Wall clock time and date at job start Tue Mar 31 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46700 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.46916 * 120.00222 * 12 10 8 15 15 H 1.48504 * 109.46853 * 240.00186 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 C 1.53002 * 109.46688 * 179.97438 * 18 16 6 20 20 C 1.50704 * 109.47004 * 179.97438 * 19 18 16 21 21 C 1.38672 * 120.42080 * 269.72232 * 20 19 18 22 22 C 1.38625 * 118.42115 * 179.78382 * 21 20 19 23 23 C 1.38220 * 119.16141 * 0.51126 * 22 21 20 24 24 N 1.31852 * 120.76536 * 359.72493 * 23 22 21 25 25 C 1.31888 * 121.72661 * 0.02562 * 24 23 22 26 26 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 27 27 C 1.38114 * 119.93006 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 29 29 H 1.09004 * 109.47265 * 30.23327 * 1 2 3 30 30 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 31 31 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 32 32 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 33 33 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 34 34 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 35 35 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.47228 * 299.98631 * 18 16 6 37 37 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 38 38 H 1.08993 * 109.47113 * 299.99242 * 19 18 16 39 39 H 1.08999 * 109.47271 * 59.99754 * 19 18 16 40 40 H 1.08002 * 120.79002 * 0.02562 * 21 20 19 41 41 H 1.08006 * 120.41959 * 180.21367 * 22 21 20 42 42 H 1.08004 * 119.62148 * 179.74514 * 23 22 21 43 43 H 1.07994 * 119.62284 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.02798 * 180.02562 * 26 5 4 45 45 H 1.08000 * 119.96158 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 7.0682 3.1197 -3.8962 14 1 9.1098 2.0519 -4.6536 15 1 7.0106 1.5893 -5.7761 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 6 8.3601 1.0716 2.3837 20 6 9.8634 1.1716 2.3455 21 6 10.6487 0.0994 2.7412 22 6 12.0272 0.2349 2.6850 23 6 12.5692 1.4296 2.2497 24 7 11.7916 2.4302 1.8857 25 6 10.4766 2.3351 1.9214 26 6 3.5780 -1.2019 0.0048 27 6 2.1968 -1.1984 0.0053 28 1 -0.3633 0.0042 1.0276 29 1 -0.3634 0.8879 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6553 2.1327 0.0007 32 1 4.1164 2.1380 -0.0101 33 1 7.3583 -0.9083 -0.8570 34 1 5.8170 -1.2467 -1.6806 35 1 8.2405 -0.9034 -4.4324 36 1 8.2752 -0.4415 0.8524 37 1 8.1480 1.2271 0.2458 38 1 7.9349 2.0573 2.5722 39 1 8.0619 0.3890 3.1794 40 1 10.1971 -0.8209 3.0813 41 1 12.6695 -0.5809 2.9821 42 1 13.6423 1.5447 2.2069 43 1 9.8721 3.1759 1.6151 44 1 4.1163 -2.1382 0.0094 45 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726942056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:41 Heat of formation + Delta-G solvation = -2.174458 kcal Electronic energy + Delta-G solvation = -26474.318888 eV Core-core repulsion = 22841.420355 eV Total energy + Delta-G solvation = -3632.898533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54781 -40.99445 -39.60936 -36.91337 -35.56689 -34.72127 -33.06509 -32.75363 -31.88413 -30.89593 -29.34113 -27.48710 -25.82400 -24.95936 -24.46970 -23.54232 -22.95943 -21.98290 -20.20923 -18.74191 -18.42144 -17.93340 -17.66708 -17.39897 -16.68434 -16.42051 -16.27125 -15.84813 -15.71950 -15.40624 -14.80064 -14.58480 -14.52319 -14.40751 -14.33884 -14.02268 -13.97701 -13.88636 -13.59957 -13.17189 -13.04037 -12.96804 -12.78978 -12.62183 -12.49445 -12.46127 -12.11412 -12.03845 -12.00884 -11.71663 -10.94849 -10.69090 -10.61860 -10.37167 -10.03044 -9.86388 -9.85376 -9.12297 -8.25524 -6.39528 0.18339 0.35403 0.37745 0.48542 1.35874 1.39262 1.48905 1.64593 2.18597 2.38340 2.81165 2.89289 3.05380 3.50413 3.69959 3.89790 3.95042 4.05473 4.07374 4.08817 4.09520 4.12000 4.23420 4.33127 4.48595 4.51973 4.56754 4.65301 4.67197 4.83900 4.88709 4.91324 4.93843 4.95872 5.09353 5.14543 5.15917 5.20706 5.22836 5.40541 5.40981 5.55498 5.67003 5.67937 5.80297 5.82374 5.98985 6.16568 6.45701 6.72429 7.04702 7.23014 7.34621 8.80268 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.003979 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.501363 B = 7035.746912 C = 9033.957416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.127 4.127 5 C 0.130 3.870 6 N -0.563 5.563 7 C 0.257 3.743 8 C -0.542 4.542 9 H 0.051 0.949 10 C 0.026 3.974 11 N -0.918 5.918 12 Si 0.952 3.048 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.277 1.277 16 C 0.517 3.483 17 O -0.580 6.580 18 C -0.117 4.117 19 C -0.047 4.047 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.165 4.165 23 C 0.078 3.922 24 N -0.512 5.512 25 C 0.084 3.916 26 C -0.137 4.137 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.180 0.820 43 H 0.155 0.845 44 H 0.121 0.879 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 -0.833 10.079 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.146 4.146 5 C 0.039 3.961 6 N -0.290 5.290 7 C 0.137 3.863 8 C -0.581 4.581 9 H 0.069 0.931 10 C -0.175 4.175 11 N -0.557 5.557 12 Si 0.777 3.223 13 H -0.195 1.195 14 H -0.202 1.202 15 H -0.203 1.203 16 C 0.308 3.692 17 O -0.461 6.461 18 C -0.157 4.157 19 C -0.085 4.085 20 C -0.137 4.137 21 C -0.105 4.105 22 C -0.184 4.184 23 C -0.079 4.079 24 N -0.221 5.221 25 C -0.072 4.072 26 C -0.157 4.157 27 C -0.129 4.129 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.121 0.879 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.170 0.830 41 H 0.185 0.815 42 H 0.197 0.803 43 H 0.172 0.828 44 H 0.139 0.861 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.952 0.003 10.155 10.341 hybrid contribution 0.200 -0.124 -0.873 0.905 sum -1.752 -0.121 9.282 9.446 Atomic orbital electron populations 1.20796 0.88197 1.03882 1.03264 1.20316 0.98075 0.92290 0.99221 1.21155 0.92426 0.99299 1.00440 1.21265 0.95566 0.96670 1.01137 1.17935 0.83255 0.94195 1.00700 1.45910 1.04061 1.62303 1.16760 1.19180 0.91341 0.94356 0.81421 1.21591 1.36660 0.95229 1.04570 0.93107 1.25579 0.94971 0.97980 0.98983 1.70001 1.38510 1.21943 1.25212 0.85596 0.78093 0.79701 0.78914 1.19546 1.20154 1.20308 1.21067 0.91174 0.75428 0.81516 1.90599 1.71512 1.51397 1.32563 1.21539 0.89968 1.04286 0.99884 1.20150 0.89536 1.02924 0.95892 1.20898 0.96668 0.95612 1.00496 1.21866 0.94265 0.98535 0.95842 1.22486 0.95669 0.99849 1.00408 1.23288 1.01198 0.89069 0.94319 1.67678 1.06193 1.32981 1.15266 1.22823 0.90920 0.97505 0.95945 1.21359 0.95646 0.96725 1.01968 1.21187 0.92461 0.99195 1.00053 0.90025 0.90577 0.90218 0.83697 0.87938 0.94402 0.96385 0.92242 0.88578 0.88935 0.90603 0.89843 0.82965 0.81509 0.80340 0.82773 0.86133 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.01 71.24 0.71 -1.16 16 2 C -0.10 -2.69 5.88 -19.85 -0.12 -2.81 16 3 C -0.11 -3.57 9.69 22.25 0.22 -3.35 16 4 C -0.13 -4.97 9.55 22.39 0.21 -4.75 16 5 C 0.13 5.43 4.75 38.16 0.18 5.61 16 6 N -0.56 -24.88 2.51 -635.30 -1.59 -26.47 16 7 C 0.26 12.49 4.88 85.63 0.42 12.90 16 8 C -0.54 -28.54 9.16 25.60 0.23 -28.31 16 9 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 10 C 0.03 1.35 5.46 84.65 0.46 1.81 16 11 N -0.92 -50.63 13.29 21.45 0.28 -50.34 16 12 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 C 0.52 21.64 7.53 87.66 0.66 22.30 16 17 O -0.58 -25.97 15.74 -3.05 -0.05 -26.02 16 18 C -0.12 -4.16 4.35 29.85 0.13 -4.03 16 19 C -0.05 -1.37 4.66 29.85 0.14 -1.23 16 20 C -0.13 -3.68 5.15 -19.77 -0.10 -3.78 16 21 C -0.08 -1.82 9.86 22.47 0.22 -1.59 16 22 C -0.16 -3.27 10.11 22.36 0.23 -3.04 16 23 C 0.08 1.77 11.18 84.69 0.95 2.72 16 24 N -0.51 -14.89 10.36 -195.85 -2.03 -16.92 16 25 C 0.08 2.45 10.86 84.67 0.92 3.37 16 26 C -0.14 -5.02 9.69 22.39 0.22 -4.80 16 27 C -0.11 -3.23 9.69 22.25 0.22 -3.01 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.10 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 34 H 0.02 0.94 7.86 -2.39 -0.02 0.93 16 35 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.10 3.30 7.26 -2.38 -0.02 3.29 16 37 H 0.09 3.58 7.91 -2.39 -0.02 3.57 16 38 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 39 H 0.08 2.36 8.05 -2.39 -0.02 2.34 16 40 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 43 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -67.01 385.71 5.51 -61.50 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.97 Total: 26.94 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 5.90 Total: -13.17 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -3.34 Total: -93.73 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -67.01 5.51 -61.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726942056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.327 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds