Wall clock time and date at job start Tue Mar 31 2020 13:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36350 * 119.47014 * 2 1 4 4 C 1.40443 * 120.08274 * 179.97438 * 3 2 1 5 5 C 1.40814 * 121.26387 * 179.97438 * 4 3 2 6 6 C 1.36629 * 118.15389 * 180.30410 * 5 4 3 7 7 C 1.39237 * 119.90705 * 359.50309 * 6 5 4 8 8 N 1.31224 * 121.69650 * 0.48217 * 7 6 5 9 9 C 1.33356 * 121.35482 * 359.77651 * 8 7 6 10 10 C 1.41780 * 121.05133 * 179.97438 * 9 8 7 11 11 C 1.47428 * 120.33298 * 0.03212 * 10 9 8 12 12 O 1.21604 * 120.00127 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00267 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00534 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.41035 * 35.14476 * 14 13 11 16 16 C 1.52956 * 109.41581 * 154.99685 * 14 13 11 17 17 C 1.53225 * 109.40745 * 183.70527 * 16 14 13 18 18 C 1.51270 * 108.53719 * 305.37698 * 17 16 14 19 19 C 1.37877 * 120.85014 * 231.32341 * 18 17 16 20 20 N 1.31516 * 119.99736 * 0.02562 * 19 18 17 21 21 Si 1.86801 * 120.00097 * 179.97438 * 19 18 17 22 22 H 1.48503 * 109.46885 * 59.99708 * 21 19 18 23 23 H 1.48496 * 109.47109 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46823 * 300.00102 * 21 19 18 25 25 C 1.51270 * 118.29937 * 51.34788 * 18 17 16 26 26 C 1.52956 * 109.41521 * 275.35675 * 14 13 11 27 27 C 1.38738 * 119.33306 * 180.02562 * 10 9 8 28 28 H 1.08999 * 109.47045 * 89.99708 * 1 2 3 29 29 H 1.09003 * 109.47664 * 209.99620 * 1 2 3 30 30 H 1.08997 * 109.47344 * 330.00064 * 1 2 3 31 31 H 1.07992 * 119.96197 * 359.95835 * 3 2 1 32 32 H 1.08002 * 120.92059 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.04593 * 179.72299 * 6 5 4 34 34 H 1.08000 * 119.14932 * 180.26227 * 7 6 5 35 35 H 0.97008 * 119.99514 * 359.97438 * 13 11 10 36 36 H 1.09003 * 109.48745 * 303.69077 * 16 14 13 37 37 H 1.09008 * 109.47888 * 63.72543 * 16 14 13 38 38 H 1.09003 * 109.62663 * 65.09092 * 17 16 14 39 39 H 1.08995 * 109.62816 * 185.65938 * 17 16 14 40 40 H 0.97004 * 119.99689 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.62867 * 68.36715 * 25 18 17 42 42 H 1.09006 * 109.62552 * 188.74628 * 25 18 17 43 43 H 1.09004 * 109.47965 * 296.26902 * 26 14 13 44 44 H 1.08998 * 109.48102 * 56.30993 * 26 14 13 45 45 H 1.07995 * 119.64049 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1777 1.1871 0.0000 4 6 3.5821 1.2021 0.0005 5 6 4.3000 2.4135 0.0000 6 6 5.6650 2.3540 -0.0058 7 6 6.3060 1.1179 -0.0005 8 7 5.6322 -0.0081 0.0006 9 6 4.2987 -0.0189 0.0012 10 6 3.5772 -1.2394 0.0019 11 6 4.2937 -2.5279 0.0027 12 8 5.5096 -2.5475 0.0032 13 7 3.6012 -3.6841 0.0028 14 6 4.3132 -4.9644 0.0030 15 1 5.2239 -4.8724 0.5948 16 6 3.4176 -6.0441 0.6128 17 6 4.1947 -7.3619 0.6980 18 6 4.7260 -7.6968 -0.6782 19 6 4.5083 -8.9381 -1.2373 20 7 3.8306 -9.8488 -0.5731 21 14 5.1745 -9.3260 -2.9388 22 1 6.6532 -9.1887 -2.9345 23 1 4.8080 -10.7167 -3.3087 24 1 4.5925 -8.3810 -3.9255 25 6 5.5027 -6.6350 -1.4250 26 6 4.6781 -5.3436 -1.4332 27 6 2.1902 -1.2090 0.0019 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6285 2.1169 -0.0007 32 1 3.7858 3.3633 -0.0004 33 1 6.2459 3.2644 -0.0109 34 1 7.3855 1.0852 -0.0009 35 1 2.6313 -3.6685 0.0027 36 1 3.1091 -5.7386 1.6127 37 1 2.5361 -6.1817 -0.0135 38 1 5.0259 -7.2524 1.3947 39 1 3.5311 -8.1570 1.0377 40 1 3.6778 -10.7223 -0.9663 41 1 6.4549 -6.4582 -0.9249 42 1 5.6823 -6.9646 -2.4484 43 1 3.7668 -5.4978 -2.0111 44 1 5.2630 -4.5416 -1.8834 45 1 1.6357 -2.1357 0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154202028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:11 Heat of formation + Delta-G solvation = 5.030400 kcal Electronic energy + Delta-G solvation = -26749.456665 eV Core-core repulsion = 23116.870558 eV Total energy + Delta-G solvation = -3632.586107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14487 -39.19727 -37.60738 -36.60861 -33.67983 -33.55425 -32.27370 -31.67229 -30.35182 -29.60410 -27.36580 -27.16775 -24.59118 -23.57555 -22.88643 -21.85684 -21.41290 -19.87662 -19.42601 -18.25530 -17.45850 -17.13101 -16.23213 -15.74685 -15.42951 -14.95742 -14.77251 -14.42549 -14.25272 -13.99259 -13.93248 -13.63254 -13.30152 -13.14958 -13.03046 -12.71658 -12.57718 -12.20529 -12.16007 -12.01646 -11.60309 -11.53504 -11.43149 -10.96737 -10.78566 -10.66613 -10.62229 -10.15541 -9.99559 -9.79492 -9.67275 -9.16222 -8.93530 -8.91863 -8.78427 -8.45119 -8.42559 -8.20597 -6.08180 -3.98399 -0.01811 0.59948 1.60501 2.54314 3.32100 3.38110 3.40973 3.42173 3.51909 4.06932 4.11808 4.31859 4.41772 4.43932 4.54291 4.63338 4.72945 4.86533 4.99601 5.17911 5.19360 5.25019 5.28933 5.44007 5.58969 5.65401 5.70652 5.77600 5.84843 5.93188 5.96259 6.15851 6.25103 6.28208 6.52082 6.54052 6.57485 6.75889 6.84281 6.94234 7.00713 7.11368 7.30816 7.47554 7.67390 7.74571 7.80273 7.89301 8.03650 8.40931 8.70511 8.98400 9.57270 11.01539 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.002970 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.576884 B = 9424.409029 C =10246.393595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.063 4.063 6 C -0.174 4.174 7 C 0.126 3.874 8 N -0.432 5.432 9 C 0.156 3.844 10 C -0.095 4.095 11 C 0.545 3.455 12 O -0.500 6.500 13 N -0.724 5.724 14 C 0.157 3.843 15 H 0.079 0.921 16 C -0.114 4.114 17 C 0.013 3.987 18 C -0.489 4.489 19 C 0.076 3.924 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.275 1.275 25 C -0.009 4.009 26 C -0.113 4.113 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.390 0.610 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.007 0.993 39 H 0.061 0.939 40 H 0.264 0.736 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.050 0.950 44 H 0.038 0.962 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 25.315 1.481 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.101 4.101 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.194 4.194 7 C -0.046 4.046 8 N -0.138 5.138 9 C 0.033 3.967 10 C -0.099 4.099 11 C 0.330 3.670 12 O -0.374 6.374 13 N -0.375 5.375 14 C 0.054 3.946 15 H 0.097 0.903 16 C -0.152 4.152 17 C -0.025 4.025 18 C -0.508 4.508 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.200 1.200 25 C -0.047 4.047 26 C -0.152 4.152 27 C -0.087 4.087 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.223 0.777 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.214 24.192 1.485 24.792 hybrid contribution -0.649 0.662 -1.027 1.384 sum -5.863 24.854 0.458 25.540 Atomic orbital electron populations 1.20856 0.90251 1.03326 1.02839 1.19585 0.96759 0.92587 1.00026 1.20957 0.92254 0.98190 0.98695 1.18802 0.94665 0.94010 1.03298 1.21418 0.94382 0.97132 0.96016 1.21961 0.95402 0.99852 1.02172 1.23193 1.00969 0.87348 0.93138 1.68348 1.06723 1.29331 1.09388 1.18645 0.89753 0.91217 0.97133 1.20132 0.92984 0.93164 1.03576 1.17897 0.87604 0.83166 0.78295 1.90846 1.12560 1.86846 1.47167 1.46369 1.09798 1.06356 1.74992 1.21027 0.95693 0.80021 0.97825 0.90287 1.21932 0.98707 0.97212 0.97387 1.19334 0.95432 0.91954 0.95734 1.20053 1.33146 0.96279 1.01296 1.24826 0.94604 0.95705 0.97473 1.69823 1.39806 1.05242 1.38055 0.86654 0.79839 0.76788 0.84791 1.19963 1.21915 1.20020 1.19592 0.95670 0.93077 0.96325 1.21895 0.99973 0.98331 0.95021 1.21389 0.92777 0.98400 0.96104 0.90695 0.90926 0.91247 0.85040 0.84418 0.84543 0.82338 0.77651 0.94594 0.92757 0.97505 0.92077 0.92562 0.96095 0.95689 0.93110 0.94372 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.98 36.00 0.36 -0.34 16 2 C -0.09 -0.82 5.84 -105.07 -0.61 -1.43 16 3 C -0.08 -0.74 9.36 -39.43 -0.37 -1.11 16 4 C -0.11 -1.20 5.74 -106.82 -0.61 -1.81 16 5 C -0.06 -0.55 9.90 -39.19 -0.39 -0.94 16 6 C -0.17 -1.51 10.03 -39.79 -0.40 -1.90 16 7 C 0.13 1.48 11.15 -17.44 -0.19 1.29 16 8 N -0.43 -6.98 8.44 -10.76 -0.09 -7.07 16 9 C 0.16 2.34 6.61 -84.58 -0.56 1.78 16 10 C -0.09 -1.42 5.90 -104.62 -0.62 -2.04 16 11 C 0.55 9.98 7.72 -12.52 -0.10 9.88 16 12 O -0.50 -11.09 14.85 5.27 0.08 -11.01 16 13 N -0.72 -12.30 5.02 -54.93 -0.28 -12.57 16 14 C 0.16 3.20 2.35 -67.98 -0.16 3.04 16 15 H 0.08 1.79 7.58 -51.93 -0.39 1.39 16 16 C -0.11 -2.36 5.40 -26.64 -0.14 -2.50 16 17 C 0.01 0.33 5.97 -27.49 -0.16 0.17 16 18 C -0.49 -13.04 5.51 -98.92 -0.55 -13.58 16 19 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 20 N -0.89 -25.67 12.73 55.43 0.71 -24.96 16 21 Si 0.89 21.68 26.80 -169.99 -4.56 17.13 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 C -0.01 -0.21 5.59 -27.48 -0.15 -0.36 16 26 C -0.11 -2.48 5.50 -26.63 -0.15 -2.63 16 27 C -0.07 -0.74 9.15 -39.16 -0.36 -1.10 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.39 5.33 6.62 -40.82 -0.27 5.06 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.60 5.17 -51.93 -0.27 0.33 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.14 1.23 6.37 -52.49 -0.33 0.90 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -33.94 362.80 -10.19 -44.13 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.26 Total: 0.49 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -5.26 Total: -11.59 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.34 Total: -44.61 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.56 Total: 17.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.94 -10.19 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154202028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.158 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds