Wall clock time and date at job start Tue Mar 31 2020 14:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38083 * 120.00275 * 2 1 4 4 C 1.38850 * 120.00713 * 179.70422 * 3 2 1 5 5 N 1.40075 * 119.99718 * 180.27359 * 4 3 2 6 6 C 1.34781 * 119.99824 * 213.91150 * 5 4 3 7 7 O 1.21568 * 119.99594 * 5.14635 * 6 5 4 8 8 C 1.47844 * 119.99886 * 185.14037 * 6 5 4 9 9 C 1.39936 * 120.03026 * 359.72717 * 8 6 5 10 10 C 1.38327 * 120.35600 * 179.74051 * 9 8 6 11 11 C 1.37746 * 120.41563 * 0.55783 * 10 9 8 12 12 C 1.40750 * 120.04311 * 359.69973 * 11 10 9 13 13 C 1.41434 * 120.17996 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00041 * 331.76397 * 13 12 11 15 15 C 1.39930 * 120.00278 * 151.76070 * 13 12 11 16 16 N 1.30827 * 119.99981 * 348.99043 * 15 13 12 17 17 Si 1.86800 * 120.00390 * 168.99271 * 15 13 12 18 18 H 1.48510 * 109.47041 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47558 * 119.99728 * 17 15 13 20 20 H 1.48503 * 109.47269 * 240.00279 * 17 15 13 21 21 C 1.39012 * 120.02732 * 180.02562 * 8 6 5 22 22 C 1.38889 * 120.00182 * 0.54807 * 4 3 2 23 23 C 1.38043 * 120.00370 * 359.45077 * 22 4 3 24 24 C 1.38874 * 120.00844 * 179.97438 * 2 1 3 25 25 N 1.39895 * 119.99535 * 359.97438 * 24 2 1 26 26 C 1.46899 * 110.99861 * 120.02058 * 25 24 2 27 27 C 1.46900 * 110.99836 * 243.97125 * 25 24 2 28 28 H 1.09010 * 109.47001 * 270.01906 * 1 2 3 29 29 H 1.08996 * 109.47364 * 30.02126 * 1 2 3 30 30 H 1.09008 * 109.46957 * 150.02690 * 1 2 3 31 31 H 1.08005 * 119.98955 * 359.97438 * 3 2 1 32 32 H 0.96995 * 120.00006 * 33.92016 * 5 4 3 33 33 H 1.07998 * 119.81885 * 359.97438 * 9 8 6 34 34 H 1.08003 * 119.78791 * 180.27889 * 10 9 8 35 35 H 1.07999 * 119.97858 * 179.71486 * 11 10 9 36 36 H 0.97006 * 120.00095 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.19986 * 359.96015 * 21 8 6 38 38 H 1.08001 * 119.99982 * 179.71806 * 22 4 3 39 39 H 1.07993 * 119.99978 * 180.29525 * 23 22 4 40 40 H 1.09004 * 109.47375 * 59.99610 * 26 25 24 41 41 H 1.09005 * 109.47319 * 179.97438 * 26 25 24 42 42 H 1.08993 * 109.47300 * 299.99869 * 26 25 24 43 43 H 1.08998 * 109.46800 * 60.00678 * 27 25 24 44 44 H 1.09000 * 109.46820 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.47338 * 300.00621 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5859 1.1959 0.0062 5 7 4.2861 2.4091 0.0120 6 6 5.4648 2.5099 -0.6337 7 8 5.8753 1.5785 -1.2985 8 6 6.2585 3.7532 -0.5337 9 6 5.7838 4.8278 0.2266 10 6 6.5234 5.9923 0.3292 11 6 7.7298 6.1121 -0.3248 12 6 8.2210 5.0439 -1.0985 13 6 9.4596 5.1636 -1.7708 14 1 9.8111 6.1348 -2.0865 15 6 10.2298 4.0237 -2.0267 16 7 9.9193 2.8844 -1.4636 17 14 11.7015 4.1287 -3.1724 18 1 11.8389 5.5191 -3.6757 19 1 12.9319 3.7462 -2.4342 20 1 11.5040 3.2044 -4.3179 21 6 7.4741 3.8581 -1.1999 22 6 4.2805 -0.0068 0.0009 23 6 3.5905 -1.2024 0.0009 24 6 2.2015 -1.2026 0.0005 25 7 1.5021 -2.4142 0.0016 26 6 1.8327 -3.2139 -1.1854 27 6 1.7606 -3.1701 1.2344 28 1 -0.3633 0.0003 1.0278 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6572 2.1311 -0.0004 32 1 3.9227 3.1765 0.4808 33 1 4.8367 4.7462 0.7391 34 1 6.1504 6.8143 0.9221 35 1 8.2992 7.0262 -0.2435 36 1 10.4530 2.0941 -1.6413 37 1 7.8424 3.0328 -1.7912 38 1 5.3605 -0.0066 0.0011 39 1 4.1307 -2.1376 0.0016 40 1 2.9016 -3.4273 -1.1936 41 1 1.2757 -4.1505 -1.1592 42 1 1.5665 -2.6575 -2.0840 43 1 1.4418 -2.5818 2.0948 44 1 1.2051 -4.1076 1.2089 45 1 2.8269 -3.3819 1.3139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915856424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:56 Heat of formation + Delta-G solvation = 17.384878 kcal Electronic energy + Delta-G solvation = -26198.509313 eV Core-core repulsion = 22566.458937 eV Total energy + Delta-G solvation = -3632.050377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.44251 -39.20489 -37.34274 -36.39515 -34.16369 -33.69149 -32.39528 -30.44808 -29.52843 -28.76511 -27.73976 -26.84624 -25.43172 -24.44717 -22.91192 -21.85385 -21.09925 -20.53761 -19.40565 -17.99005 -17.11566 -16.64534 -16.04843 -15.67120 -15.20766 -15.12007 -14.73497 -14.48815 -14.21089 -13.94337 -13.89359 -13.39626 -13.27620 -12.98007 -12.89014 -12.64434 -12.59134 -12.58549 -12.15148 -12.02416 -11.85808 -11.69868 -11.61092 -11.22039 -11.16702 -11.13755 -10.79695 -10.54516 -10.09232 -9.90378 -9.77242 -9.32766 -9.18132 -8.65379 -8.62284 -7.87642 -7.64434 -7.56186 -6.80410 -4.49379 1.27807 1.48196 2.10977 2.74593 3.05498 3.08523 3.10317 3.44409 3.59421 3.78290 3.88627 3.94099 4.59669 4.88898 4.95639 4.98307 5.16626 5.29154 5.31057 5.31451 5.41139 5.50924 5.56246 5.64630 5.67695 5.71413 5.73067 5.74684 5.90322 5.98018 6.05194 6.17628 6.32551 6.50836 6.59012 6.64924 6.70768 6.72472 6.88575 6.92644 7.02288 7.15694 7.29232 7.40234 7.59494 7.64103 7.81692 7.94597 8.10318 8.43533 8.70040 8.75319 8.77615 10.13406 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002756 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.252954 B =10157.173574 C =11368.663665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.044 4.044 3 C -0.151 4.151 4 C 0.168 3.832 5 N -0.680 5.680 6 C 0.564 3.436 7 O -0.524 6.524 8 C -0.133 4.133 9 C -0.213 4.213 10 C -0.099 4.099 11 C -0.205 4.205 12 C 0.097 3.903 13 C -0.458 4.458 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.792 5.792 17 Si 0.913 3.087 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.271 1.271 21 C -0.082 4.082 22 C -0.118 4.118 23 C -0.123 4.123 24 C 0.052 3.948 25 N -0.503 5.503 26 C 0.026 3.974 27 C 0.028 3.972 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.410 0.590 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.283 0.717 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 -7.981 4.020 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.045 4.045 3 C -0.172 4.172 4 C 0.073 3.927 5 N -0.326 5.326 6 C 0.357 3.643 7 O -0.400 6.400 8 C -0.136 4.136 9 C -0.233 4.233 10 C -0.118 4.118 11 C -0.225 4.225 12 C 0.094 3.906 13 C -0.488 4.488 14 H 0.100 0.900 15 C -0.148 4.148 16 N -0.417 5.417 17 Si 0.738 3.262 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.042 4.042 25 N -0.224 5.224 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.247 0.753 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.743 -8.761 3.540 17.511 hybrid contribution 1.498 0.168 -0.100 1.511 sum -13.245 -8.593 3.440 16.159 Atomic orbital electron populations 1.20613 0.90607 1.02593 1.02006 1.19468 0.96099 0.90717 0.98229 1.20730 0.92001 0.98129 1.06369 1.17840 0.90732 0.86209 0.97968 1.43736 1.22413 1.12101 1.54307 1.19020 0.79461 0.88586 0.77251 1.90722 1.69391 1.40358 1.39524 1.19389 0.97178 0.92451 1.04587 1.20367 1.00597 0.95036 1.07349 1.20449 0.95412 0.96249 0.99643 1.21177 0.98042 1.00449 1.02786 1.17630 0.92408 0.90722 0.89818 1.19622 1.02236 0.94499 1.32427 0.90034 1.25960 0.99340 0.94700 0.94775 1.69757 1.36833 1.00945 1.34123 0.86171 0.80213 0.79666 0.80170 1.18391 1.19893 1.19615 1.21728 0.90633 0.99658 0.98237 1.21086 1.01199 0.90555 1.01104 1.21393 0.94208 0.97952 1.00783 1.18507 0.90025 0.90512 1.05181 1.59636 1.56502 1.03226 1.03018 1.22455 0.99287 0.97536 0.92816 1.22429 0.99548 0.98020 0.91872 0.91623 0.92319 0.90474 0.85537 0.75272 0.89141 0.88682 0.88416 0.90544 0.84466 0.84584 0.86376 0.95099 0.91221 0.91162 0.91249 0.91238 0.95197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.76 36.00 0.35 -0.65 16 2 C -0.04 -0.55 5.89 -104.45 -0.62 -1.17 16 3 C -0.15 -2.03 9.61 -39.41 -0.38 -2.41 16 4 C 0.17 2.71 6.28 -83.62 -0.52 2.19 16 5 N -0.68 -11.57 5.29 -10.67 -0.06 -11.62 16 6 C 0.56 12.15 7.51 -12.33 -0.09 12.06 16 7 O -0.52 -12.78 14.03 5.31 0.07 -12.71 16 8 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 9 C -0.21 -4.33 9.55 -38.91 -0.37 -4.70 16 10 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 11 C -0.20 -4.73 9.78 -38.81 -0.38 -5.11 16 12 C 0.10 2.51 5.55 -106.87 -0.59 1.91 16 13 C -0.46 -11.84 9.06 -37.73 -0.34 -12.19 16 14 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 15 C 0.07 1.75 5.25 -17.35 -0.09 1.66 16 16 N -0.79 -20.70 10.82 55.55 0.60 -20.10 16 17 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.08 -2.15 8.21 -38.44 -0.32 -2.47 16 22 C -0.12 -2.00 8.65 -39.41 -0.34 -2.34 16 23 C -0.12 -1.76 8.57 -39.41 -0.34 -2.10 16 24 C 0.05 0.68 4.72 -83.69 -0.39 0.28 16 25 N -0.50 -5.45 3.93 -186.80 -0.73 -6.19 16 26 C 0.03 0.25 9.35 60.06 0.56 0.81 16 27 C 0.03 0.26 9.38 60.06 0.56 0.82 16 28 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.08 0.77 7.45 -51.92 -0.39 0.38 16 31 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.41 5.82 6.85 -40.82 -0.28 5.54 16 33 H 0.09 1.49 6.39 -52.49 -0.34 1.16 16 34 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 37 H 0.14 3.88 5.77 -52.49 -0.30 3.58 16 38 H 0.14 2.61 6.43 -52.49 -0.34 2.27 16 39 H 0.12 1.53 7.01 -52.49 -0.37 1.17 16 40 H 0.03 0.31 7.12 -51.93 -0.37 -0.06 16 41 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.03 0.28 7.34 -51.93 -0.38 -0.10 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -29.10 371.41 -9.97 -39.07 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.11 Total: 11.86 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -4.32 Total: -19.51 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.19 Total: -37.91 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.71 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.10 -9.97 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915856424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.455 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds