Wall clock time and date at job start Tue Mar 31 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38328 * 119.87222 * 2 1 4 4 C 1.38017 * 120.12237 * 179.97438 * 3 2 1 5 5 C 1.39355 * 119.87688 * 359.97438 * 4 3 2 6 6 C 1.48354 * 120.12636 * 179.97438 * 5 4 3 7 7 N 1.31211 * 119.87500 * 322.13797 * 6 5 4 8 8 N 1.28382 * 122.30255 * 179.71679 * 7 6 5 9 9 C 1.46501 * 119.11327 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47320 * 269.05945 * 9 8 7 11 11 C 1.50704 * 115.54516 * 272.00977 * 10 9 8 12 12 H 1.08008 * 119.99850 * 121.26434 * 11 10 9 13 13 C 1.37874 * 120.00287 * 301.26350 * 11 10 9 14 14 N 1.31521 * 119.99749 * 352.63471 * 13 11 10 15 15 Si 1.86794 * 120.00330 * 172.63591 * 13 11 10 16 16 H 1.48498 * 109.47163 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47019 * 119.99840 * 15 13 11 18 18 H 1.48495 * 109.47304 * 239.99811 * 15 13 11 19 19 C 1.52994 * 117.50235 * 126.30031 * 10 9 8 20 20 C 1.52996 * 117.49929 * 57.67187 * 10 9 8 21 21 C 1.34619 * 121.77914 * 0.02562 * 8 7 6 22 22 O 1.22053 * 120.23987 * 180.02562 * 21 8 7 23 23 C 1.41244 * 119.51416 * 359.97438 * 21 8 7 24 24 C 1.36365 * 117.91124 * 0.02562 * 23 21 8 25 25 C 1.50698 * 120.88067 * 180.02562 * 24 23 21 26 26 C 1.39361 * 119.75474 * 0.25111 * 5 4 3 27 27 C 1.38021 * 119.87187 * 359.49554 * 26 5 4 28 28 H 1.09004 * 109.46635 * 90.00565 * 1 2 3 29 29 H 1.09001 * 109.46575 * 209.99986 * 1 2 3 30 30 H 1.08991 * 109.47380 * 329.99976 * 1 2 3 31 31 H 1.07998 * 119.94350 * 359.95179 * 3 2 1 32 32 H 1.07997 * 120.06212 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46899 * 29.05272 * 9 8 7 34 34 H 1.08994 * 109.47473 * 149.05703 * 9 8 7 35 35 H 0.97000 * 120.00026 * 185.02748 * 14 13 11 36 36 H 1.08998 * 117.50153 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.49850 * 145.02554 * 19 10 9 38 38 H 1.09001 * 117.50003 * 214.98297 * 20 10 9 39 39 H 1.09000 * 117.50065 * 0.02562 * 20 10 9 40 40 H 1.08003 * 121.04510 * 179.97438 * 23 21 8 41 41 H 1.08997 * 109.47653 * 267.67551 * 25 24 23 42 42 H 1.09005 * 109.46747 * 27.67944 * 25 24 23 43 43 H 1.09002 * 109.47189 * 147.67214 * 25 24 23 44 44 H 1.08000 * 120.06570 * 179.72231 * 26 5 4 45 45 H 1.07999 * 119.93592 * 180.25206 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1995 0.0000 4 6 3.5761 1.2055 0.0005 5 6 4.2756 0.0002 0.0016 6 6 5.7591 0.0002 0.0016 7 7 6.4127 0.8979 -0.6975 8 7 7.6953 0.9441 -0.7267 9 6 8.3533 1.9769 -1.5309 10 6 8.6096 1.4396 -2.9403 11 6 9.9125 0.7061 -3.1292 12 1 9.9106 -0.3199 -3.4667 13 6 11.1069 1.3447 -2.8712 14 7 11.1194 2.6319 -2.6012 15 14 12.7073 0.3819 -2.9051 16 1 12.4235 -1.0386 -3.2319 17 1 13.6085 0.9560 -3.9363 18 1 13.3621 0.4631 -1.5748 19 6 8.0862 2.2652 -4.1172 20 6 7.4010 0.9501 -3.7404 21 6 8.4521 0.0691 -0.0383 22 8 9.6697 0.1391 -0.0858 23 6 7.8268 -0.9298 0.7403 24 6 6.4637 -0.9640 0.7596 25 6 5.7274 -2.0009 1.5681 26 6 3.5763 -1.2052 -0.0032 27 6 2.1961 -1.1993 0.0016 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6530 2.1330 -0.0008 32 1 4.1130 2.1426 0.0001 33 1 7.7116 2.8561 -1.5884 34 1 9.3016 2.2489 -1.0676 35 1 11.9640 3.0963 -2.4917 36 1 7.5587 3.1910 -3.8874 37 1 8.6841 2.2781 -5.0284 38 1 7.5482 0.0978 -4.4038 39 1 6.4230 1.0111 -3.2629 40 1 8.4099 -1.6446 1.3020 41 1 5.5179 -2.8683 0.9421 42 1 6.3419 -2.3044 2.4157 43 1 4.7898 -1.5801 1.9313 44 1 4.1133 -2.1423 -0.0069 45 1 1.6532 -2.1329 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596286233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:04 Heat of formation + Delta-G solvation = 59.596215 kcal Electronic energy + Delta-G solvation = -27420.851422 eV Core-core repulsion = 23790.631467 eV Total energy + Delta-G solvation = -3630.219956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.94607 -40.31394 -38.61789 -38.56308 -36.43005 -34.12238 -33.96476 -32.43047 -31.67927 -30.12812 -28.39231 -27.67632 -26.89012 -25.08672 -23.54055 -23.16568 -22.96509 -22.06656 -21.19953 -19.34477 -18.78110 -18.07436 -17.33064 -17.05272 -16.67512 -16.29468 -16.05004 -15.95815 -15.56566 -15.02683 -14.80198 -14.65573 -14.46672 -14.32177 -14.10854 -13.95652 -13.75232 -13.58201 -13.37697 -13.20453 -13.04452 -12.90088 -12.78966 -12.66218 -12.47592 -12.34209 -12.14755 -11.91429 -11.78900 -11.57201 -10.99278 -10.80974 -10.65600 -10.55700 -10.14458 -9.81283 -9.75720 -8.93407 -8.17308 -6.21712 -0.36152 0.08881 0.57914 0.99498 1.29134 1.37313 1.41482 1.43155 2.38415 2.49574 2.92605 3.10036 3.12028 3.46466 3.58735 3.72447 3.81525 4.06583 4.13422 4.14310 4.19882 4.34238 4.44035 4.46819 4.55855 4.58888 4.61630 4.74534 4.77207 4.83767 4.87597 4.92491 4.95215 4.95923 5.01729 5.11734 5.15492 5.20395 5.26337 5.32565 5.37412 5.44676 5.51011 5.58991 5.69743 5.73839 5.77471 6.14111 6.29313 6.72244 6.80569 7.38889 7.43897 8.91653 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.003638 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.781754 B = 7694.746487 C = 8548.675490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.098 4.098 5 C -0.045 4.045 6 C 0.078 3.922 7 N -0.222 5.222 8 N -0.329 5.329 9 C 0.164 3.836 10 C 0.009 3.991 11 C -0.494 4.494 12 H 0.034 0.966 13 C 0.045 3.955 14 N -0.902 5.902 15 Si 0.940 3.060 16 H -0.277 1.277 17 H -0.271 1.271 18 H -0.289 1.289 19 C -0.161 4.161 20 C -0.182 4.182 21 C 0.455 3.545 22 O -0.561 6.561 23 C -0.219 4.219 24 C -0.012 4.012 25 C -0.118 4.118 26 C -0.097 4.097 27 C -0.121 4.121 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.261 0.739 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.174 0.826 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.148 0.852 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.855 -7.792 9.423 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.118 4.118 5 C -0.047 4.047 6 C -0.090 4.090 7 N -0.046 5.046 8 N -0.148 5.148 9 C 0.044 3.956 10 C 0.007 3.993 11 C -0.531 4.531 12 H 0.052 0.948 13 C -0.156 4.156 14 N -0.540 5.540 15 Si 0.767 3.233 16 H -0.202 1.202 17 H -0.196 1.196 18 H -0.216 1.216 19 C -0.199 4.199 20 C -0.219 4.219 21 C 0.255 3.745 22 O -0.441 6.441 23 C -0.249 4.249 24 C -0.018 4.018 25 C -0.174 4.174 26 C -0.116 4.116 27 C -0.139 4.139 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.192 0.808 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.165 0.835 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.013 -6.834 8.911 25.606 hybrid contribution 2.128 -0.487 0.106 2.186 sum -20.884 -7.322 9.017 23.897 Atomic orbital electron populations 1.20870 0.89199 1.03917 1.03105 1.20388 0.97609 0.92848 0.97282 1.21180 0.93067 0.99045 1.01358 1.21262 0.94931 0.97059 0.98540 1.18053 0.86627 0.95178 1.04800 1.20637 0.94855 0.94657 0.98883 1.70941 0.94919 1.22508 1.16189 1.46889 1.01760 1.28088 1.38051 1.21430 0.96189 0.86427 0.91521 1.19108 0.92366 0.99891 0.87914 1.20445 0.90384 0.97072 1.45217 0.94795 1.25337 1.01158 0.95449 0.93633 1.69949 1.26697 1.08663 1.48729 0.85794 0.80984 0.79292 0.77267 1.20185 1.19588 1.21590 1.22795 1.03065 0.93488 1.00563 1.22809 0.96546 0.97689 1.04861 1.18710 0.88567 0.84556 0.82655 1.90998 1.14175 1.73294 1.65609 1.22624 0.95638 1.01678 1.04913 1.21372 0.92903 0.94743 0.92782 1.21262 1.00969 0.95856 0.99290 1.21547 0.94809 0.96996 0.98245 1.21267 0.93191 0.98806 1.00597 0.90477 0.89992 0.90832 0.84400 0.86926 0.90316 0.89529 0.92947 0.89647 0.90958 0.91064 0.89337 0.80817 0.87297 0.88940 0.88555 0.83482 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.08 -1.16 5.88 -19.82 -0.12 -1.28 16 3 C -0.13 -2.29 9.68 22.24 0.22 -2.07 16 4 C -0.10 -2.28 9.60 22.49 0.22 -2.06 16 5 C -0.04 -1.06 5.30 -20.04 -0.11 -1.17 16 6 C 0.08 2.38 6.53 42.72 0.28 2.65 16 7 N -0.22 -8.43 9.73 -48.02 -0.47 -8.90 16 8 N -0.33 -14.84 3.07 -472.40 -1.45 -16.29 16 9 C 0.16 8.23 5.33 86.38 0.46 8.69 16 10 C 0.01 0.44 1.64 -52.93 -0.09 0.36 16 11 C -0.49 -29.23 8.30 25.60 0.21 -29.01 16 12 H 0.03 2.09 7.83 -2.91 -0.02 2.06 16 13 C 0.05 2.67 5.17 84.65 0.44 3.11 16 14 N -0.90 -53.87 12.09 21.45 0.26 -53.61 16 15 Si 0.94 48.54 29.55 68.60 2.03 50.57 16 16 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 17 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 19 C -0.16 -7.53 9.88 30.59 0.30 -7.23 16 20 C -0.18 -8.26 9.69 30.59 0.30 -7.96 16 21 C 0.46 21.25 7.46 85.00 0.63 21.89 16 22 O -0.56 -31.64 16.06 -5.49 -0.09 -31.73 16 23 C -0.22 -7.54 9.80 22.57 0.22 -7.32 16 24 C -0.01 -0.33 5.88 -19.51 -0.11 -0.45 16 25 C -0.12 -1.74 8.25 71.24 0.59 -1.16 16 26 C -0.10 -1.67 7.72 22.49 0.17 -1.49 16 27 C -0.12 -1.65 9.68 22.24 0.22 -1.44 16 28 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.11 2.85 8.01 -2.91 -0.02 2.82 16 33 H 0.08 3.62 7.88 -2.39 -0.02 3.60 16 34 H 0.09 5.02 5.95 -2.39 -0.01 5.00 16 35 H 0.26 14.92 8.32 -92.71 -0.77 14.15 16 36 H 0.09 3.63 8.04 -2.39 -0.02 3.61 16 37 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.74 7.39 -2.39 -0.02 3.72 16 40 H 0.17 5.06 8.06 -2.91 -0.02 5.04 16 41 H 0.11 1.16 7.06 -2.39 -0.02 1.14 16 42 H 0.09 1.11 8.08 -2.38 -0.02 1.10 16 43 H 0.10 1.22 6.28 -2.39 -0.01 1.20 16 44 H 0.15 1.96 5.60 -2.91 -0.02 1.94 16 45 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -75.71 372.82 5.82 -69.89 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.00 Total: 16.27 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.54 Total: -26.20 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -1.66 Total: -78.79 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.09 Total: -31.73 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -75.71 5.82 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596286233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.484 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds