Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30822 * 119.22871 * 2 1 4 4 C 1.33797 * 121.71986 * 180.23464 * 3 2 1 5 5 C 1.40527 * 120.82010 * 179.72786 * 4 3 2 6 6 C 1.36120 * 119.81730 * 180.02562 * 5 4 3 7 7 C 1.39346 * 121.09214 * 359.95310 * 6 5 4 8 8 C 1.36140 * 120.84099 * 0.04657 * 7 6 5 9 9 C 1.40559 * 119.61676 * 359.97438 * 8 7 6 10 10 C 1.40490 * 121.23639 * 179.97438 * 9 8 7 11 11 C 1.39046 * 117.96348 * 180.02562 * 10 9 8 12 12 C 1.47759 * 120.26664 * 179.97438 * 11 10 9 13 13 O 1.21561 * 120.00326 * 235.39835 * 12 11 10 14 14 N 1.34775 * 119.99773 * 55.39229 * 12 11 10 15 15 C 1.46920 * 120.63238 * 355.99771 * 14 12 11 16 16 C 1.53196 * 108.77751 * 126.43068 * 15 14 12 17 17 C 1.53043 * 109.31122 * 54.63403 * 16 15 14 18 18 C 1.53038 * 109.53929 * 298.63553 * 17 16 15 19 19 H 1.08997 * 109.50141 * 301.38200 * 18 17 16 20 20 C 1.50698 * 109.50000 * 181.31515 * 18 17 16 21 21 H 1.08001 * 119.99855 * 0.06654 * 20 18 17 22 22 C 1.37876 * 120.00299 * 179.78687 * 20 18 17 23 23 N 1.31514 * 120.00050 * 0.28049 * 22 20 18 24 24 Si 1.86796 * 120.00058 * 180.27609 * 22 20 18 25 25 H 1.48500 * 109.47247 * 90.00488 * 24 22 20 26 26 H 1.48505 * 109.47197 * 210.00138 * 24 22 20 27 27 H 1.48495 * 109.47280 * 330.00359 * 24 22 20 28 28 C 1.46938 * 120.60131 * 176.01646 * 14 12 11 29 29 H 1.08996 * 109.47084 * 274.39991 * 1 2 3 30 30 H 1.08996 * 109.47213 * 34.40687 * 1 2 3 31 31 H 1.08999 * 109.46760 * 154.40558 * 1 2 3 32 32 H 1.07998 * 120.08916 * 0.02785 * 5 4 3 33 33 H 1.08003 * 119.45541 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.58150 * 180.02562 * 7 6 5 35 35 H 1.07992 * 120.19619 * 179.97438 * 8 7 6 36 36 H 1.08005 * 121.01861 * 0.05007 * 10 9 8 37 37 H 1.09001 * 109.58802 * 6.64641 * 15 14 12 38 38 H 1.09001 * 109.59167 * 246.21553 * 15 14 12 39 39 H 1.08998 * 109.49804 * 294.68692 * 16 15 14 40 40 H 1.09001 * 109.50135 * 174.58873 * 16 15 14 41 41 H 1.09007 * 109.45961 * 178.61624 * 17 16 15 42 42 H 1.08994 * 109.44699 * 58.65331 * 17 16 15 43 43 H 0.96993 * 120.00572 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.56315 * 113.77013 * 28 14 12 45 45 H 1.08998 * 109.61715 * 353.34001 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1998 -0.0047 5 6 4.1493 2.4368 -0.0103 6 6 5.5101 2.4721 -0.0155 7 6 6.2604 1.2980 -0.0144 8 6 5.6513 0.0804 -0.0090 9 6 4.2477 0.0059 -0.0039 10 6 3.5839 -1.2322 0.0012 11 6 2.1935 -1.2265 0.0055 12 6 1.4435 -2.4997 0.0104 13 8 0.6172 -2.7217 -0.8531 14 7 1.6757 -3.4148 0.9722 15 6 2.7315 -3.1997 1.9710 16 6 2.1241 -3.3451 3.3698 17 6 1.4227 -4.7010 3.4786 18 6 0.2915 -4.7760 2.4506 19 1 -0.4148 -3.9648 2.6269 20 6 -0.4191 -6.0986 2.5803 21 1 -0.0971 -6.8141 3.3225 22 6 -1.4839 -6.3930 1.7553 23 7 -1.8760 -5.5218 0.8515 24 14 -2.3695 -8.0293 1.9213 25 1 -3.4823 -7.8933 2.8952 26 1 -2.9146 -8.4333 0.6003 27 1 -1.4160 -9.0619 2.4002 28 6 0.8775 -4.6465 1.0411 29 1 -0.3633 0.0788 1.0246 30 1 -0.3633 0.8478 -0.5807 31 1 -0.3633 -0.9268 -0.4440 32 1 3.5837 3.3568 -0.0105 33 1 6.0165 3.4260 -0.0203 34 1 7.3390 1.3545 -0.0182 35 1 6.2431 -0.8229 -0.0086 36 1 4.1367 -2.1601 0.0022 37 1 3.1458 -2.1982 1.8549 38 1 3.5190 -3.9411 1.8358 39 1 1.4008 -2.5470 3.5371 40 1 2.9144 -3.2832 4.1179 41 1 1.0107 -4.8173 4.4811 42 1 2.1413 -5.4977 3.2867 43 1 -2.6248 -5.7289 0.2709 44 1 1.5136 -5.5059 0.8295 45 1 0.0686 -4.5997 0.3119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = 13.438068 kcal Electronic energy + Delta-G solvation = -27483.157386 eV Core-core repulsion = 23850.935863 eV Total energy + Delta-G solvation = -3632.221523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12999 -39.41445 -37.39877 -36.57761 -34.00866 -33.14169 -31.93868 -31.82505 -30.43107 -29.63367 -27.83056 -25.52179 -25.11862 -23.66587 -22.67670 -22.30794 -21.76887 -20.34054 -18.81782 -18.13605 -17.20726 -16.69673 -16.16597 -15.92302 -15.37179 -14.90076 -14.67391 -14.46788 -14.39402 -14.04367 -13.76174 -13.65416 -13.37241 -12.99810 -12.95607 -12.70092 -12.64205 -12.25518 -12.06420 -11.85219 -11.78038 -11.57687 -11.35888 -11.07992 -11.00323 -10.65641 -10.53755 -10.30920 -10.26130 -9.94587 -9.81152 -9.32591 -9.18126 -8.93767 -8.71212 -8.47019 -8.36980 -7.84293 -6.03684 -4.12232 0.18028 0.60665 1.79137 2.62641 3.15319 3.29113 3.36630 3.38500 3.58997 3.96105 4.11912 4.39514 4.40659 4.55743 4.63568 4.65756 4.90971 4.97507 5.06978 5.24432 5.27431 5.29244 5.43277 5.53777 5.60872 5.70119 5.75433 5.79049 5.84741 5.92290 5.98080 6.12173 6.16169 6.21205 6.25442 6.28638 6.46791 6.54779 6.60414 6.70070 6.79884 6.91812 7.07132 7.17956 7.57980 7.81073 7.85697 7.94395 8.13516 8.33542 8.69443 8.91833 9.53709 11.01873 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003260 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.024894 B = 8586.668536 C = 9187.705913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.208 3.792 3 N -0.482 5.482 4 C 0.142 3.858 5 C -0.098 4.098 6 C -0.098 4.098 7 C -0.126 4.126 8 C -0.086 4.086 9 C -0.114 4.114 10 C -0.027 4.027 11 C -0.163 4.163 12 C 0.554 3.446 13 O -0.524 6.524 14 N -0.594 5.594 15 C 0.101 3.899 16 C -0.133 4.133 17 C -0.111 4.111 18 C 0.040 3.960 19 H 0.030 0.970 20 C -0.521 4.521 21 H 0.058 0.942 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.113 3.887 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.045 0.955 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.631 13.223 -0.109 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.056 3.944 3 N -0.191 5.191 4 C 0.020 3.980 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.144 4.144 8 C -0.105 4.105 9 C -0.116 4.116 10 C -0.054 4.054 11 C -0.168 4.168 12 C 0.340 3.660 13 O -0.401 6.401 14 N -0.326 5.326 15 C -0.023 4.023 16 C -0.172 4.172 17 C -0.148 4.148 18 C 0.021 3.979 19 H 0.048 0.952 20 C -0.560 4.560 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.518 5.518 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.007 4.007 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.648 13.942 -0.713 20.235 hybrid contribution 0.142 -1.641 0.169 1.656 sum 14.790 12.300 -0.545 19.244 Atomic orbital electron populations 1.21100 0.87681 1.05728 1.03778 1.21492 0.97451 0.86250 0.89250 1.67860 1.08197 1.28139 1.14858 1.18976 0.89196 0.92973 0.96866 1.20793 0.94176 0.96361 1.00315 1.20915 0.93683 0.98705 0.98494 1.20880 1.00253 0.92306 1.00989 1.21025 0.92484 0.98611 0.98403 1.18757 0.94864 0.93610 1.04381 1.21923 0.93000 0.97645 0.92796 1.21056 0.94476 0.96040 1.05228 1.17968 0.82830 0.82687 0.82524 1.90790 1.34446 1.78029 1.36844 1.48503 1.35160 1.21507 1.27402 1.21858 0.90296 1.00853 0.89290 1.21943 0.99856 1.00214 0.95146 1.21633 0.98632 0.93992 1.00573 1.18971 0.91937 0.97724 0.89238 0.95221 1.21063 1.14504 1.01571 1.18847 0.92335 1.25046 0.96832 0.96914 0.95186 1.69864 1.26988 1.34545 1.20381 0.86587 0.79935 0.84018 0.77432 1.20676 1.21157 1.19928 1.22386 0.94278 0.80503 1.03539 0.89905 0.90159 0.87781 0.84737 0.85379 0.85547 0.85146 0.83732 0.90973 0.91725 0.92133 0.92168 0.92913 0.93125 0.92582 0.93683 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.83 36.01 0.35 -1.63 16 2 C 0.21 3.42 6.82 -82.15 -0.56 2.86 16 3 N -0.48 -7.52 10.20 -6.93 -0.07 -7.59 16 4 C 0.14 1.96 6.61 -84.78 -0.56 1.40 16 5 C -0.10 -1.07 9.97 -39.48 -0.39 -1.46 16 6 C -0.10 -0.83 9.94 -39.93 -0.40 -1.23 16 7 C -0.13 -1.03 9.96 -39.92 -0.40 -1.43 16 8 C -0.09 -0.83 9.77 -39.46 -0.39 -1.21 16 9 C -0.11 -1.44 5.74 -106.81 -0.61 -2.06 16 10 C -0.03 -0.37 7.34 -38.43 -0.28 -0.65 16 11 C -0.16 -2.68 4.85 -104.83 -0.51 -3.19 16 12 C 0.55 10.99 6.52 -12.37 -0.08 10.91 16 13 O -0.52 -12.33 14.53 5.31 0.08 -12.26 16 14 N -0.59 -11.56 2.97 -173.90 -0.52 -12.08 16 15 C 0.10 1.55 5.61 -3.71 -0.02 1.52 16 16 C -0.13 -2.12 6.08 -26.61 -0.16 -2.29 16 17 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16 18 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.52 -13.77 8.56 -34.44 -0.29 -14.06 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 23 N -0.88 -25.01 11.40 55.43 0.63 -24.37 16 24 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.11 2.63 5.39 -3.70 -0.02 2.61 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.91 5.52 -51.93 -0.29 1.62 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.15 1.64 7.51 -52.48 -0.39 1.24 16 37 H 0.07 0.98 4.81 -51.93 -0.25 0.73 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.12 3.39 5.16 -51.93 -0.27 3.13 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -30.99 360.18 -10.47 -41.45 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.24 Total: 3.34 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -4.76 Total: -9.80 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.04 Total: -44.04 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.99 -10.47 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.891 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds