Wall clock time and date at job start Tue Mar 31 2020 14:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.99762 * 2 1 4 4 C 1.38211 * 119.99314 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00538 * 359.76889 * 4 3 2 6 6 C 1.38217 * 119.99545 * 0.45933 * 5 4 3 7 7 C 1.50698 * 120.00015 * 179.79121 * 6 5 4 8 8 C 1.50700 * 109.47293 * 269.73163 * 7 6 5 9 9 O 1.21283 * 119.99808 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00265 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99868 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 89.99907 * 11 10 8 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99734 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00111 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99915 * 16 14 12 18 18 H 1.48498 * 109.47161 * 209.99603 * 16 14 12 19 19 H 1.48497 * 109.47329 * 329.99749 * 16 14 12 20 20 C 1.46498 * 120.00377 * 179.97438 * 10 8 7 21 21 C 1.50704 * 109.47158 * 270.00187 * 20 10 8 22 22 C 1.38680 * 120.41581 * 269.71824 * 21 20 10 23 23 C 1.38621 * 118.41527 * 179.78385 * 22 21 20 24 24 C 1.38226 * 119.16699 * 0.50984 * 23 22 21 25 25 N 1.31855 * 120.76141 * 359.73116 * 24 23 22 26 26 C 1.31890 * 121.72616 * 359.97438 * 25 24 23 27 27 C 1.38214 * 119.99521 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47400 * 270.02431 * 1 2 3 29 29 H 1.09004 * 109.47276 * 30.02138 * 1 2 3 30 30 H 1.08999 * 109.47486 * 150.02057 * 1 2 3 31 31 H 1.07990 * 120.00451 * 359.97276 * 3 2 1 32 32 H 1.08006 * 119.99695 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.00215 * 180.25526 * 5 4 3 34 34 H 1.08995 * 109.47462 * 149.72434 * 7 6 5 35 35 H 1.09005 * 109.46968 * 29.72869 * 7 6 5 36 36 H 1.09001 * 109.47060 * 210.00357 * 11 10 8 37 37 H 1.09004 * 109.47073 * 329.99846 * 11 10 8 38 38 H 0.97007 * 120.00011 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.46694 * 29.99578 * 20 10 8 40 40 H 1.08995 * 109.47258 * 149.99854 * 20 10 8 41 41 H 1.07991 * 120.78875 * 0.02562 * 22 21 20 42 42 H 1.08005 * 120.41922 * 180.22412 * 23 22 21 43 43 H 1.08000 * 119.62265 * 179.74843 * 24 23 22 44 44 H 1.07999 * 119.61428 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.00519 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0059 6 6 3.5805 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0022 8 6 4.5853 -2.9383 -1.4182 9 8 4.1910 -2.2567 -2.3406 10 7 5.2483 -4.0858 -1.6635 11 6 5.7251 -4.9089 -0.5493 12 6 4.6584 -5.9021 -0.1659 13 1 3.7195 -5.9187 -0.6993 14 6 4.8818 -6.7900 0.8649 15 7 3.9508 -7.6564 1.1997 16 14 6.5062 -6.7614 1.7868 17 1 6.4043 -5.8320 2.9405 18 1 6.8208 -8.1271 2.2778 19 1 7.5848 -6.3025 0.8752 20 6 5.4921 -4.5101 -3.0444 21 6 4.3455 -5.3665 -3.5166 22 6 4.3783 -6.7420 -3.3424 23 6 3.2993 -7.4893 -3.7884 24 6 2.2390 -6.8446 -4.3972 25 7 2.2442 -5.5350 -4.5506 26 6 3.2508 -4.7918 -4.1335 27 6 2.1980 -1.1970 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6583 2.1326 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 5.3516 -0.0001 0.0105 34 1 3.7449 -3.2613 0.5166 35 1 5.2864 -2.3714 0.5160 36 1 6.6265 -5.4421 -0.8512 37 1 5.9500 -4.2695 0.3045 38 1 4.1077 -8.2809 1.9253 39 1 5.5774 -3.6320 -3.6845 40 1 6.4174 -5.0843 -3.0900 41 1 5.2225 -7.2190 -2.8670 42 1 3.2893 -8.5623 -3.6659 43 1 1.3964 -7.4201 -4.7511 44 1 3.2192 -3.7218 -4.2764 45 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608854642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:17 Heat of formation + Delta-G solvation = 19.046638 kcal Electronic energy + Delta-G solvation = -27245.767883 eV Core-core repulsion = 23613.789566 eV Total energy + Delta-G solvation = -3631.978317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00205 -39.40223 -38.45252 -35.35112 -33.36569 -32.77446 -32.08818 -31.69423 -31.10265 -28.21741 -27.83962 -26.68535 -25.42856 -23.06296 -22.58922 -22.04311 -21.63558 -20.52348 -18.35942 -17.19154 -16.63603 -16.42134 -16.28661 -15.67663 -15.45670 -15.37665 -14.96199 -14.49781 -14.22874 -13.87150 -13.60945 -13.33001 -13.00674 -12.96751 -12.83849 -12.67456 -12.49623 -12.44369 -12.21651 -12.14593 -11.77289 -11.64346 -11.45732 -11.12195 -11.03135 -10.87554 -10.71653 -10.66046 -10.34941 -9.74845 -9.35418 -9.14701 -8.98079 -8.78872 -8.56266 -8.46036 -8.29631 -7.85894 -6.26949 -4.28870 1.55142 1.62688 1.66716 1.86463 3.11141 3.18218 3.21637 3.27559 3.72246 4.08288 4.19959 4.42974 4.92368 4.97441 5.00062 5.03055 5.10640 5.18804 5.33557 5.35601 5.42000 5.48506 5.53150 5.59940 5.63752 5.69228 5.74634 5.83587 5.89947 5.93320 5.98409 6.12790 6.16041 6.27353 6.31533 6.36154 6.40805 6.54701 6.67714 6.68024 6.80029 6.83799 6.93127 7.20109 7.23323 7.27798 7.36833 8.02486 8.33295 8.45880 8.78255 8.86491 9.31856 10.85082 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009185 B = 0.004924 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.870192 B = 5685.357644 C = 7296.768807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.047 4.047 7 C -0.103 4.103 8 C 0.525 3.475 9 O -0.557 6.557 10 N -0.590 5.590 11 C 0.206 3.794 12 C -0.537 4.537 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.887 5.887 16 Si 0.867 3.133 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.166 3.834 21 C -0.145 4.145 22 C -0.030 4.030 23 C -0.175 4.175 24 C 0.089 3.911 25 N -0.497 5.497 26 C 0.113 3.887 27 C -0.102 4.102 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.266 0.734 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 8.949 -3.606 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.133 4.133 6 C -0.048 4.048 7 C -0.143 4.143 8 C 0.314 3.686 9 O -0.436 6.436 10 N -0.320 5.320 11 C 0.085 3.915 12 C -0.575 4.575 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.524 5.524 16 Si 0.693 3.307 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.189 1.189 20 C 0.042 3.958 21 C -0.148 4.148 22 C -0.057 4.057 23 C -0.195 4.195 24 C -0.068 4.068 25 N -0.205 5.205 26 C -0.044 4.044 27 C -0.120 4.120 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.170 0.830 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.084 9.541 -4.351 10.487 hybrid contribution 1.517 -0.895 1.304 2.191 sum 1.600 8.646 -3.047 9.306 Atomic orbital electron populations 1.20769 0.91514 1.02631 1.02012 1.19836 0.95842 0.93127 0.99990 1.20906 0.94244 0.97130 1.02464 1.20989 0.94246 0.97593 1.00869 1.20934 0.99483 0.92030 1.00813 1.19440 0.93562 0.93983 0.97810 1.20718 1.02025 0.95784 0.95749 1.20290 0.77123 0.80401 0.90810 1.90620 1.51608 1.55101 1.46304 1.47961 1.55721 1.21741 1.06575 1.19890 0.96038 0.90945 0.84641 1.21348 1.02303 1.16083 1.17797 0.90213 1.24862 0.96258 0.94968 0.96469 1.69893 1.33312 1.20040 1.29202 0.87003 0.84706 0.78014 0.80945 1.19878 1.20973 1.18940 1.20104 0.94670 0.97356 0.83636 1.21165 0.98754 0.94984 0.99907 1.21461 0.98287 0.93190 0.92759 1.22039 0.95415 1.01251 1.00767 1.22616 0.97303 0.90773 0.96105 1.67658 1.26977 1.06919 1.18995 1.22691 0.88473 0.99862 0.93419 1.20929 0.93621 0.97638 0.99860 0.91423 0.91860 0.91504 0.86663 0.86524 0.86567 0.86633 0.88583 0.94885 0.95125 0.92401 0.89752 0.90087 0.84772 0.85364 0.83629 0.82999 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.09 -1.27 5.88 -104.62 -0.62 -1.88 16 3 C -0.13 -1.72 9.70 -39.58 -0.38 -2.10 16 4 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 5 C -0.11 -1.71 9.70 -39.58 -0.38 -2.09 16 6 C -0.05 -0.79 4.37 -104.62 -0.46 -1.25 16 7 C -0.10 -1.80 4.38 -29.04 -0.13 -1.93 16 8 C 0.53 10.16 7.66 -10.99 -0.08 10.07 16 9 O -0.56 -11.72 15.17 5.55 0.08 -11.63 16 10 N -0.59 -11.18 2.44 -176.43 -0.43 -11.61 16 11 C 0.21 4.18 4.08 -5.19 -0.02 4.16 16 12 C -0.54 -13.06 9.31 -34.44 -0.32 -13.38 16 13 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 14 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.89 -24.61 13.96 55.43 0.77 -23.83 16 16 Si 0.87 18.77 27.47 -169.99 -4.67 14.10 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 20 C 0.17 2.81 5.60 -5.19 -0.03 2.78 16 21 C -0.14 -2.62 5.48 -104.48 -0.57 -3.19 16 22 C -0.03 -0.54 9.12 -39.28 -0.36 -0.90 16 23 C -0.17 -2.92 10.11 -39.44 -0.40 -3.32 16 24 C 0.09 1.50 11.18 -17.55 -0.20 1.30 16 25 N -0.50 -9.38 10.36 -13.25 -0.14 -9.52 16 26 C 0.11 2.12 10.86 -17.55 -0.19 1.93 16 27 C -0.10 -1.69 9.36 -39.58 -0.37 -2.06 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.12 2.17 7.95 -51.93 -0.41 1.76 16 35 H 0.10 1.48 7.34 -51.93 -0.38 1.10 16 36 H 0.03 0.66 6.95 -51.93 -0.36 0.29 16 37 H 0.03 0.60 5.87 -51.93 -0.30 0.29 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.08 1.37 7.37 -51.93 -0.38 0.99 16 40 H 0.08 1.20 7.84 -51.93 -0.41 0.79 16 41 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.15 2.87 7.61 -52.49 -0.40 2.47 16 45 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -30.03 380.29 -9.74 -39.77 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.45 Total: 9.89 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -4.64 Total: -12.90 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.21 Total: -44.96 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.03 -9.74 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608854642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.817 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds