Wall clock time and date at job start Tue Mar 31 2020 13:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00162 * 2 1 4 4 H 1.48500 * 109.47513 * 240.00338 * 3 2 1 5 5 H 1.48502 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47443 * 120.00184 * 3 2 1 7 7 C 1.37879 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00012 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47224 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00171 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46892 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47441 * 65.88315 * 12 11 10 14 14 C 1.46850 * 110.99693 * 285.08391 * 13 12 11 15 15 C 1.53038 * 109.52236 * 185.83809 * 14 13 12 16 16 C 1.53115 * 109.27856 * 300.81651 * 15 14 13 17 17 O 1.42907 * 109.52242 * 177.55943 * 16 15 14 18 18 C 1.35960 * 116.99706 * 155.56986 * 17 16 15 19 19 C 1.39173 * 120.44698 * 5.42237 * 18 17 16 20 20 C 1.38448 * 118.40910 * 179.97438 * 19 18 17 21 21 C 1.38556 * 119.19667 * 359.97438 * 20 19 18 22 22 F 1.35102 * 119.59260 * 180.02562 * 21 20 19 23 23 N 1.31998 * 120.81643 * 359.97438 * 21 20 19 24 24 C 1.31923 * 121.74770 * 359.77184 * 23 21 20 25 25 C 1.53121 * 109.16108 * 57.65930 * 16 15 14 26 26 C 1.46854 * 111.00439 * 49.29036 * 13 12 11 27 27 H 0.97006 * 120.00380 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47220 * 59.99424 * 9 7 2 29 29 H 1.09000 * 109.47038 * 299.99321 * 9 7 2 30 30 H 1.08994 * 109.46772 * 60.00307 * 11 10 9 31 31 H 1.08998 * 109.46982 * 300.00227 * 11 10 9 32 32 H 1.08997 * 109.47473 * 305.87634 * 12 11 10 33 33 H 1.09010 * 109.46594 * 185.87883 * 12 11 10 34 34 H 1.09006 * 109.46519 * 65.82583 * 14 13 12 35 35 H 1.08995 * 109.45421 * 305.84613 * 14 13 12 36 36 H 1.09010 * 109.50348 * 180.88075 * 15 14 13 37 37 H 1.08996 * 109.50225 * 60.76339 * 15 14 13 38 38 H 1.08990 * 109.52869 * 297.68651 * 16 15 14 39 39 H 1.08001 * 120.79411 * 359.94695 * 19 18 17 40 40 H 1.07997 * 120.40727 * 179.97438 * 20 19 18 41 41 H 1.07992 * 119.64479 * 180.24682 * 24 23 21 42 42 H 1.09001 * 109.50145 * 62.27806 * 25 16 15 43 43 H 1.08994 * 109.50596 * 182.40299 * 25 16 15 44 44 H 1.09000 * 109.46041 * 294.18505 * 26 13 12 45 45 H 1.08997 * 109.45517 * 54.14308 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.5650 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 7 3.3942 -5.9021 1.2605 14 6 4.3113 -4.7553 1.2815 15 6 5.1731 -4.8127 2.5448 16 6 4.2654 -4.7867 3.7776 17 8 5.0614 -4.8974 4.9592 18 6 4.5342 -4.3960 6.1078 19 6 3.2309 -3.9084 6.1315 20 6 2.7365 -3.4080 7.3240 21 6 3.5490 -3.4095 8.4463 22 9 3.0745 -2.9236 9.6141 23 7 4.7807 -3.8808 8.3887 24 6 5.2852 -4.3701 7.2724 25 6 3.2881 -5.9634 3.7071 26 6 2.4809 -5.8727 2.4101 27 1 -0.4851 0.8401 0.0004 28 1 0.6245 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 0.9446 -4.9819 -0.8931 31 1 0.9451 -4.9830 0.8869 32 1 3.3306 -5.7863 -0.8362 33 1 2.1829 -6.9365 -0.1093 34 1 3.7356 -3.8297 1.2764 35 1 4.9539 -4.7882 0.4017 36 1 5.8428 -3.9529 2.5679 37 1 5.7594 -5.7315 2.5439 38 1 3.7083 -3.8502 3.8002 39 1 2.6200 -3.9197 5.2410 40 1 1.7297 -3.0212 7.3788 41 1 6.2959 -4.7505 7.2647 42 1 3.8449 -6.9004 3.7244 43 1 2.6111 -5.9259 4.5604 44 1 1.9138 -4.9420 2.3996 45 1 1.7941 -6.7169 2.3498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815100364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:52 Heat of formation + Delta-G solvation = -106.082132 kcal Electronic energy + Delta-G solvation = -27852.331283 eV Core-core repulsion = 23784.157750 eV Total energy + Delta-G solvation = -4068.173533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03721 -41.90252 -40.47459 -39.19554 -37.80530 -35.04328 -34.07125 -33.61388 -31.91162 -31.11833 -29.98911 -28.59397 -25.88059 -25.04019 -24.56107 -24.32455 -23.68495 -22.43627 -20.73537 -19.43863 -18.97385 -18.66379 -18.50193 -17.49189 -17.30683 -17.19769 -16.76918 -16.37753 -16.15936 -15.93180 -15.78342 -15.42503 -15.38322 -14.97525 -14.60058 -14.52853 -14.42987 -14.08058 -13.79444 -13.67580 -13.33366 -13.28612 -13.07644 -12.98538 -12.73040 -12.67717 -12.31235 -12.14715 -12.04917 -11.99507 -11.59884 -11.41143 -11.28381 -11.01595 -10.90493 -10.86885 -10.23251 -9.42824 -9.18820 -8.34855 -6.46854 -0.16885 -0.08166 1.37813 1.40584 1.49090 1.87183 2.30610 2.43527 2.56094 2.91020 2.99681 3.25684 3.36472 3.49726 3.63461 3.68349 3.83804 3.97039 4.01517 4.15260 4.18391 4.26358 4.42904 4.44436 4.52738 4.59575 4.63228 4.66961 4.70899 4.75409 4.81807 4.86719 4.92422 4.95540 5.03501 5.10693 5.15422 5.18152 5.28475 5.41307 5.51941 5.93514 6.07078 6.09473 6.13691 6.50292 6.50452 6.78696 7.25353 8.76824 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.003737 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.315025 B = 7490.623574 C = 9498.293081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.212 3.788 10 O -0.394 6.394 11 C 0.013 3.987 12 C 0.066 3.934 13 N -0.526 5.526 14 C 0.052 3.948 15 C -0.101 4.101 16 C 0.083 3.917 17 O -0.297 6.297 18 C 0.077 3.923 19 C -0.141 4.141 20 C -0.142 4.142 21 C 0.243 3.757 22 F -0.122 7.122 23 N -0.497 5.497 24 C 0.106 3.894 25 C -0.129 4.129 26 C 0.052 3.948 27 H 0.270 0.730 28 H -0.020 1.020 29 H -0.018 1.018 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.197 0.803 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.022 0.978 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -13.363 9.750 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.188 4.188 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.137 3.863 10 O -0.314 6.314 11 C -0.066 4.066 12 C -0.062 4.062 13 N -0.249 5.249 14 C -0.076 4.076 15 C -0.139 4.139 16 C 0.027 3.973 17 O -0.209 6.209 18 C 0.028 3.972 19 C -0.167 4.167 20 C -0.163 4.163 21 C 0.090 3.910 22 F -0.101 7.101 23 N -0.212 5.212 24 C -0.052 4.052 25 C -0.166 4.166 26 C -0.076 4.076 27 H 0.079 0.921 28 H -0.003 1.003 29 H -0.001 1.001 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.177 0.823 40 H 0.189 0.811 41 H 0.214 0.786 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.041 0.959 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.271 -13.714 10.530 19.167 hybrid contribution -1.788 1.968 -0.717 2.754 sum 6.483 -11.747 9.813 16.623 Atomic orbital electron populations 1.70053 1.07711 1.28598 1.50517 1.25860 0.95807 1.03112 0.94039 0.85362 0.78227 0.77289 0.79378 1.18998 1.20250 1.19120 1.21319 0.94026 0.90687 1.52068 0.91886 1.19738 0.88606 0.84922 0.93025 1.87870 1.34600 1.13958 1.94955 1.23423 0.97888 0.85345 0.99925 1.22341 0.94418 0.96988 0.92484 1.62325 1.18824 1.41576 1.02209 1.22178 0.95103 0.92837 0.97454 1.21575 0.97542 1.04038 0.90725 1.22682 0.92815 0.98984 0.82860 1.86143 1.45074 1.75025 1.14672 1.20236 0.92902 0.95339 0.88717 1.21926 0.95370 0.99805 0.99642 1.21896 1.02656 1.00930 0.90790 1.18219 0.90399 0.99779 0.82579 1.91590 1.86850 1.85204 1.46453 1.67036 1.13020 1.11519 1.29641 1.22210 1.01077 0.98106 0.83839 1.22076 0.97989 0.99165 0.97415 1.22105 0.94609 1.00950 0.89910 0.92138 1.00250 1.00069 0.94020 0.93780 0.90059 0.86623 0.93895 0.90205 0.90587 0.89181 0.91888 0.82326 0.81143 0.78596 0.89113 0.90195 0.95944 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.76 9.43 25.60 0.24 -30.52 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.25 5.69 71.24 0.41 11.65 16 10 O -0.39 -17.20 7.48 -148.98 -1.11 -18.31 16 11 C 0.01 0.41 5.54 71.98 0.40 0.81 16 12 C 0.07 1.62 6.01 86.30 0.52 2.14 16 13 N -0.53 -12.90 4.86 -896.35 -4.36 -17.26 16 14 C 0.05 1.44 4.94 86.33 0.43 1.86 16 15 C -0.10 -2.31 5.75 30.65 0.18 -2.13 16 16 C 0.08 1.85 2.18 30.67 0.07 1.92 16 17 O -0.30 -6.46 9.82 -93.09 -0.91 -7.37 16 18 C 0.08 1.64 6.62 22.58 0.15 1.79 16 19 C -0.14 -2.95 8.35 22.54 0.19 -2.76 16 20 C -0.14 -2.91 10.08 22.40 0.23 -2.69 16 21 C 0.24 5.88 8.41 84.74 0.71 6.59 16 22 F -0.12 -3.04 17.29 44.97 0.78 -2.27 16 23 N -0.50 -12.35 10.37 -196.57 -2.04 -14.39 16 24 C 0.11 2.21 11.14 84.76 0.94 3.16 16 25 C -0.13 -2.53 5.39 30.65 0.17 -2.37 16 26 C 0.05 1.19 4.53 86.32 0.39 1.58 16 27 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 28 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 29 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.43 6.07 -2.39 -0.01 1.41 16 32 H 0.08 2.04 7.89 -2.39 -0.02 2.02 16 33 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.04 1.54 5.75 -2.38 -0.01 1.53 16 35 H 0.08 2.15 7.97 -2.39 -0.02 2.13 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.60 6.37 -2.39 -0.02 1.59 16 39 H 0.16 3.14 5.55 -2.91 -0.02 3.13 16 40 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 1.40 6.89 -2.39 -0.02 1.39 16 44 H 0.02 0.64 6.45 -2.39 -0.02 0.62 16 45 H 0.10 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -64.79 363.75 1.13 -63.66 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.00 Total: 12.85 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.47 Total: -7.91 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -6.11 Total: -85.74 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -2.03 Total: -25.68 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -64.79 1.13 -63.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815100364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.426 kcal (2) G-P(sol) polarization free energy of solvation -64.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds