Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30822 * 119.22871 * 2 1 4 4 C 1.33797 * 121.71986 * 180.23464 * 3 2 1 5 5 C 1.40527 * 120.82010 * 179.72786 * 4 3 2 6 6 C 1.36120 * 119.81730 * 180.02562 * 5 4 3 7 7 C 1.39346 * 121.09214 * 359.95310 * 6 5 4 8 8 C 1.36140 * 120.84099 * 0.04657 * 7 6 5 9 9 C 1.40559 * 119.61676 * 359.97438 * 8 7 6 10 10 C 1.40490 * 121.23639 * 179.97438 * 9 8 7 11 11 C 1.39046 * 117.96348 * 180.02562 * 10 9 8 12 12 C 1.47759 * 120.26664 * 179.97438 * 11 10 9 13 13 O 1.21561 * 120.00326 * 235.39835 * 12 11 10 14 14 N 1.34775 * 119.99773 * 55.39229 * 12 11 10 15 15 C 1.46920 * 120.63238 * 355.99771 * 14 12 11 16 16 C 1.53196 * 108.77751 * 126.43068 * 15 14 12 17 17 C 1.53043 * 109.31122 * 54.63403 * 16 15 14 18 18 C 1.53038 * 109.53929 * 298.63553 * 17 16 15 19 19 H 1.08997 * 109.50141 * 301.38200 * 18 17 16 20 20 C 1.50698 * 109.50000 * 181.31515 * 18 17 16 21 21 H 1.08001 * 119.99855 * 0.06654 * 20 18 17 22 22 C 1.37876 * 120.00299 * 179.78687 * 20 18 17 23 23 N 1.31514 * 120.00050 * 0.28049 * 22 20 18 24 24 Si 1.86796 * 120.00058 * 180.27609 * 22 20 18 25 25 H 1.48500 * 109.47247 * 90.00488 * 24 22 20 26 26 H 1.48505 * 109.47197 * 210.00138 * 24 22 20 27 27 H 1.48495 * 109.47280 * 330.00359 * 24 22 20 28 28 C 1.46938 * 120.60131 * 176.01646 * 14 12 11 29 29 H 1.08996 * 109.47084 * 274.39991 * 1 2 3 30 30 H 1.08996 * 109.47213 * 34.40687 * 1 2 3 31 31 H 1.08999 * 109.46760 * 154.40558 * 1 2 3 32 32 H 1.07998 * 120.08916 * 0.02785 * 5 4 3 33 33 H 1.08003 * 119.45541 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.58150 * 180.02562 * 7 6 5 35 35 H 1.07992 * 120.19619 * 179.97438 * 8 7 6 36 36 H 1.08005 * 121.01861 * 0.05007 * 10 9 8 37 37 H 1.09001 * 109.58802 * 6.64641 * 15 14 12 38 38 H 1.09001 * 109.59167 * 246.21553 * 15 14 12 39 39 H 1.08998 * 109.49804 * 294.68692 * 16 15 14 40 40 H 1.09001 * 109.50135 * 174.58873 * 16 15 14 41 41 H 1.09007 * 109.45961 * 178.61624 * 17 16 15 42 42 H 1.08994 * 109.44699 * 58.65331 * 17 16 15 43 43 H 0.96993 * 120.00572 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.56315 * 113.77013 * 28 14 12 45 45 H 1.08998 * 109.61715 * 353.34001 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1998 -0.0047 5 6 4.1493 2.4368 -0.0103 6 6 5.5101 2.4721 -0.0155 7 6 6.2604 1.2980 -0.0144 8 6 5.6513 0.0804 -0.0090 9 6 4.2477 0.0059 -0.0039 10 6 3.5839 -1.2322 0.0012 11 6 2.1935 -1.2265 0.0055 12 6 1.4435 -2.4997 0.0104 13 8 0.6172 -2.7217 -0.8531 14 7 1.6757 -3.4148 0.9722 15 6 2.7315 -3.1997 1.9710 16 6 2.1241 -3.3451 3.3698 17 6 1.4227 -4.7010 3.4786 18 6 0.2915 -4.7760 2.4506 19 1 -0.4148 -3.9648 2.6269 20 6 -0.4191 -6.0986 2.5803 21 1 -0.0971 -6.8141 3.3225 22 6 -1.4839 -6.3930 1.7553 23 7 -1.8760 -5.5218 0.8515 24 14 -2.3695 -8.0293 1.9213 25 1 -3.4823 -7.8933 2.8952 26 1 -2.9146 -8.4333 0.6003 27 1 -1.4160 -9.0619 2.4002 28 6 0.8775 -4.6465 1.0411 29 1 -0.3633 0.0788 1.0246 30 1 -0.3633 0.8478 -0.5807 31 1 -0.3633 -0.9268 -0.4440 32 1 3.5837 3.3568 -0.0105 33 1 6.0165 3.4260 -0.0203 34 1 7.3390 1.3545 -0.0182 35 1 6.2431 -0.8229 -0.0086 36 1 4.1367 -2.1601 0.0022 37 1 3.1458 -2.1982 1.8549 38 1 3.5190 -3.9411 1.8358 39 1 1.4008 -2.5470 3.5371 40 1 2.9144 -3.2832 4.1179 41 1 1.0107 -4.8173 4.4811 42 1 2.1413 -5.4977 3.2867 43 1 -2.6248 -5.7289 0.2709 44 1 1.5136 -5.5059 0.8295 45 1 0.0686 -4.5997 0.3119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = -4.215195 kcal Electronic energy + Delta-G solvation = -27483.922889 eV Core-core repulsion = 23850.935863 eV Total energy + Delta-G solvation = -3632.987026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22333 -40.78675 -38.64029 -37.91335 -35.52488 -34.57572 -33.41609 -32.97889 -31.73365 -31.00156 -28.90458 -27.14916 -26.73134 -24.92595 -23.77386 -23.45682 -23.01985 -21.81867 -20.28539 -19.27420 -18.54333 -18.13696 -17.70797 -17.13796 -16.63750 -16.49211 -16.03993 -15.66078 -15.41701 -15.30407 -15.16950 -14.95329 -14.55797 -14.40650 -14.22105 -14.10248 -14.04566 -13.71268 -13.54915 -13.15226 -12.89290 -12.76761 -12.68111 -12.40163 -12.33554 -12.26848 -12.24731 -11.97565 -11.67372 -11.44777 -11.20482 -11.00163 -10.89097 -10.53737 -10.45657 -9.72471 -9.47586 -9.21927 -8.10917 -6.27588 -0.75164 -0.38258 0.89459 1.40649 1.42151 1.50167 1.52564 1.85645 2.17618 2.42547 3.01415 3.08646 3.17609 3.34946 3.53765 3.58346 3.85341 3.96767 3.99089 4.11798 4.24335 4.29068 4.34896 4.38196 4.52875 4.54887 4.55708 4.69930 4.70499 4.75801 4.80217 4.81510 4.90360 5.05346 5.06520 5.17074 5.21716 5.24274 5.33744 5.39278 5.45524 5.50504 5.52312 5.60473 5.88442 5.89947 5.98330 6.32023 6.53058 6.79578 6.84664 7.16691 7.42651 8.92669 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003260 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.024894 B = 8586.668536 C = 9187.705913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.188 3.812 3 N -0.494 5.494 4 C 0.118 3.882 5 C -0.121 4.121 6 C -0.076 4.076 7 C -0.115 4.115 8 C -0.088 4.088 9 C -0.125 4.125 10 C -0.009 4.009 11 C -0.190 4.190 12 C 0.554 3.446 13 O -0.576 6.576 14 N -0.597 5.597 15 C 0.098 3.902 16 C -0.127 4.127 17 C -0.104 4.104 18 C 0.039 3.961 19 H -0.014 1.014 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.011 3.989 23 N -0.914 5.914 24 Si 0.957 3.043 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.261 1.261 28 C 0.127 3.873 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.260 0.740 44 H 0.043 0.957 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.541 14.198 1.097 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 N -0.204 5.204 4 C -0.004 4.004 5 C -0.140 4.140 6 C -0.096 4.096 7 C -0.132 4.132 8 C -0.106 4.106 9 C -0.127 4.127 10 C -0.035 4.035 11 C -0.195 4.195 12 C 0.342 3.658 13 O -0.457 6.457 14 N -0.327 5.327 15 C -0.024 4.024 16 C -0.165 4.165 17 C -0.142 4.142 18 C 0.020 3.980 19 H 0.004 0.996 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.553 5.553 24 Si 0.782 3.218 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.186 1.186 28 C 0.005 3.995 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.187 0.813 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.597 14.928 0.533 24.641 hybrid contribution -1.179 -1.769 -0.206 2.136 sum 18.418 13.159 0.327 22.638 Atomic orbital electron populations 1.20943 0.88656 1.04386 1.03686 1.21356 0.97235 0.86830 0.91081 1.67817 1.09733 1.27509 1.15307 1.19495 0.88688 0.94859 0.97329 1.20999 0.95536 0.95508 1.01966 1.21417 0.92605 1.00748 0.94836 1.21408 1.02268 0.91353 0.98218 1.21394 0.90888 1.00738 0.97606 1.18979 0.96492 0.92515 1.04666 1.22186 0.91558 0.99268 0.90445 1.20656 0.95632 0.93796 1.09455 1.18494 0.82200 0.83575 0.81563 1.90749 1.36846 1.79164 1.38961 1.48472 1.35630 1.20251 1.28377 1.22178 0.89502 1.03117 0.87579 1.21911 1.00486 0.97316 0.96769 1.21513 0.97306 0.96649 0.98698 1.18900 0.92830 0.95103 0.91188 0.99590 1.21493 1.14735 1.02579 1.18494 0.91881 1.25875 0.97861 1.00223 0.94923 1.70068 1.27371 1.36507 1.21323 0.85576 0.78889 0.80182 0.77151 1.20259 1.21426 1.18555 1.21796 0.93540 0.82312 1.01859 0.89880 0.88928 0.91095 0.84244 0.81778 0.81617 0.82152 0.81277 0.88678 0.88878 0.93717 0.87760 0.92916 0.91957 0.93116 0.93838 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 9.83 71.24 0.70 -3.47 16 2 C 0.19 6.48 6.82 43.27 0.30 6.78 16 3 N -0.49 -15.69 10.20 -175.85 -1.79 -17.48 16 4 C 0.12 3.09 6.61 40.28 0.27 3.36 16 5 C -0.12 -2.33 9.97 22.34 0.22 -2.11 16 6 C -0.08 -0.91 9.94 22.04 0.22 -0.69 16 7 C -0.11 -1.18 9.96 22.05 0.22 -0.96 16 8 C -0.09 -1.24 9.77 22.35 0.22 -1.02 16 9 C -0.12 -2.81 5.74 -21.28 -0.12 -2.94 16 10 C -0.01 -0.22 7.34 23.01 0.17 -0.05 16 11 C -0.19 -6.45 4.85 -20.00 -0.10 -6.54 16 12 C 0.55 23.32 6.52 86.76 0.57 23.89 16 13 O -0.58 -29.76 14.53 -3.91 -0.06 -29.82 16 14 N -0.60 -23.96 2.97 -822.38 -2.44 -26.41 16 15 C 0.10 2.82 5.61 86.36 0.48 3.31 16 16 C -0.13 -3.80 6.08 30.67 0.19 -3.62 16 17 C -0.10 -3.95 5.11 30.62 0.16 -3.79 16 18 C 0.04 1.95 2.25 -11.46 -0.03 1.92 16 19 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 20 C -0.53 -29.11 8.56 25.60 0.22 -28.89 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 22 C 0.01 0.60 5.31 84.65 0.45 1.05 16 23 N -0.91 -55.25 11.40 21.45 0.24 -55.01 16 24 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.13 6.24 5.39 86.36 0.47 6.71 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.07 2.95 5.52 -2.39 -0.01 2.94 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 34 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.17 3.29 7.51 -2.91 -0.02 3.26 16 37 H 0.10 2.35 4.81 -2.39 -0.01 2.34 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 4.65 5.16 -2.39 -0.01 4.64 16 Total: -1.00 -75.64 360.18 3.57 -72.07 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.00 Total: 17.62 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.59 Total: -7.06 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -3.99 Total: -98.89 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -75.64 3.57 -72.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.851 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds