Wall clock time and date at job start Tue Mar 31 2020 14:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46700 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.46916 * 120.00222 * 12 10 8 15 15 H 1.48504 * 109.46853 * 240.00186 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 C 1.53002 * 109.46688 * 179.97438 * 18 16 6 20 20 C 1.50704 * 109.47004 * 179.97438 * 19 18 16 21 21 C 1.38672 * 120.42080 * 269.72232 * 20 19 18 22 22 C 1.38625 * 118.42115 * 179.78382 * 21 20 19 23 23 C 1.38220 * 119.16141 * 0.51126 * 22 21 20 24 24 N 1.31852 * 120.76536 * 359.72493 * 23 22 21 25 25 C 1.31888 * 121.72661 * 0.02562 * 24 23 22 26 26 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 27 27 C 1.38114 * 119.93006 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 29 29 H 1.09004 * 109.47265 * 30.23327 * 1 2 3 30 30 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 31 31 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 32 32 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 33 33 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 34 34 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 35 35 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.47228 * 299.98631 * 18 16 6 37 37 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 38 38 H 1.08993 * 109.47113 * 299.99242 * 19 18 16 39 39 H 1.08999 * 109.47271 * 59.99754 * 19 18 16 40 40 H 1.08002 * 120.79002 * 0.02562 * 21 20 19 41 41 H 1.08006 * 120.41959 * 180.21367 * 22 21 20 42 42 H 1.08004 * 119.62148 * 179.74514 * 23 22 21 43 43 H 1.07994 * 119.62284 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.02798 * 180.02562 * 26 5 4 45 45 H 1.08000 * 119.96158 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 7.0682 3.1197 -3.8962 14 1 9.1098 2.0519 -4.6536 15 1 7.0106 1.5893 -5.7761 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 6 8.3601 1.0716 2.3837 20 6 9.8634 1.1716 2.3455 21 6 10.6487 0.0994 2.7412 22 6 12.0272 0.2349 2.6850 23 6 12.5692 1.4296 2.2497 24 7 11.7916 2.4302 1.8857 25 6 10.4766 2.3351 1.9214 26 6 3.5780 -1.2019 0.0048 27 6 2.1968 -1.1984 0.0053 28 1 -0.3633 0.0042 1.0276 29 1 -0.3634 0.8879 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6553 2.1327 0.0007 32 1 4.1164 2.1380 -0.0101 33 1 7.3583 -0.9083 -0.8570 34 1 5.8170 -1.2467 -1.6806 35 1 8.2405 -0.9034 -4.4324 36 1 8.2752 -0.4415 0.8524 37 1 8.1480 1.2271 0.2458 38 1 7.9349 2.0573 2.5722 39 1 8.0619 0.3890 3.1794 40 1 10.1971 -0.8209 3.0813 41 1 12.6695 -0.5809 2.9821 42 1 13.6423 1.5447 2.2069 43 1 9.8721 3.1759 1.6151 44 1 4.1163 -2.1382 0.0094 45 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726942056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:42 Heat of formation + Delta-G solvation = 11.999839 kcal Electronic energy + Delta-G solvation = -26473.704244 eV Core-core repulsion = 22841.420355 eV Total energy + Delta-G solvation = -3632.283889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21372 -39.80974 -38.22593 -35.29395 -34.33303 -32.86425 -32.00014 -31.49032 -30.56382 -29.72220 -27.52661 -26.23515 -24.56742 -23.49014 -23.17428 -22.13981 -21.80257 -20.74930 -18.70053 -17.12067 -16.83882 -16.69385 -16.34326 -16.03349 -15.19809 -15.04221 -14.86405 -14.46624 -14.38774 -14.10128 -13.69002 -13.55378 -13.25308 -13.06366 -12.99624 -12.86711 -12.65620 -12.34279 -12.07832 -11.93874 -11.70198 -11.42772 -11.41538 -11.26866 -11.02289 -10.87702 -10.73282 -10.67912 -10.24145 -9.85197 -9.73140 -9.38627 -9.26797 -8.83981 -8.62585 -8.52117 -8.46345 -7.62234 -6.24390 -4.31717 1.16978 1.34326 1.70306 1.82283 3.19409 3.22828 3.28602 3.32913 3.71335 3.92583 4.14571 4.30218 4.51088 4.85818 4.86517 5.05329 5.09124 5.10146 5.14023 5.15953 5.35047 5.37831 5.41518 5.51828 5.56286 5.70048 5.73620 5.79756 5.80802 5.89594 6.00214 6.05321 6.12478 6.15040 6.15690 6.41478 6.42073 6.49719 6.61926 6.77284 6.81310 6.92098 6.94099 7.11000 7.23441 7.61404 7.71735 7.96403 8.03682 8.14952 8.70916 8.89795 9.36296 10.82617 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.003979 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.501363 B = 7035.746912 C = 9033.957416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.113 4.113 4 C -0.103 4.103 5 C 0.172 3.828 6 N -0.562 5.562 7 C 0.239 3.761 8 C -0.537 4.537 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.522 3.478 17 O -0.562 6.562 18 C -0.127 4.127 19 C -0.061 4.061 20 C -0.123 4.123 21 C -0.074 4.074 22 C -0.172 4.172 23 C 0.086 3.914 24 N -0.485 5.485 25 C 0.103 3.897 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.121 0.879 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -0.343 9.728 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.131 4.131 4 C -0.122 4.122 5 C 0.081 3.919 6 N -0.289 5.289 7 C 0.121 3.879 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.312 3.688 17 O -0.441 6.441 18 C -0.167 4.167 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.192 4.192 23 C -0.071 4.071 24 N -0.193 5.193 25 C -0.054 4.054 26 C -0.141 4.141 27 C -0.132 4.132 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.139 0.861 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.174 0.486 9.799 9.881 hybrid contribution 0.028 -0.237 -0.802 0.837 sum -1.146 0.250 8.996 9.072 Atomic orbital electron populations 1.20712 0.91636 1.02319 1.01765 1.19792 0.95677 0.93243 1.01864 1.20805 0.93593 0.97295 1.01452 1.21205 0.93999 0.97664 0.99375 1.17561 0.83626 0.92813 0.97924 1.45979 1.03276 1.62303 1.17334 1.19576 0.91794 0.95569 0.81011 1.21448 1.36945 0.95218 1.03942 0.91956 1.24916 0.95125 0.95924 0.97658 1.69924 1.37802 1.20487 1.24612 0.86472 0.78111 0.82388 0.80777 1.19554 1.20708 1.20777 1.20595 0.90123 0.76065 0.82049 1.90632 1.70829 1.50560 1.32114 1.21598 0.91973 1.04405 0.98686 1.20318 0.88703 1.03368 0.97552 1.20989 0.97364 0.94933 0.99231 1.21531 0.93570 0.98392 0.96465 1.22107 0.95791 0.99349 1.01946 1.22703 0.99950 0.89178 0.95241 1.67675 1.06004 1.31514 1.14096 1.22732 0.90567 0.96974 0.95104 1.21181 0.94179 0.97471 1.01260 1.20764 0.93487 0.97276 1.01647 0.91692 0.91901 0.91903 0.86367 0.86296 0.93959 0.94361 0.92491 0.88954 0.87360 0.90036 0.90354 0.84879 0.85016 0.83131 0.82731 0.86113 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.11 -1.56 5.88 -104.59 -0.62 -2.18 16 3 C -0.11 -1.81 9.69 -39.61 -0.38 -2.19 16 4 C -0.10 -1.96 9.55 -39.39 -0.38 -2.33 16 5 C 0.17 3.47 4.75 -83.69 -0.40 3.08 16 6 N -0.56 -11.83 2.51 -114.74 -0.29 -12.12 16 7 C 0.24 5.57 4.88 -5.19 -0.03 5.54 16 8 C -0.54 -13.69 9.16 -34.44 -0.32 -14.01 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 12 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.52 10.44 7.53 -10.99 -0.08 10.36 16 17 O -0.56 -12.14 15.74 5.55 0.09 -12.05 16 18 C -0.13 -2.16 4.35 -27.88 -0.12 -2.28 16 19 C -0.06 -0.88 4.66 -27.88 -0.13 -1.01 16 20 C -0.12 -1.68 5.15 -104.48 -0.54 -2.21 16 21 C -0.07 -0.89 9.86 -39.28 -0.39 -1.28 16 22 C -0.17 -1.91 10.11 -39.45 -0.40 -2.31 16 23 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 24 N -0.48 -7.09 10.36 -13.25 -0.14 -7.23 16 25 C 0.10 1.46 10.86 -17.55 -0.19 1.27 16 26 C -0.12 -2.19 9.69 -39.39 -0.38 -2.57 16 27 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.04 0.99 6.47 -51.93 -0.34 0.66 16 34 H 0.04 0.95 7.86 -51.93 -0.41 0.55 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.09 1.53 7.26 -51.93 -0.38 1.16 16 37 H 0.11 1.98 7.91 -51.93 -0.41 1.57 16 38 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 39 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -30.38 385.71 -10.03 -40.41 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.56 Total: 5.74 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -4.66 Total: -12.56 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.31 Total: -42.84 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.38 -10.03 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726942056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.409 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds