Wall clock time and date at job start Tue Mar 31 2020 14:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37878 * 120.02611 * 2 1 4 4 C 1.39002 * 120.04885 * 180.29030 * 3 2 1 5 5 N 1.39550 * 119.95492 * 179.72186 * 4 3 2 6 6 C 1.46507 * 120.00056 * 179.72670 * 5 4 3 7 7 C 1.50697 * 109.47005 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73077 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00629 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99714 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00194 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00298 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46756 * 90.00237 * 15 13 11 17 17 H 1.48496 * 109.47426 * 210.00339 * 15 13 11 18 18 H 1.48507 * 109.47018 * 330.00525 * 15 13 11 19 19 C 1.39040 * 120.08586 * 359.45742 * 4 3 2 20 20 C 1.37831 * 120.05092 * 0.24400 * 19 4 3 21 21 C 1.39387 * 120.02232 * 179.72089 * 2 1 3 22 22 C 1.48334 * 120.04485 * 359.96275 * 21 2 1 23 23 C 1.39365 * 120.12320 * 309.74404 * 22 21 2 24 24 C 1.38014 * 119.87236 * 179.77105 * 23 22 21 25 25 C 1.38320 * 120.12475 * 0.48255 * 24 23 22 26 26 C 1.38319 * 120.25026 * 359.76782 * 25 24 23 27 27 C 1.38013 * 120.12587 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47137 * 270.27655 * 1 2 3 29 29 H 1.09009 * 109.46955 * 30.27724 * 1 2 3 30 30 H 1.08996 * 109.47125 * 150.27575 * 1 2 3 31 31 H 1.07997 * 119.97791 * 0.02562 * 3 2 1 32 32 H 0.97004 * 120.00391 * 359.73228 * 5 4 3 33 33 H 1.09001 * 109.46566 * 60.00892 * 6 5 4 34 34 H 1.08993 * 109.47390 * 300.00681 * 6 5 4 35 35 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 36 36 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 37 37 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 38 38 H 0.96996 * 120.00207 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.97662 * 180.27193 * 19 4 3 40 40 H 1.08000 * 120.02582 * 180.02562 * 20 19 4 41 41 H 1.07995 * 120.06073 * 359.97404 * 23 22 21 42 42 H 1.08011 * 119.93659 * 180.23124 * 24 23 22 43 43 H 1.08003 * 119.87507 * 179.74773 * 25 24 23 44 44 H 1.08008 * 119.94032 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.06370 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1937 0.0000 4 6 3.5869 1.1943 -0.0061 5 7 4.2832 2.4037 -0.0120 6 6 5.7483 2.4054 -0.0123 7 6 6.2489 3.8268 -0.0185 8 8 5.4597 4.7478 -0.0272 9 7 7.5737 4.0747 -0.0204 10 6 8.0604 5.4565 -0.0324 11 6 9.5674 5.4582 -0.0328 12 1 10.1085 4.5236 -0.0244 13 6 10.2553 6.6530 -0.0426 14 7 11.5705 6.6546 -0.0435 15 14 9.3195 8.2696 -0.0563 16 1 9.0714 8.7097 1.3401 17 1 10.1209 9.2996 -0.7649 18 1 8.0221 8.0847 -0.7550 19 6 4.2844 -0.0085 -0.0008 20 6 3.5987 -1.2040 0.0054 21 6 2.2044 -1.2068 0.0059 22 6 1.4642 -2.4923 0.0130 23 6 0.4479 -2.7090 0.9416 24 6 -0.2406 -3.9052 0.9405 25 6 0.0831 -4.8917 0.0266 26 6 1.0944 -4.6841 -0.8940 27 6 1.7868 -3.4902 -0.9049 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5182 30 1 -0.3633 -0.8924 -0.5095 31 1 1.6570 2.1291 0.0004 32 1 3.7972 3.2432 -0.0157 33 1 6.1119 1.8880 -0.9001 34 1 6.1125 1.8962 0.8798 35 1 8.2050 3.3382 -0.0138 36 1 7.6967 5.9620 -0.9269 37 1 7.6963 5.9776 0.8529 38 1 12.0545 7.4952 -0.0500 39 1 5.3645 -0.0059 -0.0011 40 1 4.1409 -2.1380 0.0099 41 1 0.1973 -1.9412 1.6585 42 1 -1.0311 -4.0728 1.6572 43 1 -0.4556 -5.8278 0.0320 44 1 1.3434 -5.4580 -1.6050 45 1 2.5760 -3.3290 -1.6243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762535331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:13 Heat of formation + Delta-G solvation = 5.327844 kcal Electronic energy + Delta-G solvation = -25014.448247 eV Core-core repulsion = 21381.875038 eV Total energy + Delta-G solvation = -3632.573209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26201 -39.38332 -38.55694 -35.75236 -34.45394 -32.63980 -32.49568 -32.05294 -31.04045 -29.59254 -28.12488 -26.98542 -26.00340 -23.29177 -22.63795 -22.28297 -21.62745 -20.46111 -19.94848 -18.03625 -17.38537 -16.75352 -16.37555 -15.97537 -15.55570 -15.50305 -15.28362 -14.92959 -14.60087 -14.32631 -14.02843 -13.84820 -13.70915 -13.61972 -13.32947 -13.19420 -12.87510 -12.74300 -12.52852 -12.40326 -12.36898 -12.10553 -11.91184 -11.35527 -11.13875 -11.05687 -11.02370 -10.84607 -10.17559 -10.05242 -9.59906 -9.49492 -9.17083 -8.96979 -8.86602 -8.82254 -8.33791 -7.34095 -6.28448 -4.31738 0.84655 1.16714 1.35051 1.68395 2.96096 3.16643 3.21698 3.29057 3.35497 3.51508 3.79482 3.91988 4.26659 4.51622 4.66683 4.72341 4.76098 4.82052 4.88979 5.05526 5.06557 5.15814 5.20961 5.24852 5.29072 5.32969 5.33477 5.42895 5.48329 5.64334 5.69103 5.75970 5.81078 5.96428 6.16045 6.21179 6.26939 6.32770 6.37416 6.62315 6.65900 6.74189 6.77399 6.95331 7.02540 7.23138 7.27942 7.69999 7.99392 8.36571 8.60670 8.73880 9.30598 10.83304 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.035626 B = 0.001807 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.745032 B =15490.330919 C =16095.427951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.020 4.020 3 C -0.198 4.198 4 C 0.234 3.766 5 N -0.729 5.729 6 C 0.103 3.897 7 C 0.495 3.505 8 O -0.556 6.556 9 N -0.698 5.698 10 C 0.220 3.780 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.079 3.921 14 N -0.890 5.890 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.261 1.261 19 C -0.207 4.207 20 C -0.049 4.049 21 C -0.125 4.125 22 C -0.022 4.022 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.114 4.114 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.412 0.588 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.400 0.600 36 H 0.027 0.973 37 H 0.022 0.978 38 H 0.269 0.731 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.358 -21.948 0.146 31.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.021 4.021 3 C -0.220 4.220 4 C 0.129 3.871 5 N -0.360 5.360 6 C -0.026 4.026 7 C 0.279 3.721 8 O -0.435 6.435 9 N -0.347 5.347 10 C 0.098 3.902 11 C -0.585 4.585 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.527 5.527 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.186 1.186 19 C -0.230 4.230 20 C -0.068 4.068 21 C -0.127 4.127 22 C -0.022 4.022 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.132 4.132 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.250 0.750 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.483 -21.113 0.133 30.843 hybrid contribution 0.027 0.875 0.024 0.876 sum -22.456 -20.238 0.157 30.231 Atomic orbital electron populations 1.20923 0.91424 1.02851 1.02234 1.19554 0.95373 0.91502 0.95693 1.20357 0.91811 0.98003 1.11875 1.17860 0.91029 0.86010 0.92209 1.44465 1.04415 1.06278 1.80842 1.21113 0.82272 0.95793 1.03385 1.20390 0.83669 0.90416 0.77584 1.90649 1.55365 1.46046 1.51470 1.46131 1.05337 1.11489 1.71693 1.19543 0.95446 0.78219 0.96956 1.21068 0.88367 0.95334 1.53736 0.90128 1.24793 0.94804 0.99179 0.93771 1.69874 1.06244 1.27497 1.49066 0.86815 0.80539 0.83242 0.79068 1.19815 1.20795 1.18572 1.20583 0.99735 0.90923 1.11710 1.20865 0.92725 0.97331 0.95884 1.18321 0.92704 0.91190 1.10490 1.18741 0.95358 0.92954 0.95173 1.21303 0.95911 0.97352 0.98440 1.21084 0.99929 0.93776 0.99082 1.21152 0.98159 0.99165 0.96192 1.21085 0.96413 0.97254 0.98993 1.21276 1.00057 0.93205 0.98651 0.91084 0.91630 0.91155 0.86004 0.74979 0.89304 0.89328 0.76650 0.95521 0.95978 0.92158 0.85827 0.86115 0.85952 0.86201 0.86384 0.86182 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.45 36.01 0.30 -0.67 16 2 C -0.02 -0.21 5.87 -104.33 -0.61 -0.83 16 3 C -0.20 -2.25 9.53 -39.43 -0.38 -2.63 16 4 C 0.23 2.84 6.65 -83.76 -0.56 2.28 16 5 N -0.73 -9.48 5.70 -59.78 -0.34 -9.82 16 6 C 0.10 1.30 5.39 -5.19 -0.03 1.27 16 7 C 0.50 8.68 7.90 -10.98 -0.09 8.59 16 8 O -0.56 -11.73 15.67 5.56 0.09 -11.65 16 9 N -0.70 -13.19 5.55 -61.48 -0.34 -13.53 16 10 C 0.22 5.22 4.50 -5.19 -0.02 5.20 16 11 C -0.55 -14.60 9.83 -34.44 -0.34 -14.94 16 12 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 14 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 15 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 19 C -0.21 -2.29 9.29 -39.43 -0.37 -2.65 16 20 C -0.05 -0.51 9.50 -39.29 -0.37 -0.89 16 21 C -0.12 -1.32 5.48 -104.87 -0.57 -1.89 16 22 C -0.02 -0.21 4.71 -104.90 -0.49 -0.71 16 23 C -0.11 -0.96 7.91 -39.24 -0.31 -1.27 16 24 C -0.12 -0.91 10.03 -39.63 -0.40 -1.31 16 25 C -0.13 -0.94 10.04 -39.52 -0.40 -1.34 16 26 C -0.12 -0.92 10.03 -39.63 -0.40 -1.31 16 27 C -0.11 -1.00 9.51 -39.24 -0.37 -1.37 16 28 H 0.07 0.51 7.50 -51.93 -0.39 0.12 16 29 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 30 H 0.07 0.58 6.46 -51.93 -0.34 0.25 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.41 5.76 7.45 -40.82 -0.30 5.46 16 33 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 34 H 0.09 0.97 7.94 -51.93 -0.41 0.55 16 35 H 0.40 6.48 8.32 -40.82 -0.34 6.14 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 37 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 1.20 6.71 -52.49 -0.35 0.85 16 40 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 41 H 0.12 0.95 6.87 -52.49 -0.36 0.59 16 42 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -31.58 375.69 -10.53 -42.12 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.21 Total: 8.41 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -5.50 Total: -12.37 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.09 Total: -48.52 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.58 -10.53 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762535331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.445 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds