Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00162 * 2 1 4 4 H 1.48500 * 109.47513 * 240.00338 * 3 2 1 5 5 H 1.48502 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47443 * 120.00184 * 3 2 1 7 7 C 1.37879 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00012 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47224 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00171 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46892 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47441 * 65.88315 * 12 11 10 14 14 C 1.46850 * 110.99693 * 285.08391 * 13 12 11 15 15 C 1.53038 * 109.52236 * 185.83809 * 14 13 12 16 16 C 1.53115 * 109.27856 * 300.81651 * 15 14 13 17 17 O 1.42907 * 109.52242 * 177.55943 * 16 15 14 18 18 C 1.35960 * 116.99706 * 155.56986 * 17 16 15 19 19 C 1.39173 * 120.44698 * 5.42237 * 18 17 16 20 20 C 1.38448 * 118.40910 * 179.97438 * 19 18 17 21 21 C 1.38556 * 119.19667 * 359.97438 * 20 19 18 22 22 F 1.35102 * 119.59260 * 180.02562 * 21 20 19 23 23 N 1.31998 * 120.81643 * 359.97438 * 21 20 19 24 24 C 1.31923 * 121.74770 * 359.77184 * 23 21 20 25 25 C 1.53121 * 109.16108 * 57.65930 * 16 15 14 26 26 C 1.46854 * 111.00439 * 49.29036 * 13 12 11 27 27 H 0.97006 * 120.00380 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47220 * 59.99424 * 9 7 2 29 29 H 1.09000 * 109.47038 * 299.99321 * 9 7 2 30 30 H 1.08994 * 109.46772 * 60.00307 * 11 10 9 31 31 H 1.08998 * 109.46982 * 300.00227 * 11 10 9 32 32 H 1.08997 * 109.47473 * 305.87634 * 12 11 10 33 33 H 1.09010 * 109.46594 * 185.87883 * 12 11 10 34 34 H 1.09006 * 109.46519 * 65.82583 * 14 13 12 35 35 H 1.08995 * 109.45421 * 305.84613 * 14 13 12 36 36 H 1.09010 * 109.50348 * 180.88075 * 15 14 13 37 37 H 1.08996 * 109.50225 * 60.76339 * 15 14 13 38 38 H 1.08990 * 109.52869 * 297.68651 * 16 15 14 39 39 H 1.08001 * 120.79411 * 359.94695 * 19 18 17 40 40 H 1.07997 * 120.40727 * 179.97438 * 20 19 18 41 41 H 1.07992 * 119.64479 * 180.24682 * 24 23 21 42 42 H 1.09001 * 109.50145 * 62.27806 * 25 16 15 43 43 H 1.08994 * 109.50596 * 182.40299 * 25 16 15 44 44 H 1.09000 * 109.46041 * 294.18505 * 26 13 12 45 45 H 1.08997 * 109.45517 * 54.14308 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.5650 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 7 3.3942 -5.9021 1.2605 14 6 4.3113 -4.7553 1.2815 15 6 5.1731 -4.8127 2.5448 16 6 4.2654 -4.7867 3.7776 17 8 5.0614 -4.8974 4.9592 18 6 4.5342 -4.3960 6.1078 19 6 3.2309 -3.9084 6.1315 20 6 2.7365 -3.4080 7.3240 21 6 3.5490 -3.4095 8.4463 22 9 3.0745 -2.9236 9.6141 23 7 4.7807 -3.8808 8.3887 24 6 5.2852 -4.3701 7.2724 25 6 3.2881 -5.9634 3.7071 26 6 2.4809 -5.8727 2.4101 27 1 -0.4851 0.8401 0.0004 28 1 0.6245 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 0.9446 -4.9819 -0.8931 31 1 0.9451 -4.9830 0.8869 32 1 3.3306 -5.7863 -0.8362 33 1 2.1829 -6.9365 -0.1093 34 1 3.7356 -3.8297 1.2764 35 1 4.9539 -4.7882 0.4017 36 1 5.8428 -3.9529 2.5679 37 1 5.7594 -5.7315 2.5439 38 1 3.7083 -3.8502 3.8002 39 1 2.6200 -3.9197 5.2410 40 1 1.7297 -3.0212 7.3788 41 1 6.2959 -4.7505 7.2647 42 1 3.8449 -6.9004 3.7244 43 1 2.6111 -5.9259 4.5604 44 1 1.9138 -4.9420 2.3996 45 1 1.7941 -6.7169 2.3498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815100364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = -86.931591 kcal Electronic energy + Delta-G solvation = -27851.500853 eV Core-core repulsion = 23784.157750 eV Total energy + Delta-G solvation = -4067.343103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.08574 -40.99127 -39.43046 -38.07359 -36.32463 -33.33970 -32.72981 -32.58713 -30.91861 -30.15198 -28.49192 -26.89128 -24.85669 -24.04799 -23.36976 -22.84952 -22.34356 -21.33503 -19.67981 -18.52883 -18.04404 -17.61890 -16.57576 -16.27717 -16.12274 -15.80920 -15.56059 -15.16956 -14.98130 -14.87294 -14.38723 -14.34175 -14.05504 -13.98111 -13.54442 -13.41064 -13.11764 -13.05751 -12.58194 -12.42518 -12.30389 -11.97803 -11.61619 -11.55267 -11.20681 -11.05397 -10.97512 -10.86695 -10.69398 -10.60297 -10.43529 -10.22418 -10.12325 -10.00314 -9.25743 -8.96348 -8.52445 -8.34491 -8.00371 -6.22700 -4.25671 0.69845 0.82379 2.80070 3.23240 3.27386 3.30008 3.32528 3.44946 4.01430 4.20318 4.24566 4.37489 4.54344 4.61047 4.68765 4.76979 4.87159 4.96452 5.13992 5.15477 5.28914 5.38541 5.43559 5.49570 5.52144 5.56703 5.58958 5.70144 5.72472 5.78723 5.84682 5.96183 5.97281 6.07172 6.16432 6.20627 6.23124 6.55499 6.95002 6.99056 7.18149 7.22176 7.27920 7.39655 7.65494 8.01039 8.39978 8.86416 9.40064 10.88468 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.003737 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.315025 B = 7490.623574 C = 9498.293081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.391 6.391 11 C 0.021 3.979 12 C 0.059 3.941 13 N -0.533 5.533 14 C 0.048 3.952 15 C -0.107 4.107 16 C 0.081 3.919 17 O -0.298 6.298 18 C 0.082 3.918 19 C -0.139 4.139 20 C -0.146 4.146 21 C 0.259 3.741 22 F -0.116 7.116 23 N -0.478 5.478 24 C 0.104 3.896 25 C -0.138 4.138 26 C 0.052 3.948 27 H 0.265 0.735 28 H 0.004 0.996 29 H 0.002 0.998 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -12.598 9.547 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.058 4.058 12 C -0.069 4.069 13 N -0.257 5.257 14 C -0.080 4.080 15 C -0.145 4.145 16 C 0.025 3.975 17 O -0.210 6.210 18 C 0.033 3.967 19 C -0.165 4.165 20 C -0.167 4.167 21 C 0.106 3.894 22 F -0.095 7.095 23 N -0.192 5.192 24 C -0.054 4.054 25 C -0.176 4.176 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.172 0.828 40 H 0.169 0.831 41 H 0.192 0.808 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.269 -12.924 10.322 18.067 hybrid contribution -1.459 1.818 -0.641 2.417 sum 5.811 -11.106 9.682 15.838 Atomic orbital electron populations 1.69942 1.06130 1.27407 1.50072 1.24933 0.94943 0.99424 0.94966 0.86432 0.79395 0.81991 0.78912 1.19912 1.21065 1.20010 1.20975 0.93897 0.89298 1.51462 0.91657 1.20184 0.88771 0.83645 0.95251 1.87860 1.35287 1.12952 1.94981 1.23073 0.96319 0.86700 0.99703 1.22254 0.95394 0.96999 0.92296 1.62242 1.18879 1.42626 1.01942 1.22297 0.95125 0.94272 0.96278 1.21657 0.97847 1.03411 0.91580 1.22750 0.92799 0.99111 0.82808 1.86161 1.45106 1.74970 1.14737 1.20145 0.92663 0.95169 0.88723 1.21809 0.95303 0.99932 0.99424 1.21730 1.01973 1.01544 0.91504 1.18000 0.90022 0.99101 0.82286 1.91610 1.86772 1.85042 1.46081 1.67030 1.12584 1.10811 1.28773 1.21862 1.00275 0.98826 0.84464 1.22143 0.98181 0.99427 0.97809 1.22059 0.94485 1.01484 0.89619 0.92498 0.97809 0.98047 0.94146 0.94139 0.90041 0.89954 0.90030 0.90239 0.90581 0.90438 0.90427 0.82778 0.83072 0.80846 0.89950 0.91354 0.93341 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.37 9.43 -34.44 -0.32 -14.70 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.20 5.00 5.69 36.01 0.20 5.21 16 10 O -0.39 -8.32 7.48 -35.23 -0.26 -8.58 16 11 C 0.02 0.35 5.54 37.16 0.21 0.55 16 12 C 0.06 0.77 6.01 -3.83 -0.02 0.75 16 13 N -0.53 -6.96 4.86 -234.67 -1.14 -8.10 16 14 C 0.05 0.67 4.94 -3.83 -0.02 0.65 16 15 C -0.11 -1.29 5.75 -26.65 -0.15 -1.44 16 16 C 0.08 0.95 2.18 -26.61 -0.06 0.90 16 17 O -0.30 -3.48 9.82 -19.61 -0.19 -3.67 16 18 C 0.08 0.93 6.62 -39.10 -0.26 0.67 16 19 C -0.14 -1.52 8.35 -39.16 -0.33 -1.84 16 20 C -0.15 -1.57 10.08 -39.39 -0.40 -1.97 16 21 C 0.26 3.22 8.41 -17.36 -0.15 3.07 16 22 F -0.12 -1.47 17.29 2.25 0.04 -1.43 16 23 N -0.48 -6.13 10.37 -13.48 -0.14 -6.27 16 24 C 0.10 1.16 11.14 -17.38 -0.19 0.96 16 25 C -0.14 -1.48 5.39 -26.65 -0.14 -1.63 16 26 C 0.05 0.63 4.53 -3.83 -0.02 0.61 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.65 6.07 -51.93 -0.32 0.34 16 32 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 33 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.08 1.43 5.75 -51.93 -0.30 1.13 16 35 H 0.08 1.09 7.97 -51.93 -0.41 0.68 16 36 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.99 6.37 -51.93 -0.33 0.66 16 39 H 0.15 1.58 5.55 -52.49 -0.29 1.29 16 40 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.67 6.89 -51.93 -0.36 0.31 16 44 H 0.05 0.69 6.45 -51.93 -0.33 0.36 16 45 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -29.95 363.75 -8.77 -38.73 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.52 Total: -0.41 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.75 Total: -6.67 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.54 Total: -39.52 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.46 Total: -12.25 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.95 -8.77 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815100364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.206 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds