 N 1.46500 * 109.47225 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00326 * 179.97438 * 8 7 6 10 10 O 1.21549 * 119.99648 * 359.97438 * 9 8 7 11 11 C 1.47880 * 120.00296 * 179.97438 * 9 8 7 12 12 C 1.39929 * 120.02417 * 359.97438 * 11 9 8 13 13 C 1.38330 * 120.35752 * 180.02562 * 12 11 9 14 14 C 1.37752 * 120.41366 * 359.97438 * 13 12 11 15 15 C 1.40755 * 120.03886 * 0.02562 * 14 13 12 16 16 C 1.41435 * 120.17700 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00074 * 335.20949 * 16 15 14 18 18 C 1.39934 * 120.00191 * 155.21234 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.28913 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.28750 * 18 16 15 21 21 H 1.48506 * 109.47124 * 59.99913 * 20 18 16 22 22 H 1.48500 * 109.47358 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47416 * 300.00115 * 20 18 16 24 24 C 1.38998 * 120.02842 * 180.02562 * 11 9 8 25 25 C 1.38179 * 120.76653 * 359.42947 * 5 4 3 26 26 C 1.50706 * 120.41569 * 180.29515 * 25 5 4 27 27 C 1.38627 * 120.41891 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47402 * 269.97668 * 1 2 3 29 29 H 1.09002 * 109.47133 * 29.97688 * 1 2 3 30 30 H 1.08998 * 109.47127 * 149.97659 * 1 2 3 31 31 H 1.07997 * 119.62237 * 0.04208 * 3 2 1 32 32 H 1.09001 * 109.47237 * 149.72784 * 6 5 4 33 33 H 1.09001 * 109.47313 * 29.72221 * 6 5 4 34 34 H 1.09001 * 109.47010 * 60.00086 * 7 6 5 35 35 H 1.09001 * 109.46880 * 299.99927 * 7 6 5 36 36 H 0.97008 * 119.99911 * 0.02562 * 8 7 6 37 37 H 1.08003 * 119.81711 * 0.04656 * 12 11 9 38 38 H 1.07995 * 119.79038 * 179.97438 * 13 12 11 39 39 H 1.07999 * 119.98175 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.19752 * 0.25315 * 24 11 9 42 42 H 1.09007 * 109.46834 * 90.00421 * 26 25 5 43 43 H 1.09000 * 109.47194 * 210.00086 * 26 25 5 44 44 H 1.08995 * 109.47391 * 330.00469 * 26 25 5 45 45 H 1.08001 * 120.79561 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 0.0050 5 6 4.2256 0.0823 -0.0009 6 6 5.7312 0.1468 -0.0013 7 6 6.2403 0.1690 -1.4440 8 7 7.7040 0.2311 -1.4445 9 6 8.3769 0.2596 -2.6119 10 8 7.7694 0.2332 -3.6644 11 6 9.8544 0.3228 -2.6124 12 6 10.5543 0.3537 -1.4011 13 6 11.9363 0.4134 -1.3935 14 6 12.6395 0.4427 -2.5777 15 6 11.9528 0.4124 -3.8059 16 6 12.6719 0.4417 -5.0235 17 1 13.6602 0.8762 -5.0566 18 6 12.1030 -0.0921 -6.1852 19 7 11.0875 -0.9125 -6.0989 20 14 12.7933 0.3667 -7.8591 21 1 14.2185 -0.0437 -7.9363 22 1 12.0207 -0.3274 -8.9205 23 1 12.6902 1.8356 -8.0515 24 6 10.5489 0.3528 -3.8161 25 6 3.5947 -1.1471 -0.0009 26 6 4.4027 -2.4192 -0.0010 27 6 2.2089 -1.1954 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6674 2.1276 0.0007 32 1 6.1325 -0.7269 0.5122 33 1 6.0563 1.0515 0.5125 34 1 5.8390 1.0427 -1.9575 35 1 5.9152 -0.7357 -1.9579 36 1 8.1889 0.2510 -0.6046 37 1 10.0125 0.3304 -0.4671 38 1 12.4671 0.4373 -0.4534 39 1 13.7184 0.4889 -2.5636 40 1 10.6934 -1.2828 -6.9041 41 1 10.0126 0.3341 -4.7532 42 1 4.5975 -2.7260 1.0267 43 1 3.8461 -3.2031 -0.5148 44 1 5.3487 -2.2489 -0.5148 45 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594105542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:34 Heat of formation + Delta-G solvation = -4.418954 kcal Electronic energy + Delta-G solvation = -25560.244452 eV Core-core repulsion = 21927.248591 eV Total energy + Delta-G solvation = -3632.995862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74276 -39.14552 -37.05759 -35.63250 -33.89844 -33.83423 -33.59635 -30.98297 -29.74223 -29.39926 -27.70681 -26.76093 -25.29108 -23.98644 -22.69305 -21.83881 -20.99015 -20.83370 -19.50020 -17.74131 -17.23835 -16.43852 -16.23477 -15.39339 -15.10993 -15.03655 -14.75799 -14.63444 -14.52858 -13.77988 -13.58382 -13.46842 -13.35230 -13.20179 -12.91611 -12.86392 -12.75668 -12.62502 -12.56548 -12.45735 -11.85211 -11.65436 -11.54278 -11.31790 -11.12982 -11.05126 -10.72918 -10.49158 -10.01893 -9.79424 -9.68199 -9.62091 -9.19697 -9.03487 -8.82460 -8.64521 -7.61399 -7.50740 -6.78812 -4.40138 0.82883 1.04786 2.23059 2.83559 3.08537 3.10235 3.17969 3.41635 3.68803 3.88985 3.93597 4.16117 4.43222 4.49163 4.61154 4.65699 4.71833 4.89428 4.99638 5.12627 5.14670 5.19487 5.30260 5.36130 5.47662 5.51487 5.61835 5.67945 5.71543 5.80005 5.88689 6.00664 6.05897 6.08525 6.15372 6.28790 6.50061 6.73216 6.86315 7.00033 7.03236 7.22481 7.39488 7.71479 7.77177 7.80588 7.93937 8.10977 8.20689 8.51741 8.81439 8.84830 8.97516 10.16054 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.002268 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.007621 B =12344.986124 C =13055.418507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.141 4.141 3 C 0.094 3.906 4 N -0.472 5.472 5 C 0.130 3.870 6 C -0.084 4.084 7 C 0.131 3.869 8 N -0.737 5.737 9 C 0.564 3.436 10 O -0.546 6.546 11 C -0.127 4.127 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.079 4.079 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.133 0.867 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.986 -1.645 12.728 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.143 4.143 3 C -0.063 4.063 4 N -0.179 5.179 5 C -0.009 4.009 6 C -0.122 4.122 7 C 0.007 3.993 8 N -0.391 5.391 9 C 0.355 3.645 10 O -0.424 6.424 11 C -0.131 4.131 12 C -0.238 4.238 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.408 5.408 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.175 4.175 27 C -0.104 4.104 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.171 0.829 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.151 0.849 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.154 -1.019 11.811 20.852 hybrid contribution -0.092 -0.694 -0.276 0.752 sum -17.246 -1.713 11.536 20.819 Atomic orbital electron populations 1.20707 0.90239 1.03158 1.02484 1.20925 0.97546 0.94203 1.01596 1.22628 0.89662 0.97479 0.96567 1.67493 1.08237 1.30820 1.11385 1.20851 0.95904 0.87946 0.96176 1.20741 0.89194 1.04419 0.97860 1.21083 0.80977 1.02430 0.94851 1.45919 1.06076 1.77741 1.09399 1.18843 0.88416 0.74624 0.82652 1.90700 1.70381 1.49862 1.31426 1.19466 0.90007 1.08260 0.95329 1.20343 0.94138 1.14669 0.94657 1.20433 0.93645 1.00901 0.96627 1.21098 0.97873 1.11810 0.92418 1.17600 0.91478 0.88803 0.92516 1.19553 1.02755 1.34296 0.92311 0.90107 1.25967 0.94235 0.92764 1.01655 1.69784 1.19013 1.20073 1.31897 0.86323 0.79711 0.80053 0.80419 1.18974 1.20239 1.18709 1.21627 0.94033 0.99315 0.96228 1.20758 0.94518 0.96555 1.00765 1.20860 1.00192 0.93663 1.02760 1.21367 0.93257 0.98224 0.97578 0.90982 0.91128 0.91372 0.82876 0.89357 0.89167 0.91459 0.91813 0.76521 0.89190 0.88898 0.88626 0.90391 0.84912 0.90692 0.91157 0.90339 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.04 36.00 0.36 -0.25 16 2 C -0.14 -1.24 5.90 -104.48 -0.62 -1.85 16 3 C 0.09 0.97 10.86 -17.54 -0.19 0.78 16 4 N -0.47 -6.01 10.27 -9.47 -0.10 -6.10 16 5 C 0.13 1.54 6.03 -82.59 -0.50 1.04 16 6 C -0.08 -0.94 4.93 -27.88 -0.14 -1.08 16 7 C 0.13 1.93 5.52 -4.04 -0.02 1.91 16 8 N -0.74 -12.32 5.51 -61.24 -0.34 -12.66 16 9 C 0.56 12.56 7.77 -12.31 -0.10 12.46 16 10 O -0.55 -14.05 16.33 5.32 0.09 -13.97 16 11 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 12 C -0.22 -4.57 9.55 -38.91 -0.37 -4.94 16 13 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 14 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 15 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 16 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 17 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.78 -20.93 10.97 55.55 0.61 -20.32 16 20 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 25 C -0.12 -1.27 5.90 -104.48 -0.62 -1.88 16 26 C -0.12 -0.98 9.21 36.01 0.33 -0.65 16 27 C -0.08 -0.71 9.55 -39.28 -0.37 -1.08 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.09 0.82 6.69 -51.93 -0.35 0.47 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.98 7.41 -51.93 -0.38 0.59 16 36 H 0.40 5.63 6.49 -40.82 -0.26 5.36 16 37 H 0.09 1.54 6.38 -52.48 -0.33 1.20 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 41 H 0.13 3.88 5.77 -52.49 -0.30 3.57 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.08 0.72 5.87 -51.93 -0.31 0.42 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -31.85 376.79 -10.19 -42.04 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.13 Total: 10.02 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -4.97 Total: -18.60 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.18 Total: -39.08 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.85 -10.19 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594105542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.618 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds