Wall clock time and date at job start Tue Mar 31 2020 14:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38266 * 119.88733 * 2 1 4 4 C 1.37978 * 120.21937 * 179.97438 * 3 2 1 5 5 C 1.39619 * 119.98365 * 359.97438 * 4 3 2 6 6 C 1.47854 * 120.11040 * 180.02562 * 5 4 3 7 7 O 1.21553 * 119.99868 * 185.15244 * 6 5 4 8 8 N 1.34774 * 120.00264 * 5.15429 * 6 5 4 9 9 C 1.46498 * 120.00086 * 185.07330 * 8 6 5 10 10 C 1.53002 * 109.47186 * 184.99453 * 9 8 6 11 11 C 1.50697 * 115.54799 * 54.23812 * 10 9 8 12 12 H 1.07995 * 120.00091 * 215.59128 * 11 10 9 13 13 C 1.37879 * 120.00031 * 35.32346 * 11 10 9 14 14 N 1.31513 * 119.99921 * 355.77854 * 13 11 10 15 15 Si 1.86802 * 120.00197 * 175.78201 * 13 11 10 16 16 H 1.48492 * 109.46991 * 59.99366 * 15 13 11 17 17 H 1.48491 * 109.47070 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46611 * 299.99717 * 15 13 11 19 19 C 1.53003 * 117.49798 * 199.91217 * 10 9 8 20 20 C 1.53001 * 117.49891 * 268.56873 * 10 9 8 21 21 C 1.39464 * 119.77283 * 0.27691 * 5 4 3 22 22 C 1.38589 * 119.78695 * 359.44942 * 21 5 4 23 23 N 1.40225 * 119.99790 * 180.25187 * 22 21 5 24 24 C 1.36566 * 125.66883 * 129.99362 * 23 22 21 25 25 C 1.34846 * 108.19882 * 179.83050 * 24 23 22 26 26 C 1.40942 * 107.47133 * 0.42322 * 25 24 23 27 27 C 1.34853 * 107.46074 * 359.73667 * 26 25 24 28 28 H 1.08995 * 109.47353 * 90.00145 * 1 2 3 29 29 H 1.09004 * 109.46898 * 210.00406 * 1 2 3 30 30 H 1.09005 * 109.46784 * 329.99779 * 1 2 3 31 31 H 1.07999 * 119.88721 * 359.95378 * 3 2 1 32 32 H 1.07996 * 120.00482 * 179.97438 * 4 3 2 33 33 H 0.97002 * 119.99837 * 5.07642 * 8 6 5 34 34 H 1.09003 * 109.47256 * 64.99440 * 9 8 6 35 35 H 1.08996 * 109.47209 * 304.99423 * 9 8 6 36 36 H 0.97001 * 120.00436 * 185.00444 * 14 13 11 37 37 H 1.08998 * 117.49419 * 215.00409 * 19 10 9 38 38 H 1.08996 * 117.49982 * 0.02562 * 19 10 9 39 39 H 1.08999 * 117.49565 * 359.97438 * 20 10 9 40 40 H 1.08997 * 117.49574 * 144.97306 * 20 10 9 41 41 H 1.08004 * 120.10645 * 179.72681 * 21 5 4 42 42 H 1.07997 * 125.89975 * 0.02562 * 24 23 22 43 43 H 1.08001 * 126.26659 * 180.13878 * 25 24 23 44 44 H 1.07990 * 126.26851 * 179.71169 * 26 25 24 45 45 H 1.08004 * 125.89618 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1988 0.0000 4 6 3.5757 1.2068 0.0005 5 6 4.2805 0.0015 0.0016 6 6 5.7590 0.0068 0.0028 7 8 6.3706 -1.0395 -0.0908 8 7 6.4287 1.1717 0.1076 9 6 7.8894 1.1894 -0.0028 10 6 8.4047 2.6030 0.2745 11 6 7.9620 3.2118 1.5800 12 1 7.7553 4.2701 1.6398 13 6 7.8154 2.4166 2.6969 14 7 7.9811 1.1153 2.6039 15 14 7.3813 3.1877 4.3420 16 1 6.0793 3.8927 4.2301 17 1 7.2817 2.1259 5.3753 18 1 8.4377 4.1573 4.7282 19 6 9.8050 2.9563 -0.2309 20 6 8.5712 3.5417 -0.9222 21 6 3.5850 -1.2074 -0.0037 22 6 2.1992 -1.2044 0.0015 23 7 1.4955 -2.4173 0.0016 24 6 0.4823 -2.7501 0.8547 25 6 0.0582 -3.9911 0.5410 26 6 0.8426 -4.4463 -0.5379 27 6 1.7134 -3.4643 -0.8477 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6523 2.1319 -0.0008 32 1 4.1104 2.1451 0.0001 33 1 5.9435 1.9984 0.2562 34 1 8.1815 0.8869 -1.0085 35 1 8.3170 0.4979 0.7232 36 1 7.8073 0.5481 3.3714 37 1 10.4060 3.6290 0.3810 38 1 10.3589 2.1818 -0.7613 39 1 8.3139 3.1519 -1.9071 40 1 8.3600 4.5995 -0.7653 41 1 4.1248 -2.1429 -0.0073 42 1 0.0868 -2.1259 1.6422 43 1 -0.7342 -4.5382 1.0302 44 1 0.7614 -5.4058 -1.0266 45 1 2.4553 -3.4999 -1.6318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:21 Heat of formation + Delta-G solvation = 61.921282 kcal Electronic energy + Delta-G solvation = -26765.159189 eV Core-core repulsion = 23135.040056 eV Total energy + Delta-G solvation = -3630.119133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.64506 -40.98163 -39.46171 -38.38583 -35.09063 -34.31940 -34.04017 -33.63477 -30.14963 -29.92951 -28.85018 -27.66218 -26.79444 -24.02367 -23.56796 -22.95054 -21.94667 -21.20718 -21.12413 -20.71070 -19.47024 -18.32027 -17.57973 -17.20296 -16.76570 -16.44766 -16.17197 -15.99370 -15.58756 -15.23086 -15.02405 -14.82241 -14.66628 -14.55536 -14.44774 -14.15965 -13.66061 -13.48836 -13.38573 -13.19701 -13.00274 -12.88185 -12.82641 -12.61085 -12.58496 -12.32234 -12.26029 -12.03851 -11.56718 -11.00706 -10.84442 -10.66526 -10.55605 -10.17211 -10.01426 -9.65806 -9.26237 -9.14230 -7.94613 -6.21547 -0.33800 -0.00017 1.29273 1.41820 1.45773 1.51694 1.85862 1.88885 2.08191 2.39359 2.43523 2.74347 3.06407 3.58855 3.63872 3.69138 3.89467 3.96888 4.01912 4.15901 4.26142 4.27608 4.46979 4.53124 4.54228 4.65463 4.66759 4.72857 4.74355 4.79348 4.80957 4.96320 5.02171 5.12892 5.14925 5.20055 5.26469 5.30968 5.32720 5.36591 5.52415 5.59268 5.62870 5.83115 5.97538 6.00645 6.23890 6.35743 6.48562 6.75150 6.91358 7.43581 7.45267 8.90388 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.003240 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.099212 B = 8639.687573 C = 9040.968168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.100 4.100 4 C -0.077 4.077 5 C -0.130 4.130 6 C 0.541 3.459 7 O -0.600 6.600 8 N -0.666 5.666 9 C 0.174 3.826 10 C 0.007 3.993 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.035 3.965 14 N -0.891 5.891 15 Si 0.947 3.053 16 H -0.263 1.263 17 H -0.297 1.297 18 H -0.275 1.275 19 C -0.202 4.202 20 C -0.183 4.183 21 C -0.075 4.075 22 C 0.099 3.901 23 N -0.405 5.405 24 C -0.020 4.020 25 C -0.203 4.203 26 C -0.202 4.202 27 C -0.032 4.032 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.148 0.852 33 H 0.405 0.595 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.184 0.816 43 H 0.160 0.840 44 H 0.154 0.846 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.597 -1.068 -5.517 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.060 4.060 3 C -0.118 4.118 4 C -0.096 4.096 5 C -0.133 4.133 6 C 0.329 3.671 7 O -0.484 6.484 8 N -0.312 5.312 9 C 0.050 3.950 10 C 0.006 3.994 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.166 4.166 14 N -0.528 5.528 15 Si 0.773 3.227 16 H -0.187 1.187 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.240 4.240 20 C -0.220 4.220 21 C -0.095 4.095 22 C 0.008 3.992 23 N -0.078 5.078 24 C -0.146 4.146 25 C -0.227 4.227 26 C -0.226 4.226 27 C -0.159 4.159 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.194 0.806 32 H 0.166 0.834 33 H 0.241 0.759 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.135 0.865 42 H 0.201 0.799 43 H 0.177 0.823 44 H 0.172 0.828 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.916 -1.647 -5.465 18.804 hybrid contribution 0.601 0.233 0.987 1.179 sum -17.316 -1.414 -4.478 17.941 Atomic orbital electron populations 1.21186 0.87882 1.05291 1.04073 1.20366 0.98359 0.90684 0.96593 1.21298 0.92754 0.98650 0.99096 1.21700 0.95475 0.96939 0.95488 1.19807 0.92185 0.94830 1.06526 1.18574 0.87767 0.83809 0.76971 1.90666 1.70796 1.33060 1.53884 1.45422 1.08175 1.08597 1.69029 1.20792 0.79384 0.98153 0.96669 1.19256 0.95530 0.91593 0.92993 1.20695 1.46383 0.94499 0.92637 0.91936 1.25603 0.94608 0.94981 1.01440 1.70055 1.47915 1.04113 1.30679 0.85784 0.79203 0.77808 0.79903 1.18728 1.22314 1.20065 1.22967 0.92313 1.03640 1.05092 1.22961 1.03215 0.99178 0.96646 1.20979 0.92604 0.98046 0.97892 1.17517 0.89724 0.85439 1.06481 1.41563 1.28134 1.11072 1.27076 1.22273 0.94170 0.98946 0.99222 1.21270 1.04414 0.95771 1.01214 1.21239 0.99558 1.00125 1.01710 1.22250 1.05080 0.88678 0.99866 0.89919 0.89981 0.88274 0.80565 0.83421 0.75896 0.96340 0.90239 0.93579 0.90416 0.90737 0.89629 0.89425 0.86547 0.79945 0.82260 0.82826 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.72 71.24 0.69 -1.12 16 2 C -0.06 -1.23 5.88 -19.70 -0.12 -1.34 16 3 C -0.10 -1.98 9.67 22.21 0.21 -1.77 16 4 C -0.08 -2.04 9.51 22.54 0.21 -1.82 16 5 C -0.13 -4.51 5.87 -20.10 -0.12 -4.62 16 6 C 0.54 23.76 7.76 86.79 0.67 24.44 16 7 O -0.60 -31.24 16.34 -3.88 -0.06 -31.30 16 8 N -0.67 -28.63 4.96 -465.97 -2.31 -30.94 16 9 C 0.17 8.30 4.62 86.38 0.40 8.70 16 10 C 0.01 0.32 2.04 -52.93 -0.11 0.21 16 11 C -0.50 -24.75 8.43 25.60 0.22 -24.54 16 12 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 13 C 0.04 1.79 5.31 84.66 0.45 2.24 16 14 N -0.89 -48.64 10.11 21.45 0.22 -48.42 16 15 Si 0.95 40.71 29.54 68.60 2.03 42.74 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 17 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 19 C -0.20 -8.44 9.96 30.62 0.30 -8.13 16 20 C -0.18 -6.97 9.92 30.62 0.30 -6.67 16 21 C -0.07 -2.50 9.20 22.65 0.21 -2.29 16 22 C 0.10 2.67 5.96 38.04 0.23 2.90 16 23 N -0.41 -10.28 2.67 -346.79 -0.93 -11.21 16 24 C -0.02 -0.42 9.03 83.18 0.75 0.33 16 25 C -0.20 -4.13 10.86 22.15 0.24 -3.89 16 26 C -0.20 -4.47 10.86 22.15 0.24 -4.23 16 27 C -0.03 -0.79 11.11 83.18 0.92 0.13 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.18 4.19 -2.38 -0.01 1.17 16 30 H 0.10 0.93 8.08 -2.38 -0.02 0.91 16 31 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.15 3.51 6.47 -2.91 -0.02 3.49 16 33 H 0.40 15.75 6.21 -92.71 -0.58 15.17 16 34 H 0.02 0.86 8.09 -2.39 -0.02 0.85 16 35 H 0.08 4.49 5.89 -2.39 -0.01 4.48 16 36 H 0.25 13.94 8.32 -92.71 -0.77 13.17 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.09 2.97 8.14 -2.39 -0.02 2.96 16 40 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.12 4.36 7.65 -2.91 -0.02 4.33 16 42 H 0.18 2.98 6.98 -2.91 -0.02 2.96 16 43 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.15 2.74 8.06 -2.92 -0.02 2.71 16 45 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -65.29 373.30 5.10 -60.20 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: 0.44 Total: 40.41 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 5.72 Total: -21.48 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -3.02 Total: -90.57 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.06 Total: -31.30 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -65.29 5.10 -60.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.119 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds