Wall clock time and date at job start Tue Mar 31 2020 13:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36287 * 119.94074 * 2 1 4 4 C 1.38906 * 121.17993 * 179.97438 * 3 2 1 5 5 C 1.38715 * 120.65049 * 0.02646 * 4 3 2 6 6 C 1.47455 * 120.37784 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00202 * 173.99657 * 6 5 4 8 8 N 1.34779 * 119.99877 * 354.00176 * 6 5 4 9 9 C 1.46503 * 119.99624 * 179.97438 * 8 6 5 10 10 H 1.08991 * 110.88976 * 31.11931 * 9 8 6 11 11 C 1.55165 * 111.00265 * 155.00000 * 9 8 6 12 12 C 1.54316 * 102.94186 * 153.57452 * 11 9 8 13 13 N 1.47027 * 107.27425 * 337.80477 * 12 11 9 14 14 C 1.36936 * 125.64916 * 178.96193 * 13 12 11 15 15 H 1.08002 * 119.99848 * 179.97438 * 14 13 12 16 16 C 1.38808 * 119.99834 * 359.97438 * 14 13 12 17 17 N 1.31623 * 120.00504 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99757 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46965 * 90.00448 * 18 16 14 20 20 H 1.48501 * 109.46924 * 210.00189 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00118 * 18 16 14 22 22 C 1.47421 * 108.70158 * 358.94101 * 13 12 11 23 23 C 1.41748 * 119.24315 * 359.97438 * 5 4 3 24 24 C 1.40135 * 121.25431 * 179.97438 * 23 5 4 25 25 C 1.36256 * 119.68935 * 180.02562 * 24 23 5 26 26 C 1.39298 * 120.93368 * 0.02562 * 25 24 23 27 27 C 1.36139 * 120.94638 * 0.25096 * 26 25 24 28 28 C 1.40559 * 119.93764 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47403 * 269.97884 * 1 2 3 30 30 H 1.08994 * 109.47159 * 29.98263 * 1 2 3 31 31 H 1.09005 * 109.47130 * 149.97886 * 1 2 3 32 32 H 1.08001 * 119.40523 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.66949 * 180.02562 * 4 3 2 34 34 H 0.96997 * 120.00358 * 359.97438 * 8 6 5 35 35 H 1.08996 * 110.71853 * 271.93878 * 11 9 8 36 36 H 1.08998 * 110.71937 * 35.03571 * 11 9 8 37 37 H 1.09001 * 109.88651 * 97.22165 * 12 11 9 38 38 H 1.09005 * 109.88495 * 218.38649 * 12 11 9 39 39 H 0.97003 * 119.99987 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.37107 * 265.29014 * 22 13 12 41 41 H 1.09003 * 110.36938 * 142.96402 * 22 13 12 42 42 H 1.08010 * 120.15677 * 359.97438 * 24 23 5 43 43 H 1.08003 * 119.53209 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.52573 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.16865 * 179.72699 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1810 0.0000 4 6 3.5759 1.2110 0.0005 5 6 4.3087 0.0332 0.0005 6 6 5.7827 0.0721 0.0005 7 8 6.4182 -0.9587 0.1107 8 7 6.4257 1.2504 -0.1214 9 6 7.8903 1.2890 -0.1209 10 1 8.3033 0.3775 -0.5528 11 6 8.4137 2.5448 -0.8670 12 6 9.7887 2.7888 -0.2103 13 7 9.7652 2.1368 1.1073 14 6 10.8030 2.1036 2.0000 15 1 10.6853 1.5968 2.9464 16 6 12.0064 2.7213 1.6885 17 7 12.1498 3.3395 0.5353 18 14 13.4220 2.6766 2.9066 19 1 14.2576 1.4759 2.6505 20 1 14.2502 3.8990 2.7481 21 1 12.8836 2.6193 4.2893 22 6 8.4389 1.5253 1.3085 23 6 3.6244 -1.2081 0.0005 24 6 4.3225 -2.4232 0.0000 25 6 3.6323 -3.5980 -0.0005 26 6 2.2394 -3.6102 -0.0011 27 6 1.5291 -2.4488 -0.0062 28 6 2.2084 -1.2180 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6365 2.1101 0.0004 33 1 4.0901 2.1608 0.0009 34 1 5.9189 2.0727 -0.2096 35 1 8.5255 2.3418 -1.9320 36 1 7.7500 3.3941 -0.7052 37 1 10.5760 2.3529 -0.8255 38 1 9.9581 3.8590 -0.0914 39 1 12.9910 3.7708 0.3175 40 1 7.7871 2.2049 1.8575 41 1 8.5345 0.5782 1.8395 42 1 5.4026 -2.4284 -0.0009 43 1 4.1729 -4.5330 -0.0014 44 1 1.7154 -4.5545 -0.0019 45 1 0.4494 -2.4729 -0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015762302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:36 Heat of formation + Delta-G solvation = 20.166566 kcal Electronic energy + Delta-G solvation = -26452.876373 eV Core-core repulsion = 22820.946619 eV Total energy + Delta-G solvation = -3631.929754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89002 -40.47550 -38.87914 -37.56773 -35.70092 -34.72196 -33.73609 -31.32956 -31.16033 -30.74359 -29.24871 -27.95738 -26.38474 -24.48373 -23.92936 -23.30371 -22.13719 -21.80268 -21.23310 -19.13636 -18.65007 -18.19520 -17.80977 -17.27811 -16.69962 -16.20160 -16.09840 -15.88930 -15.75815 -15.35515 -14.97973 -14.77961 -14.38124 -14.30710 -14.14508 -13.93165 -13.77959 -13.70855 -13.51561 -12.98052 -12.95641 -12.81757 -12.76547 -12.45339 -12.28754 -12.12159 -12.06303 -12.04823 -11.85105 -11.81982 -11.60409 -10.74366 -10.69254 -10.59655 -10.17931 -9.61586 -8.94937 -8.78475 -7.88543 -5.24912 -0.73493 0.05070 0.80428 1.44174 1.46683 1.55201 1.72457 2.01295 2.23501 2.48564 3.15288 3.29992 3.52839 3.63989 3.74523 3.81185 3.86593 3.93226 4.01999 4.09112 4.13824 4.17600 4.39459 4.40831 4.54565 4.57569 4.66891 4.69076 4.74026 4.83891 4.87490 4.93963 4.97030 5.04194 5.12552 5.21295 5.26714 5.31667 5.39530 5.40833 5.50175 5.61563 5.66239 5.68468 5.71458 5.87606 6.07467 6.16239 6.50735 7.06957 7.19367 7.71960 8.35442 9.21594 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.002539 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.751330 B =11024.516746 C =11656.142618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 C -0.140 4.140 4 C -0.054 4.054 5 C -0.162 4.162 6 C 0.556 3.444 7 O -0.573 6.573 8 N -0.695 5.695 9 C 0.146 3.854 10 H 0.076 0.924 11 C -0.128 4.128 12 C 0.185 3.815 13 N -0.625 5.625 14 C -0.248 4.248 15 H 0.077 0.923 16 C -0.062 4.062 17 N -0.949 5.949 18 Si 0.980 3.020 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.031 4.031 24 C -0.151 4.151 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.106 4.106 28 C -0.080 4.080 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.415 0.585 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.014 0.986 38 H 0.019 0.981 39 H 0.249 0.751 40 H 0.033 0.967 41 H 0.023 0.977 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.604 -6.010 -4.264 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.038 4.038 3 C -0.158 4.158 4 C -0.072 4.072 5 C -0.165 4.165 6 C 0.346 3.654 7 O -0.455 6.455 8 N -0.347 5.347 9 C 0.039 3.961 10 H 0.094 0.906 11 C -0.166 4.166 12 C 0.059 3.941 13 N -0.352 5.352 14 C -0.376 4.376 15 H 0.095 0.905 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.808 3.192 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.195 1.195 22 C 0.002 3.998 23 C -0.032 4.032 24 C -0.169 4.169 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.123 4.123 28 C -0.080 4.080 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -28.943 -6.626 -4.175 29.984 hybrid contribution 1.605 0.250 0.603 1.732 sum -27.338 -6.376 -3.572 28.298 Atomic orbital electron populations 1.21022 0.87892 1.04766 1.03994 1.20408 0.98100 0.91499 0.93826 1.21022 0.93173 0.99350 1.02213 1.21693 0.95223 0.96990 0.93324 1.19795 0.91214 0.94980 1.10482 1.18601 0.88080 0.83312 0.75366 1.90569 1.69190 1.33783 1.51973 1.45663 1.06307 1.09309 1.73385 1.21840 0.79195 0.99208 0.95813 0.90583 1.23006 0.97110 0.96572 0.99935 1.20943 0.92689 0.95512 0.84910 1.44675 1.09973 1.63237 1.17360 1.19414 0.91333 1.29465 0.97437 0.90545 1.25653 1.00309 1.00228 0.99376 1.70156 1.25363 1.40858 1.23340 0.85059 0.78858 0.76819 0.78461 1.21353 1.21495 1.19512 1.21917 0.86865 0.95286 0.95699 1.18099 0.93370 0.92745 0.98961 1.22125 1.02692 0.92507 0.99558 1.21300 0.95439 0.98196 0.98726 1.21252 0.93568 0.99845 0.99468 1.21445 1.01310 0.90623 0.98972 1.18234 0.91364 0.95429 1.02954 0.89276 0.89135 0.89942 0.81834 0.82989 0.74656 0.89281 0.88794 0.96811 0.96236 0.94146 0.94965 0.95815 0.84239 0.84858 0.82965 0.82011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.52 71.23 0.68 -0.16 16 2 C -0.04 -0.57 5.89 -19.75 -0.12 -0.69 16 3 C -0.14 -1.98 9.56 21.97 0.21 -1.77 16 4 C -0.05 -0.98 9.51 22.54 0.21 -0.77 16 5 C -0.16 -4.33 5.90 -19.87 -0.12 -4.44 16 6 C 0.56 18.13 7.72 86.67 0.67 18.80 16 7 O -0.57 -23.28 13.03 -4.02 -0.05 -23.34 16 8 N -0.70 -20.09 5.15 -439.17 -2.26 -22.35 16 9 C 0.15 5.38 3.42 46.39 0.16 5.54 16 10 H 0.08 3.20 7.54 -2.39 -0.02 3.18 16 11 C -0.13 -4.47 6.60 31.78 0.21 -4.26 16 12 C 0.18 9.14 5.37 86.73 0.47 9.61 16 13 N -0.63 -33.61 3.39 -691.98 -2.35 -35.96 16 14 C -0.25 -14.53 10.28 84.03 0.86 -13.67 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 16 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 17 N -0.95 -57.67 10.31 21.65 0.22 -57.45 16 18 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.13 5.75 6.93 86.86 0.60 6.35 16 23 C -0.03 -0.86 5.76 -21.12 -0.12 -0.98 16 24 C -0.15 -4.50 9.21 22.27 0.21 -4.30 16 25 C -0.12 -2.73 9.95 22.06 0.22 -2.51 16 26 C -0.12 -2.13 9.95 22.04 0.22 -1.91 16 27 C -0.11 -1.72 9.27 22.35 0.21 -1.51 16 28 C -0.08 -1.66 5.74 -21.31 -0.12 -1.78 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 31 H 0.08 0.43 6.38 -2.38 -0.02 0.41 16 32 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.15 1.93 6.42 -2.91 -0.02 1.91 16 34 H 0.41 8.71 6.63 -92.71 -0.61 8.10 16 35 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.09 2.71 8.00 -2.39 -0.02 2.69 16 37 H 0.01 0.76 7.38 -2.39 -0.02 0.75 16 38 H 0.02 1.05 7.51 -2.38 -0.02 1.04 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.14 4.98 4.87 -4.55 -0.02 4.96 16 43 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.16 1.42 6.33 -2.91 -0.02 1.40 16 Total: -1.00 -78.18 360.86 2.90 -75.28 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.40 Total: 16.46 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.91 Total: -1.63 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.39 Total: -115.76 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -78.18 2.90 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015762302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.450 kcal (2) G-P(sol) polarization free energy of solvation -78.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds