Wall clock time and date at job start Tue Mar 31 2020 13:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36287 * 119.94074 * 2 1 4 4 C 1.38906 * 121.17993 * 179.97438 * 3 2 1 5 5 C 1.38715 * 120.65049 * 0.02646 * 4 3 2 6 6 C 1.47455 * 120.37784 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00202 * 173.99657 * 6 5 4 8 8 N 1.34779 * 119.99877 * 354.00176 * 6 5 4 9 9 C 1.46503 * 119.99624 * 179.97438 * 8 6 5 10 10 H 1.08991 * 110.88976 * 31.11931 * 9 8 6 11 11 C 1.55165 * 111.00265 * 155.00000 * 9 8 6 12 12 C 1.54316 * 102.94186 * 153.57452 * 11 9 8 13 13 N 1.47027 * 107.27425 * 337.80477 * 12 11 9 14 14 C 1.36936 * 125.64916 * 178.96193 * 13 12 11 15 15 H 1.08002 * 119.99848 * 179.97438 * 14 13 12 16 16 C 1.38808 * 119.99834 * 359.97438 * 14 13 12 17 17 N 1.31623 * 120.00504 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99757 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46965 * 90.00448 * 18 16 14 20 20 H 1.48501 * 109.46924 * 210.00189 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00118 * 18 16 14 22 22 C 1.47421 * 108.70158 * 358.94101 * 13 12 11 23 23 C 1.41748 * 119.24315 * 359.97438 * 5 4 3 24 24 C 1.40135 * 121.25431 * 179.97438 * 23 5 4 25 25 C 1.36256 * 119.68935 * 180.02562 * 24 23 5 26 26 C 1.39298 * 120.93368 * 0.02562 * 25 24 23 27 27 C 1.36139 * 120.94638 * 0.25096 * 26 25 24 28 28 C 1.40559 * 119.93764 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47403 * 269.97884 * 1 2 3 30 30 H 1.08994 * 109.47159 * 29.98263 * 1 2 3 31 31 H 1.09005 * 109.47130 * 149.97886 * 1 2 3 32 32 H 1.08001 * 119.40523 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.66949 * 180.02562 * 4 3 2 34 34 H 0.96997 * 120.00358 * 359.97438 * 8 6 5 35 35 H 1.08996 * 110.71853 * 271.93878 * 11 9 8 36 36 H 1.08998 * 110.71937 * 35.03571 * 11 9 8 37 37 H 1.09001 * 109.88651 * 97.22165 * 12 11 9 38 38 H 1.09005 * 109.88495 * 218.38649 * 12 11 9 39 39 H 0.97003 * 119.99987 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.37107 * 265.29014 * 22 13 12 41 41 H 1.09003 * 110.36938 * 142.96402 * 22 13 12 42 42 H 1.08010 * 120.15677 * 359.97438 * 24 23 5 43 43 H 1.08003 * 119.53209 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.52573 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.16865 * 179.72699 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1810 0.0000 4 6 3.5759 1.2110 0.0005 5 6 4.3087 0.0332 0.0005 6 6 5.7827 0.0721 0.0005 7 8 6.4182 -0.9587 0.1107 8 7 6.4257 1.2504 -0.1214 9 6 7.8903 1.2890 -0.1209 10 1 8.3033 0.3775 -0.5528 11 6 8.4137 2.5448 -0.8670 12 6 9.7887 2.7888 -0.2103 13 7 9.7652 2.1368 1.1073 14 6 10.8030 2.1036 2.0000 15 1 10.6853 1.5968 2.9464 16 6 12.0064 2.7213 1.6885 17 7 12.1498 3.3395 0.5353 18 14 13.4220 2.6766 2.9066 19 1 14.2576 1.4759 2.6505 20 1 14.2502 3.8990 2.7481 21 1 12.8836 2.6193 4.2893 22 6 8.4389 1.5253 1.3085 23 6 3.6244 -1.2081 0.0005 24 6 4.3225 -2.4232 0.0000 25 6 3.6323 -3.5980 -0.0005 26 6 2.2394 -3.6102 -0.0011 27 6 1.5291 -2.4488 -0.0062 28 6 2.2084 -1.2180 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6365 2.1101 0.0004 33 1 4.0901 2.1608 0.0009 34 1 5.9189 2.0727 -0.2096 35 1 8.5255 2.3418 -1.9320 36 1 7.7500 3.3941 -0.7052 37 1 10.5760 2.3529 -0.8255 38 1 9.9581 3.8590 -0.0914 39 1 12.9910 3.7708 0.3175 40 1 7.7871 2.2049 1.8575 41 1 8.5345 0.5782 1.8395 42 1 5.4026 -2.4284 -0.0009 43 1 4.1729 -4.5330 -0.0014 44 1 1.7154 -4.5545 -0.0019 45 1 0.4494 -2.4729 -0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015762302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:37 Heat of formation + Delta-G solvation = 39.712132 kcal Electronic energy + Delta-G solvation = -26452.028813 eV Core-core repulsion = 22820.946619 eV Total energy + Delta-G solvation = -3631.082194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97116 -39.28267 -37.23380 -36.78879 -34.14938 -33.83513 -31.90995 -30.49521 -30.11234 -29.19919 -27.99299 -26.67224 -24.49310 -23.65554 -23.12067 -22.22126 -20.50733 -20.31669 -19.90396 -17.85182 -17.47780 -16.94021 -16.76872 -15.95410 -15.27103 -14.91019 -14.77218 -14.62273 -14.50847 -14.28138 -13.99470 -13.62544 -13.55631 -13.06582 -12.92862 -12.73978 -12.44507 -12.36691 -12.22731 -12.09269 -11.81449 -11.42510 -11.35557 -11.11839 -11.01244 -10.89057 -10.75912 -10.32555 -10.09211 -9.91994 -9.87331 -9.72119 -9.40528 -8.82078 -8.80248 -8.59509 -7.97373 -6.83880 -5.71064 -3.04611 0.09655 0.84108 1.69074 2.58840 3.23543 3.24623 3.42120 3.47071 3.48883 4.00776 4.36824 4.47425 4.51783 4.56557 4.72338 4.77340 4.86638 5.04925 5.16466 5.23443 5.27749 5.28446 5.31297 5.43304 5.45687 5.58853 5.68383 5.73549 5.74773 5.79282 5.91840 6.01473 6.03094 6.13825 6.20070 6.30904 6.40859 6.42548 6.48652 6.57528 6.66448 6.71243 6.88478 6.98023 7.53476 7.57492 7.65961 7.81737 8.24656 8.36083 9.22192 9.82031 10.46802 11.40892 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.002539 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.751330 B =11024.516746 C =11656.142618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.131 4.131 4 C -0.072 4.072 5 C -0.122 4.122 6 C 0.559 3.441 7 O -0.532 6.532 8 N -0.708 5.708 9 C 0.126 3.874 10 H 0.099 0.901 11 C -0.150 4.150 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.129 3.871 23 C -0.012 4.012 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.020 0.980 41 H 0.043 0.957 42 H 0.172 0.828 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.543 -6.703 -4.284 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.050 4.050 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.126 4.126 6 C 0.346 3.654 7 O -0.412 6.412 8 N -0.358 5.358 9 C 0.021 3.979 10 H 0.117 0.883 11 C -0.189 4.189 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.354 4.354 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.002 3.998 23 C -0.012 4.012 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.135 4.135 28 C -0.057 4.057 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.189 0.811 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.827 -7.330 -4.193 26.224 hybrid contribution 0.484 0.519 0.591 0.923 sum -24.343 -6.811 -3.603 25.533 Atomic orbital electron populations 1.20898 0.90751 1.03221 1.02791 1.19923 0.96118 0.92303 0.96674 1.20611 0.93787 0.97878 1.02586 1.21343 0.94261 0.97301 0.96186 1.19980 0.92997 0.93551 1.06026 1.18089 0.86757 0.83956 0.76550 1.90565 1.68003 1.32339 1.50256 1.45957 1.08062 1.08459 1.73343 1.22375 0.77057 1.00001 0.98431 0.88276 1.23191 1.00401 0.95808 0.99451 1.21148 0.90003 0.97751 0.85667 1.44392 1.08988 1.62677 1.16999 1.19074 0.90097 1.29469 0.96809 0.90372 1.24804 0.97895 1.00309 0.97476 1.69947 1.25094 1.40285 1.21836 0.86094 0.82244 0.77076 0.80211 1.21546 1.21673 1.20686 1.21821 0.88122 0.96410 0.93447 1.17872 0.91919 0.92946 0.98501 1.22306 1.03806 0.90727 0.95763 1.21057 0.94074 0.98667 1.00191 1.20926 0.94516 0.98141 0.99583 1.20995 0.99640 0.91473 1.01398 1.17908 0.92239 0.93527 1.02058 0.90580 0.91017 0.91024 0.85322 0.85288 0.76824 0.91547 0.92063 0.93186 0.93542 0.93730 0.96277 0.93819 0.81135 0.85887 0.86121 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.52 36.00 0.34 -0.38 16 2 C -0.05 -0.46 5.89 -104.45 -0.62 -1.08 16 3 C -0.13 -1.17 9.56 -40.04 -0.38 -1.55 16 4 C -0.07 -0.74 9.51 -39.16 -0.37 -1.12 16 5 C -0.12 -1.63 5.90 -104.63 -0.62 -2.25 16 6 C 0.56 8.77 7.72 -12.51 -0.10 8.68 16 7 O -0.53 -9.97 13.03 5.28 0.07 -9.90 16 8 N -0.71 -10.36 5.15 -52.78 -0.27 -10.63 16 9 C 0.13 2.29 3.42 -65.77 -0.23 2.07 16 10 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 11 C -0.15 -2.67 6.60 -24.90 -0.16 -2.84 16 12 C 0.18 4.30 5.37 -3.07 -0.02 4.29 16 13 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16 14 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.13 2.80 6.93 -2.53 -0.02 2.79 16 23 C -0.01 -0.16 5.76 -106.56 -0.61 -0.77 16 24 C -0.11 -1.51 9.21 -39.58 -0.36 -1.87 16 25 C -0.12 -1.37 9.95 -39.90 -0.40 -1.77 16 26 C -0.11 -1.09 9.95 -39.94 -0.40 -1.48 16 27 C -0.12 -1.12 9.27 -39.45 -0.37 -1.48 16 28 C -0.06 -0.65 5.74 -106.86 -0.61 -1.26 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.07 0.37 6.38 -51.93 -0.33 0.04 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 1.03 6.42 -52.48 -0.34 0.70 16 34 H 0.40 4.58 6.63 -40.82 -0.27 4.31 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 37 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 38 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.17 2.69 4.87 -52.58 -0.26 2.43 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.13 0.86 6.33 -52.49 -0.33 0.53 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -33.16 360.86 -10.99 -44.16 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.03 Total: 3.42 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -5.17 Total: -6.97 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.28 Total: -53.50 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.16 -10.99 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015762302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.868 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds