Wall clock time and date at job start Tue Mar 31 2020 14:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37878 * 120.02611 * 2 1 4 4 C 1.39002 * 120.04885 * 180.29030 * 3 2 1 5 5 N 1.39550 * 119.95492 * 179.72186 * 4 3 2 6 6 C 1.46507 * 120.00056 * 179.72670 * 5 4 3 7 7 C 1.50697 * 109.47005 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73077 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00629 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99714 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00194 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00298 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46756 * 90.00237 * 15 13 11 17 17 H 1.48496 * 109.47426 * 210.00339 * 15 13 11 18 18 H 1.48507 * 109.47018 * 330.00525 * 15 13 11 19 19 C 1.39040 * 120.08586 * 359.45742 * 4 3 2 20 20 C 1.37831 * 120.05092 * 0.24400 * 19 4 3 21 21 C 1.39387 * 120.02232 * 179.72089 * 2 1 3 22 22 C 1.48334 * 120.04485 * 359.96275 * 21 2 1 23 23 C 1.39365 * 120.12320 * 309.74404 * 22 21 2 24 24 C 1.38014 * 119.87236 * 179.77105 * 23 22 21 25 25 C 1.38320 * 120.12475 * 0.48255 * 24 23 22 26 26 C 1.38319 * 120.25026 * 359.76782 * 25 24 23 27 27 C 1.38013 * 120.12587 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47137 * 270.27655 * 1 2 3 29 29 H 1.09009 * 109.46955 * 30.27724 * 1 2 3 30 30 H 1.08996 * 109.47125 * 150.27575 * 1 2 3 31 31 H 1.07997 * 119.97791 * 0.02562 * 3 2 1 32 32 H 0.97004 * 120.00391 * 359.73228 * 5 4 3 33 33 H 1.09001 * 109.46566 * 60.00892 * 6 5 4 34 34 H 1.08993 * 109.47390 * 300.00681 * 6 5 4 35 35 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 36 36 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 37 37 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 38 38 H 0.96996 * 120.00207 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.97662 * 180.27193 * 19 4 3 40 40 H 1.08000 * 120.02582 * 180.02562 * 20 19 4 41 41 H 1.07995 * 120.06073 * 359.97404 * 23 22 21 42 42 H 1.08011 * 119.93659 * 180.23124 * 24 23 22 43 43 H 1.08003 * 119.87507 * 179.74773 * 25 24 23 44 44 H 1.08008 * 119.94032 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.06370 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1937 0.0000 4 6 3.5869 1.1943 -0.0061 5 7 4.2832 2.4037 -0.0120 6 6 5.7483 2.4054 -0.0123 7 6 6.2489 3.8268 -0.0185 8 8 5.4597 4.7478 -0.0272 9 7 7.5737 4.0747 -0.0204 10 6 8.0604 5.4565 -0.0324 11 6 9.5674 5.4582 -0.0328 12 1 10.1085 4.5236 -0.0244 13 6 10.2553 6.6530 -0.0426 14 7 11.5705 6.6546 -0.0435 15 14 9.3195 8.2696 -0.0563 16 1 9.0714 8.7097 1.3401 17 1 10.1209 9.2996 -0.7649 18 1 8.0221 8.0847 -0.7550 19 6 4.2844 -0.0085 -0.0008 20 6 3.5987 -1.2040 0.0054 21 6 2.2044 -1.2068 0.0059 22 6 1.4642 -2.4923 0.0130 23 6 0.4479 -2.7090 0.9416 24 6 -0.2406 -3.9052 0.9405 25 6 0.0831 -4.8917 0.0266 26 6 1.0944 -4.6841 -0.8940 27 6 1.7868 -3.4902 -0.9049 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5182 30 1 -0.3633 -0.8924 -0.5095 31 1 1.6570 2.1291 0.0004 32 1 3.7972 3.2432 -0.0157 33 1 6.1119 1.8880 -0.9001 34 1 6.1125 1.8962 0.8798 35 1 8.2050 3.3382 -0.0138 36 1 7.6967 5.9620 -0.9269 37 1 7.6963 5.9776 0.8529 38 1 12.0545 7.4952 -0.0500 39 1 5.3645 -0.0059 -0.0011 40 1 4.1409 -2.1380 0.0099 41 1 0.1973 -1.9412 1.6585 42 1 -1.0311 -4.0728 1.6572 43 1 -0.4556 -5.8278 0.0320 44 1 1.3434 -5.4580 -1.6050 45 1 2.5760 -3.3290 -1.6243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762535331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:12 Heat of formation + Delta-G solvation = -13.147011 kcal Electronic energy + Delta-G solvation = -25015.249377 eV Core-core repulsion = 21381.875038 eV Total energy + Delta-G solvation = -3633.374339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12150 -40.61539 -39.35201 -36.74921 -36.12022 -34.46633 -33.39758 -32.84635 -31.63295 -30.81788 -29.51852 -27.71871 -27.16091 -24.11970 -23.99033 -23.20835 -22.47678 -21.70185 -20.98532 -19.45879 -18.41128 -18.01433 -17.50529 -16.92883 -16.79290 -16.73306 -16.46654 -15.93603 -15.60071 -15.27797 -15.12666 -14.98520 -14.62031 -14.59892 -14.47119 -14.17941 -14.08398 -13.84174 -13.77145 -13.47203 -13.19463 -13.08766 -12.90018 -12.73543 -12.71398 -11.98496 -11.96022 -11.76288 -11.71739 -11.68077 -11.02547 -10.99563 -10.93881 -10.03149 -9.76098 -9.64928 -9.59653 -8.41586 -8.20188 -6.48963 0.16299 0.52938 0.58934 0.93674 1.31303 1.34185 1.45465 1.56049 2.02983 2.26257 2.68871 2.83106 2.93858 3.06529 3.74629 3.83418 3.94916 4.05298 4.15611 4.20812 4.30044 4.35283 4.37003 4.41772 4.51931 4.60241 4.67280 4.74245 4.79870 4.81767 4.93134 4.99302 5.03000 5.05149 5.22754 5.22958 5.24152 5.40844 5.43024 5.50464 5.63085 5.67693 5.70075 5.88510 5.92916 6.04902 6.18715 6.34550 6.52020 6.66763 6.78186 7.11233 7.28387 8.72937 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.035626 B = 0.001807 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.745032 B =15490.330919 C =16095.427951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.029 4.029 3 C -0.209 4.209 4 C 0.218 3.782 5 N -0.738 5.738 6 C 0.116 3.884 7 C 0.497 3.503 8 O -0.592 6.592 9 N -0.698 5.698 10 C 0.231 3.769 11 C -0.549 4.549 12 H 0.062 0.938 13 C 0.027 3.973 14 N -0.930 5.930 15 Si 0.937 3.063 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.260 1.260 19 C -0.212 4.212 20 C -0.056 4.056 21 C -0.127 4.127 22 C -0.040 4.040 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.125 4.125 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.405 0.595 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.272 0.728 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.019 -23.602 0.260 33.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.030 4.030 3 C -0.231 4.231 4 C 0.114 3.886 5 N -0.370 5.370 6 C -0.011 4.011 7 C 0.284 3.716 8 O -0.474 6.474 9 N -0.348 5.348 10 C 0.108 3.892 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.174 4.174 14 N -0.568 5.568 15 Si 0.761 3.239 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.234 4.234 20 C -0.074 4.074 21 C -0.129 4.129 22 C -0.040 4.040 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.143 4.143 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.242 0.758 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.151 -22.824 0.248 33.231 hybrid contribution 0.481 1.227 -0.011 1.318 sum -23.670 -21.597 0.238 32.043 Atomic orbital electron populations 1.20923 0.90034 1.03062 1.03016 1.19815 0.96534 0.91266 0.95357 1.20520 0.91907 0.98558 1.12145 1.17997 0.91347 0.85924 0.93316 1.44455 1.04314 1.06311 1.81876 1.21096 0.82297 0.92108 1.05611 1.21153 0.82518 0.92190 0.75767 1.90632 1.56103 1.47867 1.52759 1.45932 1.06487 1.10053 1.72324 1.19126 0.93436 0.80832 0.95853 1.21298 0.89926 0.94692 1.52727 0.91983 1.25591 0.95531 1.02634 0.93602 1.69977 1.07718 1.28587 1.50558 0.85870 0.79250 0.79435 0.79391 1.19065 1.19905 1.18461 1.20782 1.00515 0.90687 1.11414 1.21093 0.92932 0.97799 0.95616 1.18568 0.93041 0.91773 1.09548 1.18795 0.96136 0.92843 0.96212 1.21421 0.95907 0.98058 0.98453 1.21370 1.00141 0.93346 0.99463 1.21490 0.97893 0.99947 0.95582 1.21361 0.96253 0.97277 0.99423 1.21415 1.00536 0.93608 0.98777 0.89963 0.91118 0.91167 0.85736 0.75814 0.86917 0.86925 0.75077 0.96775 0.96877 0.91836 0.84465 0.84674 0.85638 0.84246 0.84208 0.84359 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 8.45 71.24 0.60 -1.17 16 2 C -0.03 -0.59 5.87 -19.67 -0.12 -0.70 16 3 C -0.21 -4.65 9.53 22.37 0.21 -4.44 16 4 C 0.22 5.07 6.65 38.29 0.25 5.33 16 5 N -0.74 -18.48 5.70 -343.05 -1.96 -20.43 16 6 C 0.12 2.73 5.39 85.63 0.46 3.19 16 7 C 0.50 16.95 7.90 87.65 0.69 17.64 16 8 O -0.59 -24.86 15.67 -3.04 -0.05 -24.91 16 9 N -0.70 -25.87 5.55 -466.79 -2.59 -28.46 16 10 C 0.23 10.92 4.50 85.63 0.38 11.30 16 11 C -0.55 -29.47 9.83 25.60 0.25 -29.22 16 12 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 13 C 0.03 1.50 5.47 84.65 0.46 1.96 16 14 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 15 Si 0.94 43.32 27.47 68.60 1.88 45.20 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.26 -11.91 6.54 99.48 0.65 -11.25 16 19 C -0.21 -4.36 9.29 22.37 0.21 -4.15 16 20 C -0.06 -1.09 9.50 22.46 0.21 -0.88 16 21 C -0.13 -2.56 5.48 -20.03 -0.11 -2.67 16 22 C -0.04 -0.72 4.71 -20.05 -0.09 -0.81 16 23 C -0.12 -1.90 7.91 22.49 0.18 -1.72 16 24 C -0.13 -1.62 10.03 22.24 0.22 -1.40 16 25 C -0.13 -1.60 10.04 22.31 0.22 -1.37 16 26 C -0.13 -1.67 10.03 22.24 0.22 -1.45 16 27 C -0.13 -2.03 9.51 22.49 0.21 -1.82 16 28 H 0.08 1.07 7.50 -2.39 -0.02 1.06 16 29 H 0.07 1.00 8.09 -2.38 -0.02 0.98 16 30 H 0.07 1.09 6.46 -2.39 -0.02 1.07 16 31 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.40 11.26 7.45 -92.71 -0.69 10.57 16 33 H 0.11 2.15 7.94 -2.39 -0.02 2.14 16 34 H 0.11 2.15 7.94 -2.39 -0.02 2.13 16 35 H 0.41 12.99 8.32 -92.70 -0.77 12.22 16 36 H 0.01 0.71 7.20 -2.39 -0.02 0.70 16 37 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 38 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.14 2.34 6.71 -2.91 -0.02 2.32 16 40 H 0.14 2.15 8.04 -2.91 -0.02 2.13 16 41 H 0.13 1.80 6.87 -2.91 -0.02 1.78 16 42 H 0.14 1.18 8.06 -2.90 -0.02 1.16 16 43 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.12 1.84 8.04 -2.91 -0.02 1.82 16 Total: -1.00 -67.78 375.69 1.58 -66.20 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.50 Total: 29.19 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.49 Total: -12.38 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -4.25 Total: -103.31 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -67.78 1.58 -66.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762535331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.052 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds