Wall clock time and date at job start Tue Mar 31 2020 14:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37889 * 119.97765 * 2 1 4 4 C 1.39377 * 119.95069 * 179.97438 * 3 2 1 5 5 C 1.48349 * 120.05091 * 179.97438 * 4 3 2 6 6 C 1.39357 * 120.12354 * 359.72399 * 5 4 3 7 7 C 1.38009 * 119.87634 * 179.74227 * 6 5 4 8 8 C 1.38325 * 120.12235 * 0.53674 * 7 6 5 9 9 C 1.38324 * 120.24928 * 359.72118 * 8 7 6 10 10 C 1.38018 * 120.12046 * 0.02562 * 9 8 7 11 11 C 1.39423 * 119.89551 * 359.75262 * 4 3 2 12 12 C 1.37844 * 119.94828 * 0.50099 * 11 4 3 13 13 C 1.38957 * 119.97356 * 179.97438 * 2 1 3 14 14 N 1.39848 * 119.94819 * 0.04400 * 13 2 1 15 15 C 1.34772 * 120.00063 * 145.20865 * 14 13 2 16 16 O 1.21586 * 120.00118 * 4.51805 * 15 14 13 17 17 N 1.34777 * 120.00069 * 184.52453 * 15 14 13 18 18 C 1.46498 * 119.99834 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46861 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47116 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99686 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99817 * 179.97438 * 20 19 18 23 23 N 1.31505 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99699 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46868 * 60.00131 * 24 22 20 26 26 H 1.48499 * 109.46863 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47358 * 300.00507 * 24 22 20 28 28 H 1.09000 * 109.47307 * 270.02339 * 1 2 3 29 29 H 1.09006 * 109.46728 * 30.02039 * 1 2 3 30 30 H 1.09003 * 109.47054 * 150.01911 * 1 2 3 31 31 H 1.08003 * 120.02178 * 359.95248 * 3 2 1 32 32 H 1.08004 * 120.05944 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.94065 * 180.25263 * 7 6 5 34 34 H 1.07998 * 119.87666 * 179.74000 * 8 7 6 35 35 H 1.08001 * 119.94381 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.06196 * 180.02562 * 10 9 8 37 37 H 1.07996 * 120.02072 * 180.27939 * 11 4 3 38 38 H 1.07997 * 119.97150 * 179.77582 * 12 11 4 39 39 H 0.96994 * 119.99953 * 325.20447 * 14 13 2 40 40 H 0.97001 * 119.99816 * 359.97438 * 17 15 14 41 41 H 1.08996 * 109.47399 * 299.99660 * 18 17 15 42 42 H 1.08997 * 109.47553 * 59.99928 * 18 17 15 43 43 H 1.09007 * 109.46889 * 299.99534 * 19 18 17 44 44 H 1.08990 * 109.47340 * 59.99934 * 19 18 17 45 45 H 0.97006 * 120.00141 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1944 0.0000 4 6 3.5897 1.1938 0.0005 5 6 4.3332 2.4775 0.0000 6 6 3.6407 3.6868 -0.0069 7 6 4.3375 4.8781 -0.0020 8 6 5.7207 4.8732 -0.0015 9 6 6.4133 3.6759 -0.0001 10 6 5.7268 2.4786 0.0003 11 6 4.2841 -0.0153 0.0063 12 6 3.5911 -1.2068 0.0010 13 6 2.2012 -1.2037 0.0005 14 7 1.5003 -2.4139 0.0001 15 6 1.9924 -3.4774 -0.6654 16 8 3.0841 -3.4103 -1.1965 17 7 1.2744 -4.6154 -0.7425 18 6 1.8092 -5.7713 -1.4664 19 6 0.8042 -6.9232 -1.4016 20 6 1.3540 -8.1121 -2.1469 21 1 2.3234 -8.0522 -2.6191 22 6 0.6199 -9.2765 -2.2249 23 7 -0.5603 -9.3495 -1.6494 24 14 1.3011 -10.7499 -3.1493 25 1 2.5820 -11.1742 -2.5292 26 1 0.3258 -11.8679 -3.0862 27 1 1.5369 -10.3787 -4.5677 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6559 2.1298 -0.0008 32 1 2.5607 3.6917 -0.0114 33 1 3.8018 5.8159 -0.0032 34 1 6.2620 5.8078 -0.0020 35 1 7.4933 3.6778 0.0007 36 1 6.2685 1.5443 0.0018 37 1 5.3640 -0.0181 0.0113 38 1 4.1286 -2.1436 0.0018 39 1 0.6600 -2.4878 0.4789 40 1 0.4036 -4.6691 -0.3186 41 1 1.9837 -5.4991 -2.5074 42 1 2.7486 -6.0831 -1.0101 43 1 0.6302 -7.1953 -0.3605 44 1 -0.1354 -6.6117 -1.8577 45 1 -1.0770 -10.1687 -1.7046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752485909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:26 Heat of formation + Delta-G solvation = -8.354389 kcal Electronic energy + Delta-G solvation = -25204.084751 eV Core-core repulsion = 21570.918236 eV Total energy + Delta-G solvation = -3633.166515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83704 -40.53979 -39.26759 -36.77047 -35.98200 -34.86254 -33.76858 -32.80461 -31.79418 -31.40730 -29.25805 -27.79831 -26.67062 -24.66078 -23.85424 -23.04628 -22.59054 -21.88309 -21.23821 -19.57763 -18.75797 -18.43365 -17.95197 -16.97151 -16.57428 -16.53083 -16.33761 -16.13197 -15.36439 -15.29386 -15.24957 -14.81266 -14.69340 -14.65328 -14.54995 -14.27158 -13.87493 -13.79256 -13.35687 -13.23483 -12.99612 -12.88054 -12.69364 -12.54280 -12.44840 -12.26354 -11.98506 -11.73413 -11.67918 -11.55095 -11.41251 -11.09322 -10.60264 -10.22771 -9.91207 -9.82927 -9.69615 -8.59368 -8.24063 -6.34211 -0.27305 0.42657 0.53112 0.91409 1.41837 1.44187 1.51316 1.58988 2.01807 2.40954 2.69323 3.10912 3.14894 3.21705 3.65687 3.76819 3.89981 4.11416 4.15848 4.22783 4.32495 4.39500 4.43887 4.49803 4.51598 4.63207 4.66618 4.78395 4.83519 4.84795 4.96367 5.01117 5.18147 5.22643 5.25626 5.27597 5.36208 5.43002 5.47803 5.53677 5.58471 5.62213 5.64625 5.77781 5.82918 5.95216 6.04529 6.13299 6.16230 6.78347 6.96116 7.34871 7.43674 8.87410 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001871 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.716219 B =14958.399729 C =15712.790532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C -0.092 4.092 4 C -0.070 4.070 5 C -0.056 4.056 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.126 4.126 10 C -0.131 4.131 11 C -0.106 4.106 12 C -0.136 4.136 13 C 0.151 3.849 14 N -0.670 5.670 15 C 0.697 3.303 16 O -0.617 6.617 17 N -0.725 5.725 18 C 0.160 3.840 19 C 0.023 3.977 20 C -0.548 4.548 21 H 0.059 0.941 22 C 0.008 3.992 23 N -0.925 5.925 24 Si 0.964 3.036 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.269 1.269 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.422 0.578 40 H 0.409 0.591 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.011 0.989 44 H 0.010 0.990 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 30.301 7.089 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.112 4.112 3 C -0.110 4.110 4 C -0.071 4.071 5 C -0.056 4.056 6 C -0.139 4.139 7 C -0.141 4.141 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.124 4.124 12 C -0.157 4.157 13 C 0.055 3.945 14 N -0.319 5.319 15 C 0.398 3.602 16 O -0.497 6.497 17 N -0.379 5.379 18 C 0.036 3.964 19 C -0.014 4.014 20 C -0.586 4.586 21 H 0.077 0.923 22 C -0.191 4.191 23 N -0.564 5.564 24 Si 0.788 3.212 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.260 0.740 40 H 0.245 0.755 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.735 30.127 6.614 31.373 hybrid contribution -0.365 -1.490 -0.079 1.536 sum 5.371 28.637 6.534 29.860 Atomic orbital electron populations 1.20814 0.88539 1.03898 1.03744 1.19879 0.97721 0.90620 1.03014 1.21156 0.92691 0.97873 0.99281 1.18910 0.93597 0.92084 1.02479 1.18903 0.93419 0.92194 1.01080 1.21491 1.00944 0.91504 0.99984 1.21432 0.94706 0.98527 0.99390 1.21569 0.94786 0.98778 0.99417 1.21381 1.01018 0.92208 0.99755 1.21472 0.93576 0.99245 1.00553 1.21196 1.00411 0.90982 0.99809 1.21216 0.93474 0.99055 1.01952 1.17650 0.91040 0.84592 1.01181 1.42390 1.26947 1.08683 1.53899 1.16128 0.83962 0.80734 0.79400 1.90875 1.22083 1.83344 1.53395 1.45225 1.22524 1.11937 1.58253 1.21135 0.97072 0.83734 0.94459 1.19137 0.94000 0.91680 0.96609 1.21425 1.04309 0.98293 1.34598 0.92301 1.25842 0.95112 1.01748 0.96355 1.70042 1.12738 1.28649 1.44983 0.85518 0.78255 0.78207 0.79182 1.19405 1.20567 1.19432 0.89164 0.89461 0.91844 0.82733 0.84182 0.83558 0.83841 0.84248 0.85619 0.84828 0.86406 0.73952 0.75464 0.93626 0.93519 0.97113 0.97129 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.47 71.23 0.67 -0.88 16 2 C -0.11 -2.25 5.89 -19.78 -0.12 -2.37 16 3 C -0.09 -1.75 9.07 22.46 0.20 -1.55 16 4 C -0.07 -1.54 5.88 -20.03 -0.12 -1.66 16 5 C -0.06 -1.09 5.88 -20.05 -0.12 -1.21 16 6 C -0.12 -1.86 9.43 22.48 0.21 -1.65 16 7 C -0.12 -1.55 10.03 22.24 0.22 -1.33 16 8 C -0.13 -1.61 10.04 22.31 0.22 -1.38 16 9 C -0.13 -1.84 10.03 22.24 0.22 -1.62 16 10 C -0.13 -2.38 9.43 22.49 0.21 -2.17 16 11 C -0.11 -2.66 9.42 22.46 0.21 -2.45 16 12 C -0.14 -4.08 8.68 22.36 0.19 -3.88 16 13 C 0.15 4.03 6.29 38.21 0.24 4.27 16 14 N -0.67 -17.47 4.74 -317.10 -1.50 -18.97 16 15 C 0.70 24.27 8.41 179.06 1.51 25.78 16 16 O -0.62 -26.46 13.75 -3.99 -0.05 -26.51 16 17 N -0.73 -24.98 5.56 -478.55 -2.66 -27.64 16 18 C 0.16 6.86 5.61 86.38 0.48 7.35 16 19 C 0.02 1.16 5.09 29.85 0.15 1.31 16 20 C -0.55 -30.44 9.11 25.60 0.23 -30.21 16 21 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 22 C 0.01 0.47 5.46 84.66 0.46 0.93 16 23 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 24 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.93 8.08 -2.38 -0.02 0.91 16 30 H 0.06 0.94 7.16 -2.39 -0.02 0.92 16 31 H 0.16 1.97 6.20 -2.91 -0.02 1.95 16 32 H 0.14 1.56 6.20 -2.91 -0.02 1.54 16 33 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 34 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.13 2.14 6.20 -2.91 -0.02 2.12 16 37 H 0.13 2.95 6.20 -2.91 -0.02 2.93 16 38 H 0.12 4.13 6.19 -2.91 -0.02 4.12 16 39 H 0.42 7.88 7.85 -92.71 -0.73 7.16 16 40 H 0.41 11.67 8.49 -92.71 -0.79 10.89 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -71.20 374.90 2.71 -68.49 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.48 Total: 25.31 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.10 Total: -12.72 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -3.88 Total: -100.08 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.20 2.71 -68.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752485909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.134 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds