Wall clock time and date at job start Tue Mar 31 2020 13:36:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86802 * 120.00208 * 2 1
4 4 H 1.48497 * 109.46938 * 269.99931 * 3 2 1
5 5 H 1.48499 * 109.46985 * 29.99280 * 3 2 1
6 6 H 1.48493 * 109.47356 * 149.99847 * 3 2 1
7 7 C 1.37882 * 119.99993 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99674 * 180.02562 * 7 2 1
9 9 C 1.50695 * 119.99873 * 0.02562 * 7 2 1
10 10 C 1.53002 * 109.46982 * 179.97438 * 9 7 2
11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 7
12 12 N 1.46497 * 109.47227 * 180.02562 * 11 10 9
13 13 C 1.34781 * 120.00104 * 180.02562 * 12 11 10
14 14 O 1.21579 * 119.99842 * 0.02562 * 13 12 11
15 15 N 1.34774 * 119.99593 * 180.02562 * 13 12 11
16 16 C 1.46504 * 119.99670 * 180.02562 * 15 13 12
17 17 C 1.52995 * 109.47329 * 179.97438 * 16 15 13
18 18 C 1.53004 * 109.47487 * 180.02562 * 17 16 15
19 19 O 1.42893 * 109.47267 * 180.02562 * 18 17 16
20 20 C 1.35956 * 117.00026 * 179.97438 * 19 18 17
21 21 C 1.38657 * 120.06128 * 359.97438 * 20 19 18
22 22 C 1.38184 * 119.96964 * 180.02562 * 21 20 19
23 23 C 1.38265 * 120.09281 * 359.97438 * 22 21 20
24 24 C 1.38248 * 120.12705 * 0.02562 * 23 22 21
25 25 C 1.38332 * 120.03366 * 359.97438 * 24 23 22
26 26 F 1.35103 * 120.05240 * 180.02562 * 25 24 23
27 27 H 0.96998 * 119.99848 * 0.02562 * 1 2 3
28 28 H 1.09003 * 109.46998 * 59.99813 * 9 7 2
29 29 H 1.08994 * 109.47349 * 300.00159 * 9 7 2
30 30 H 1.08995 * 109.46725 * 60.00808 * 10 9 7
31 31 H 1.08994 * 109.47555 * 300.00457 * 10 9 7
32 32 H 1.09003 * 109.46895 * 60.00258 * 11 10 9
33 33 H 1.09002 * 109.47233 * 300.00372 * 11 10 9
34 34 H 0.97000 * 119.99738 * 0.02562 * 12 11 10
35 35 H 0.96992 * 120.00602 * 359.97438 * 15 13 12
36 36 H 1.09004 * 109.47195 * 59.99954 * 16 15 13
37 37 H 1.09001 * 109.46985 * 299.99979 * 16 15 13
38 38 H 1.09007 * 109.47098 * 60.00138 * 17 16 15
39 39 H 1.09001 * 109.47491 * 300.00185 * 17 16 15
40 40 H 1.08994 * 109.46599 * 59.99869 * 18 17 16
41 41 H 1.09001 * 109.46881 * 300.00527 * 18 17 16
42 42 H 1.08004 * 120.01774 * 0.03769 * 21 20 19
43 43 H 1.08000 * 119.95526 * 180.27319 * 22 21 20
44 44 H 1.08001 * 119.93128 * 179.97438 * 23 22 21
45 45 H 1.07998 * 119.98480 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4803 -4.9871 0.0012
12 7 2.4322 -6.1006 0.0018
13 6 1.9829 -7.3713 0.0019
14 8 0.7876 -7.5935 0.0010
15 7 2.8588 -8.3957 0.0030
16 6 2.3704 -9.7769 0.0025
17 6 3.5604 -10.7386 0.0034
18 6 3.0504 -12.1812 0.0022
19 8 4.1618 -13.0793 0.0036
20 6 3.8805 -14.4094 0.0034
21 6 2.5627 -14.8406 0.0024
22 6 2.2789 -16.1930 0.0028
23 6 3.3073 -17.1172 0.0035
24 6 4.6227 -16.6916 0.0044
25 6 4.9127 -15.3390 0.0041
26 9 6.1980 -14.9227 0.0045
27 1 -0.4850 0.8400 -0.0004
28 1 0.6247 -2.5570 -0.8897
29 1 0.6240 -2.5567 0.8902
30 1 2.8718 -3.6043 0.8906
31 1 2.8720 -3.6043 -0.8893
32 1 0.8533 -5.0451 -0.8886
33 1 0.8538 -5.0446 0.8914
34 1 3.3859 -5.9234 0.0021
35 1 3.8124 -8.2185 0.0033
36 1 1.7659 -9.9483 -0.8881
37 1 1.7639 -9.9481 0.8919
38 1 4.1653 -10.5674 0.8939
39 1 4.1666 -10.5673 -0.8861
40 1 2.4458 -12.3520 -0.8884
41 1 2.4439 -12.3528 0.8915
42 1 1.7583 -14.1199 0.0013
43 1 1.2524 -16.5287 -0.0024
44 1 3.0826 -18.1735 0.0041
45 1 5.4242 -17.4154 0.0046
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000728950041.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:10
Heat of formation + Delta-G solvation = -132.232072 kcal
Electronic energy + Delta-G solvation = -24952.234514 eV
Core-core repulsion = 20882.927035 eV
Total energy + Delta-G solvation = -4069.307479 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.164 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-49.83792 -41.14098 -40.93077 -38.59562 -37.25626 -36.35538 -35.18395 -33.54132
-32.53362 -31.66776 -30.63857 -28.64617 -26.85750 -24.90231 -23.90896 -23.36133
-22.47610 -22.28266 -21.78476 -19.54161 -19.14715 -18.51801 -18.14891 -17.61070
-17.60491 -17.21294 -16.94166 -16.48871 -16.47258 -15.97138 -15.80408 -15.50539
-15.32654 -15.23372 -14.95013 -14.79235 -14.25255 -13.83603 -13.72002 -13.63919
-13.33737 -13.16484 -12.80654 -12.75423 -12.58587 -12.53606 -12.49841 -12.35677
-11.99003 -11.70148 -11.66001 -11.65228 -11.31387 -11.14430 -10.54240 -10.40709
-9.95169 -9.77720 -9.23793 -8.18495 -6.29909 0.12041 0.26021 1.42491
1.43773 1.54251 1.56722 2.10602 2.13206 2.42940 2.60300 3.15438
3.21986 3.33688 3.72798 3.85059 3.85164 3.92669 4.06888 4.18495
4.21484 4.24770 4.32245 4.38403 4.38573 4.54739 4.57702 4.61755
4.96058 4.97241 4.98634 5.00765 5.07317 5.09552 5.18482 5.25876
5.43534 5.44206 5.48319 5.55486 5.70116 5.72656 5.85586 6.00145
6.23912 6.26679 6.87457 7.10131 7.39716 7.56688 8.93631
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.043873 B = 0.001311 C = 0.001275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 638.046546 B =21352.197348 C =21948.590399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.002 4.002
3 Si 0.967 3.033
4 H -0.273 1.273
5 H -0.285 1.285
6 H -0.260 1.260
7 C -0.542 4.542
8 H 0.066 0.934
9 C 0.023 3.977
10 C -0.101 4.101
11 C 0.149 3.851
12 N -0.730 5.730
13 C 0.697 3.303
14 O -0.640 6.640
15 N -0.732 5.732
16 C 0.145 3.855
17 C -0.118 4.118
18 C 0.059 3.941
19 O -0.329 6.329
20 C 0.080 3.920
21 C -0.188 4.188
22 C -0.087 4.087
23 C -0.128 4.128
24 C -0.119 4.119
25 C 0.030 3.970
26 F -0.151 7.151
27 H 0.263 0.737
28 H -0.007 1.007
29 H -0.007 1.007
30 H 0.068 0.932
31 H 0.068 0.932
32 H 0.047 0.953
33 H 0.047 0.953
34 H 0.412 0.588
35 H 0.414 0.586
36 H 0.064 0.936
37 H 0.064 0.936
38 H 0.087 0.913
39 H 0.087 0.913
40 H 0.081 0.919
41 H 0.080 0.920
42 H 0.155 0.845
43 H 0.161 0.839
44 H 0.164 0.836
45 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.090 -37.293 0.006 38.634
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.200 4.200
3 Si 0.791 3.209
4 H -0.199 1.199
5 H -0.210 1.210
6 H -0.184 1.184
7 C -0.580 4.580
8 H 0.085 0.915
9 C -0.015 4.015
10 C -0.139 4.139
11 C 0.025 3.975
12 N -0.386 5.386
13 C 0.397 3.603
14 O -0.522 6.522
15 N -0.390 5.390
16 C 0.020 3.980
17 C -0.155 4.155
18 C -0.016 4.016
19 O -0.243 6.243
20 C 0.034 3.966
21 C -0.207 4.207
22 C -0.105 4.105
23 C -0.146 4.146
24 C -0.137 4.137
25 C 0.010 3.990
26 F -0.130 7.130
27 H 0.072 0.928
28 H 0.011 0.989
29 H 0.011 0.989
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.065 0.935
33 H 0.065 0.935
34 H 0.249 0.751
35 H 0.250 0.750
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.105 0.895
39 H 0.105 0.895
40 H 0.099 0.901
41 H 0.099 0.901
42 H 0.172 0.828
43 H 0.178 0.822
44 H 0.181 0.819
45 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 9.103 -37.260 0.010 38.356
hybrid contribution 0.888 1.462 -0.012 1.711
sum 9.991 -35.798 -0.001 37.166
Atomic orbital electron populations
1.70111 1.07939 1.27763 1.51692 1.26007 0.95718 1.03489 0.94764
0.85425 0.78695 0.78346 0.78436 1.19850 1.21049 1.18448 1.21689
0.93763 0.92037 1.50478 0.91538 1.18949 0.94476 0.92933 0.95141
1.21592 0.98446 0.91720 1.02130 1.21077 0.91351 0.84609 1.00498
1.45032 1.10901 1.03583 1.79099 1.16141 0.85034 0.81410 0.77732
1.90893 1.16421 1.84848 1.60014 1.44854 1.09469 1.04675 1.79961
1.20969 0.95917 0.78644 1.02444 1.21528 0.97828 0.91000 1.05181
1.22827 0.87611 0.87784 1.03374 1.86052 1.36365 1.13088 1.88802
1.19261 0.93862 0.83297 1.00201 1.21515 0.93954 0.98839 1.06358
1.21490 1.01477 0.91545 0.95944 1.21367 0.90706 1.01915 1.00578
1.21349 0.99909 0.92138 1.00324 1.17514 0.77169 0.92837 1.11477
1.91452 1.35743 1.91172 1.94664 0.92834 0.98906 0.98884 0.91366
0.91339 0.93478 0.93485 0.75123 0.74976 0.91733 0.91723 0.89457
0.89461 0.90123 0.90133 0.82770 0.82164 0.81870 0.82483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16
2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16
3 Si 0.97 43.72 29.54 68.60 2.03 45.75 16
4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16
7 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16
8 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16
9 C 0.02 1.18 4.97 29.85 0.15 1.33 16
10 C -0.10 -3.87 5.27 30.60 0.16 -3.70 16
11 C 0.15 5.31 5.67 86.38 0.49 5.80 16
12 N -0.73 -20.01 5.56 -478.54 -2.66 -22.67 16
13 C 0.70 20.25 8.57 179.05 1.53 21.79 16
14 O -0.64 -24.88 16.34 -3.96 -0.06 -24.94 16
15 N -0.73 -13.68 5.56 -478.54 -2.66 -16.34 16
16 C 0.14 2.27 5.67 86.38 0.49 2.76 16
17 C -0.12 -1.28 5.70 30.59 0.17 -1.10 16
18 C 0.06 0.66 4.74 71.98 0.34 1.00 16
19 O -0.33 -5.79 10.00 -93.06 -0.93 -6.72 16
20 C 0.08 1.32 6.69 22.53 0.15 1.47 16
21 C -0.19 -2.06 9.04 22.36 0.20 -1.86 16
22 C -0.09 -0.64 10.04 22.26 0.22 -0.42 16
23 C -0.13 -0.91 10.04 22.28 0.22 -0.69 16
24 C -0.12 -1.33 10.02 22.29 0.22 -1.11 16
25 C 0.03 0.52 7.31 22.45 0.16 0.69 16
26 F -0.15 -3.30 17.11 44.97 0.77 -2.53 16
27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16
28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16
30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16
31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16
32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
34 H 0.41 8.29 8.49 -92.71 -0.79 7.51 16
35 H 0.41 5.00 8.49 -92.71 -0.79 4.21 16
36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
38 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16
39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
40 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16
41 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16
42 H 0.15 1.10 6.30 -2.91 -0.02 1.08 16
43 H 0.16 0.28 8.06 -2.91 -0.02 0.25 16
44 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16
45 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16
Total: -1.00 -78.02 387.27 1.42 -76.60
By element:
Atomic # 1 Polarization: 11.91 SS G_CDS: -0.57 Total: 11.34 kcal
Atomic # 6 Polarization: -8.89 SS G_CDS: 5.22 Total: -3.66 kcal
Atomic # 7 Polarization: -90.80 SS G_CDS: -5.04 Total: -95.84 kcal
Atomic # 8 Polarization: -30.67 SS G_CDS: -1.00 Total: -31.66 kcal
Atomic # 9 Polarization: -3.30 SS G_CDS: 0.77 Total: -2.53 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal
Total: -78.02 1.42 -76.60 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000728950041.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.632 kcal
(2) G-P(sol) polarization free energy of solvation -78.021 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds