Wall clock time and date at job start Tue Mar 31 2020 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.99762 * 2 1 4 4 C 1.38211 * 119.99314 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00538 * 359.76889 * 4 3 2 6 6 C 1.38217 * 119.99545 * 0.45933 * 5 4 3 7 7 C 1.50698 * 120.00015 * 179.79121 * 6 5 4 8 8 C 1.50700 * 109.47293 * 269.73163 * 7 6 5 9 9 O 1.21283 * 119.99808 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00265 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99868 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 89.99907 * 11 10 8 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99734 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00111 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99915 * 16 14 12 18 18 H 1.48498 * 109.47161 * 209.99603 * 16 14 12 19 19 H 1.48497 * 109.47329 * 329.99749 * 16 14 12 20 20 C 1.46498 * 120.00377 * 179.97438 * 10 8 7 21 21 C 1.50704 * 109.47158 * 270.00187 * 20 10 8 22 22 C 1.38680 * 120.41581 * 269.71824 * 21 20 10 23 23 C 1.38621 * 118.41527 * 179.78385 * 22 21 20 24 24 C 1.38226 * 119.16699 * 0.50984 * 23 22 21 25 25 N 1.31855 * 120.76141 * 359.73116 * 24 23 22 26 26 C 1.31890 * 121.72616 * 359.97438 * 25 24 23 27 27 C 1.38214 * 119.99521 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47400 * 270.02431 * 1 2 3 29 29 H 1.09004 * 109.47276 * 30.02138 * 1 2 3 30 30 H 1.08999 * 109.47486 * 150.02057 * 1 2 3 31 31 H 1.07990 * 120.00451 * 359.97276 * 3 2 1 32 32 H 1.08006 * 119.99695 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.00215 * 180.25526 * 5 4 3 34 34 H 1.08995 * 109.47462 * 149.72434 * 7 6 5 35 35 H 1.09005 * 109.46968 * 29.72869 * 7 6 5 36 36 H 1.09001 * 109.47060 * 210.00357 * 11 10 8 37 37 H 1.09004 * 109.47073 * 329.99846 * 11 10 8 38 38 H 0.97007 * 120.00011 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.46694 * 29.99578 * 20 10 8 40 40 H 1.08995 * 109.47258 * 149.99854 * 20 10 8 41 41 H 1.07991 * 120.78875 * 0.02562 * 22 21 20 42 42 H 1.08005 * 120.41922 * 180.22412 * 23 22 21 43 43 H 1.08000 * 119.62265 * 179.74843 * 24 23 22 44 44 H 1.07999 * 119.61428 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.00519 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0059 6 6 3.5805 -1.1970 0.0011 7 6 4.3340 -2.5021 0.0022 8 6 4.5853 -2.9383 -1.4182 9 8 4.1910 -2.2567 -2.3406 10 7 5.2483 -4.0858 -1.6635 11 6 5.7251 -4.9089 -0.5493 12 6 4.6584 -5.9021 -0.1659 13 1 3.7195 -5.9187 -0.6993 14 6 4.8818 -6.7900 0.8649 15 7 3.9508 -7.6564 1.1997 16 14 6.5062 -6.7614 1.7868 17 1 6.4043 -5.8320 2.9405 18 1 6.8208 -8.1271 2.2778 19 1 7.5848 -6.3025 0.8752 20 6 5.4921 -4.5101 -3.0444 21 6 4.3455 -5.3665 -3.5166 22 6 4.3783 -6.7420 -3.3424 23 6 3.2993 -7.4893 -3.7884 24 6 2.2390 -6.8446 -4.3972 25 7 2.2442 -5.5350 -4.5506 26 6 3.2508 -4.7918 -4.1335 27 6 2.1980 -1.1970 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6583 2.1326 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 5.3516 -0.0001 0.0105 34 1 3.7449 -3.2613 0.5166 35 1 5.2864 -2.3714 0.5160 36 1 6.6265 -5.4421 -0.8512 37 1 5.9500 -4.2695 0.3045 38 1 4.1077 -8.2809 1.9253 39 1 5.5774 -3.6320 -3.6845 40 1 6.4174 -5.0843 -3.0900 41 1 5.2225 -7.2190 -2.8670 42 1 3.2893 -8.5623 -3.6659 43 1 1.3964 -7.4201 -4.7511 44 1 3.2192 -3.7218 -4.2764 45 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608854642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:16 Heat of formation + Delta-G solvation = 4.190576 kcal Electronic energy + Delta-G solvation = -27246.412090 eV Core-core repulsion = 23613.789566 eV Total energy + Delta-G solvation = -3632.622524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43100 -40.71289 -39.76183 -36.92458 -34.80125 -34.35888 -33.54610 -32.89098 -32.48059 -29.91456 -29.19943 -27.73456 -26.81509 -24.59377 -24.24265 -23.35786 -22.85514 -21.71487 -19.84781 -19.06153 -18.09426 -17.90131 -17.48017 -17.06105 -16.88864 -16.80275 -16.28840 -15.93056 -15.58603 -15.30949 -14.85198 -14.71422 -14.51628 -14.29791 -14.09802 -14.03486 -13.91135 -13.79909 -13.71323 -13.37953 -13.21376 -12.78596 -12.74145 -12.64031 -12.52801 -12.42046 -11.98690 -11.88097 -11.83125 -11.64714 -10.90602 -10.75496 -10.56520 -10.42077 -9.92939 -9.65055 -9.45840 -9.42219 -8.22714 -6.28557 0.18021 0.42762 0.47923 0.52857 1.42497 1.44814 1.52403 1.73936 2.30815 2.38109 2.88615 3.01653 3.11723 3.57205 3.77251 3.79507 3.91150 3.95551 4.05409 4.09004 4.15497 4.20457 4.25592 4.38834 4.49339 4.50955 4.61067 4.63721 4.68674 4.76447 4.80571 4.81688 4.86655 4.89317 4.90684 4.99292 5.19932 5.27825 5.31905 5.42078 5.49209 5.58535 5.67575 5.70232 5.75908 5.84415 6.17476 6.24287 6.60175 6.78542 7.04196 7.27593 7.38997 8.92834 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009185 B = 0.004924 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.870192 B = 5685.357644 C = 7296.768807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.068 4.068 7 C -0.098 4.098 8 C 0.521 3.479 9 O -0.576 6.576 10 N -0.591 5.591 11 C 0.211 3.789 12 C -0.522 4.522 13 H 0.030 0.970 14 C 0.023 3.977 15 N -0.941 5.941 16 Si 0.932 3.068 17 H -0.269 1.269 18 H -0.292 1.292 19 H -0.234 1.234 20 C 0.163 3.837 21 C -0.150 4.150 22 C -0.043 4.043 23 C -0.178 4.178 24 C 0.084 3.916 25 N -0.517 5.517 26 C 0.097 3.903 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.178 0.822 44 H 0.144 0.856 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 10.621 -3.351 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.069 4.069 7 C -0.137 4.137 8 C 0.310 3.690 9 O -0.457 6.457 10 N -0.320 5.320 11 C 0.089 3.911 12 C -0.560 4.560 13 H 0.048 0.952 14 C -0.176 4.176 15 N -0.581 5.581 16 Si 0.755 3.245 17 H -0.194 1.194 18 H -0.218 1.218 19 H -0.157 1.157 20 C 0.040 3.960 21 C -0.153 4.153 22 C -0.070 4.070 23 C -0.197 4.197 24 C -0.073 4.073 25 N -0.226 5.226 26 C -0.060 4.060 27 C -0.151 4.151 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.195 0.805 44 H 0.161 0.839 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.837 11.234 -4.121 12.106 hybrid contribution 0.840 -1.400 1.161 2.003 sum 2.677 9.834 -2.960 10.613 Atomic orbital electron populations 1.20813 0.89817 1.03142 1.03024 1.20178 0.97313 0.92871 0.99281 1.21321 0.94599 0.97785 1.01044 1.21415 0.94566 0.98300 0.99106 1.21181 1.00433 0.91904 1.00823 1.19489 0.93666 0.94293 0.99437 1.20658 1.02789 0.95828 0.94433 1.20650 0.76588 0.80344 0.91399 1.90598 1.52244 1.55768 1.47092 1.47986 1.55553 1.21382 1.07109 1.19794 0.95087 0.90488 0.85704 1.21371 1.01353 1.16595 1.16715 0.95160 1.25669 0.99887 0.94502 0.97499 1.70062 1.36006 1.21621 1.30401 0.85954 0.80860 0.77631 0.80013 1.19380 1.21825 1.15661 1.20302 0.95254 0.97817 0.82657 1.21266 0.98913 0.95348 0.99775 1.21639 0.98945 0.93319 0.93087 1.22371 0.94925 1.02519 0.99897 1.23153 0.98296 0.90286 0.95578 1.67644 1.27246 1.08031 1.19694 1.22662 0.89164 0.99686 0.94444 1.20977 0.94063 0.97932 1.02099 0.90100 0.89746 0.92574 0.83485 0.83240 0.85024 0.89018 0.86449 0.92945 0.93471 0.92657 0.89188 0.87526 0.84464 0.83043 0.80475 0.83857 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 10.01 71.24 0.71 -1.77 16 2 C -0.10 -2.72 5.88 -19.87 -0.12 -2.84 16 3 C -0.13 -3.13 9.70 22.27 0.22 -2.91 16 4 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 5 C -0.13 -3.56 9.70 22.27 0.22 -3.35 16 6 C -0.07 -2.30 4.37 -19.87 -0.09 -2.39 16 7 C -0.10 -3.45 4.38 29.10 0.13 -3.32 16 8 C 0.52 20.31 7.66 87.66 0.67 20.98 16 9 O -0.58 -24.65 15.17 -3.04 -0.05 -24.69 16 10 N -0.59 -22.13 2.44 -830.49 -2.03 -24.15 16 11 C 0.21 8.26 4.08 85.63 0.35 8.61 16 12 C -0.52 -25.68 9.31 25.60 0.24 -25.44 16 13 H 0.03 1.77 7.84 -2.91 -0.02 1.75 16 14 C 0.02 1.18 5.47 84.65 0.46 1.65 16 15 N -0.94 -53.67 13.96 21.45 0.30 -53.37 16 16 Si 0.93 37.74 27.47 68.60 1.88 39.62 16 17 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.23 -8.25 6.54 99.48 0.65 -7.59 16 20 C 0.16 5.41 5.60 85.63 0.48 5.89 16 21 C -0.15 -5.48 5.48 -19.77 -0.11 -5.59 16 22 C -0.04 -1.55 9.12 22.47 0.20 -1.34 16 23 C -0.18 -5.89 10.11 22.36 0.23 -5.67 16 24 C 0.08 2.80 11.18 84.69 0.95 3.75 16 25 N -0.52 -19.90 10.36 -195.84 -2.03 -21.93 16 26 C 0.10 3.77 10.86 84.67 0.92 4.69 16 27 C -0.13 -4.53 9.36 22.27 0.21 -4.32 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.51 8.09 -2.38 -0.02 1.49 16 30 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 31 H 0.15 2.56 8.06 -2.92 -0.02 2.54 16 32 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.09 3.64 7.95 -2.39 -0.02 3.62 16 35 H 0.12 3.51 7.34 -2.38 -0.02 3.49 16 36 H 0.05 1.90 6.95 -2.39 -0.02 1.88 16 37 H 0.05 1.73 5.87 -2.38 -0.01 1.71 16 38 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 39 H 0.09 2.88 7.37 -2.39 -0.02 2.87 16 40 H 0.11 2.95 7.84 -2.39 -0.02 2.94 16 41 H 0.14 4.74 8.06 -2.92 -0.02 4.71 16 42 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.18 4.61 8.06 -2.91 -0.02 4.59 16 44 H 0.14 5.69 7.61 -2.91 -0.02 5.67 16 45 H 0.10 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.17 380.29 4.90 -62.28 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.92 Total: 38.19 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 5.89 Total: -15.94 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -3.76 Total: -99.46 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.88 Total: 39.62 kcal Total: -67.17 4.90 -62.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608854642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.466 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds