Wall clock time and date at job start Tue Mar 31 2020 13:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36350 * 119.47014 * 2 1 4 4 C 1.40443 * 120.08274 * 179.97438 * 3 2 1 5 5 C 1.40814 * 121.26387 * 179.97438 * 4 3 2 6 6 C 1.36629 * 118.15389 * 180.30410 * 5 4 3 7 7 C 1.39237 * 119.90705 * 359.50309 * 6 5 4 8 8 N 1.31224 * 121.69650 * 0.48217 * 7 6 5 9 9 C 1.33356 * 121.35482 * 359.77651 * 8 7 6 10 10 C 1.41780 * 121.05133 * 179.97438 * 9 8 7 11 11 C 1.47428 * 120.33298 * 0.03212 * 10 9 8 12 12 O 1.21604 * 120.00127 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00267 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00534 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.41035 * 35.14476 * 14 13 11 16 16 C 1.52956 * 109.41581 * 154.99685 * 14 13 11 17 17 C 1.53225 * 109.40745 * 183.70527 * 16 14 13 18 18 C 1.51270 * 108.53719 * 305.37698 * 17 16 14 19 19 C 1.37877 * 120.85014 * 231.32341 * 18 17 16 20 20 N 1.31516 * 119.99736 * 0.02562 * 19 18 17 21 21 Si 1.86801 * 120.00097 * 179.97438 * 19 18 17 22 22 H 1.48503 * 109.46885 * 59.99708 * 21 19 18 23 23 H 1.48496 * 109.47109 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46823 * 300.00102 * 21 19 18 25 25 C 1.51270 * 118.29937 * 51.34788 * 18 17 16 26 26 C 1.52956 * 109.41521 * 275.35675 * 14 13 11 27 27 C 1.38738 * 119.33306 * 180.02562 * 10 9 8 28 28 H 1.08999 * 109.47045 * 89.99708 * 1 2 3 29 29 H 1.09003 * 109.47664 * 209.99620 * 1 2 3 30 30 H 1.08997 * 109.47344 * 330.00064 * 1 2 3 31 31 H 1.07992 * 119.96197 * 359.95835 * 3 2 1 32 32 H 1.08002 * 120.92059 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.04593 * 179.72299 * 6 5 4 34 34 H 1.08000 * 119.14932 * 180.26227 * 7 6 5 35 35 H 0.97008 * 119.99514 * 359.97438 * 13 11 10 36 36 H 1.09003 * 109.48745 * 303.69077 * 16 14 13 37 37 H 1.09008 * 109.47888 * 63.72543 * 16 14 13 38 38 H 1.09003 * 109.62663 * 65.09092 * 17 16 14 39 39 H 1.08995 * 109.62816 * 185.65938 * 17 16 14 40 40 H 0.97004 * 119.99689 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.62867 * 68.36715 * 25 18 17 42 42 H 1.09006 * 109.62552 * 188.74628 * 25 18 17 43 43 H 1.09004 * 109.47965 * 296.26902 * 26 14 13 44 44 H 1.08998 * 109.48102 * 56.30993 * 26 14 13 45 45 H 1.07995 * 119.64049 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1777 1.1871 0.0000 4 6 3.5821 1.2021 0.0005 5 6 4.3000 2.4135 0.0000 6 6 5.6650 2.3540 -0.0058 7 6 6.3060 1.1179 -0.0005 8 7 5.6322 -0.0081 0.0006 9 6 4.2987 -0.0189 0.0012 10 6 3.5772 -1.2394 0.0019 11 6 4.2937 -2.5279 0.0027 12 8 5.5096 -2.5475 0.0032 13 7 3.6012 -3.6841 0.0028 14 6 4.3132 -4.9644 0.0030 15 1 5.2239 -4.8724 0.5948 16 6 3.4176 -6.0441 0.6128 17 6 4.1947 -7.3619 0.6980 18 6 4.7260 -7.6968 -0.6782 19 6 4.5083 -8.9381 -1.2373 20 7 3.8306 -9.8488 -0.5731 21 14 5.1745 -9.3260 -2.9388 22 1 6.6532 -9.1887 -2.9345 23 1 4.8080 -10.7167 -3.3087 24 1 4.5925 -8.3810 -3.9255 25 6 5.5027 -6.6350 -1.4250 26 6 4.6781 -5.3436 -1.4332 27 6 2.1902 -1.2090 0.0019 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6285 2.1169 -0.0007 32 1 3.7858 3.3633 -0.0004 33 1 6.2459 3.2644 -0.0109 34 1 7.3855 1.0852 -0.0009 35 1 2.6313 -3.6685 0.0027 36 1 3.1091 -5.7386 1.6127 37 1 2.5361 -6.1817 -0.0135 38 1 5.0259 -7.2524 1.3947 39 1 3.5311 -8.1570 1.0377 40 1 3.6778 -10.7223 -0.9663 41 1 6.4549 -6.4582 -0.9249 42 1 5.6823 -6.9646 -2.4484 43 1 3.7668 -5.4978 -2.0111 44 1 5.2630 -4.5416 -1.8834 45 1 1.6357 -2.1357 0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154202028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:10 Heat of formation + Delta-G solvation = -16.124910 kcal Electronic energy + Delta-G solvation = -26750.374028 eV Core-core repulsion = 23116.870558 eV Total energy + Delta-G solvation = -3633.503470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02323 -40.56868 -38.52815 -38.22925 -35.38060 -34.47331 -33.47283 -32.94302 -31.58055 -31.28898 -28.96160 -27.96633 -25.54786 -24.77803 -23.63200 -23.52778 -23.21446 -21.36179 -21.03183 -19.05477 -18.65882 -18.03345 -17.79480 -16.91680 -16.82899 -16.45175 -16.07486 -15.61794 -15.29609 -15.18353 -14.98675 -14.81919 -14.55368 -14.18267 -14.17473 -14.06722 -13.92356 -13.79019 -13.43424 -13.18825 -12.81076 -12.79112 -12.68058 -12.56725 -12.25445 -12.17354 -12.02131 -11.83873 -11.62882 -11.47737 -11.14479 -10.86106 -10.70486 -10.56711 -10.09877 -9.92303 -9.70391 -9.18719 -8.19646 -6.13555 -0.83487 -0.18251 0.77305 1.37512 1.39287 1.47095 1.73577 2.17916 2.25856 2.39026 3.08211 3.15756 3.34237 3.54701 3.68791 3.78920 3.92755 4.02505 4.04854 4.15475 4.16828 4.36753 4.45028 4.48124 4.61857 4.67208 4.73502 4.81096 4.88084 4.92744 4.93490 4.96689 5.03795 5.04743 5.13073 5.16761 5.20477 5.21586 5.28007 5.45705 5.50792 5.56002 5.59828 5.68049 5.74153 5.79640 5.85246 6.33029 6.65385 6.90891 7.09860 7.36070 7.44528 8.91018 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.002970 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.576884 B = 9424.409029 C =10246.393595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.061 4.061 4 C -0.123 4.123 5 C -0.051 4.051 6 C -0.173 4.173 7 C 0.114 3.886 8 N -0.500 5.500 9 C 0.126 3.874 10 C -0.142 4.142 11 C 0.544 3.456 12 O -0.552 6.552 13 N -0.713 5.713 14 C 0.169 3.831 15 H 0.051 0.949 16 C -0.099 4.099 17 C 0.010 3.990 18 C -0.502 4.502 19 C 0.029 3.971 20 N -0.925 5.925 21 Si 0.939 3.061 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.265 1.265 25 C -0.010 4.010 26 C -0.105 4.105 27 C -0.048 4.048 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.408 0.592 36 H 0.059 0.941 37 H 0.061 0.939 38 H -0.005 1.005 39 H 0.038 0.962 40 H 0.265 0.735 41 H 0.011 0.989 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.033 0.967 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 29.183 0.847 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.079 4.079 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.192 4.192 7 C -0.057 4.057 8 N -0.207 5.207 9 C 0.003 3.997 10 C -0.146 4.146 11 C 0.332 3.668 12 O -0.430 6.430 13 N -0.365 5.365 14 C 0.065 3.935 15 H 0.069 0.931 16 C -0.137 4.137 17 C -0.028 4.028 18 C -0.521 4.521 19 C -0.170 4.170 20 N -0.565 5.565 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.048 4.048 26 C -0.144 4.144 27 C -0.069 4.069 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.192 0.808 32 H 0.201 0.799 33 H 0.193 0.807 34 H 0.186 0.814 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.014 0.986 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.729 28.082 0.849 29.138 hybrid contribution 0.134 -0.404 -0.765 0.875 sum -7.595 27.678 0.084 28.701 Atomic orbital electron populations 1.20914 0.87542 1.04629 1.03809 1.19951 0.98534 0.91743 0.99705 1.21479 0.91294 0.99887 0.95265 1.19136 0.95965 0.93677 1.03765 1.21970 0.94406 0.97823 0.93495 1.22298 0.96046 0.99758 1.01111 1.23626 1.01756 0.88033 0.92314 1.68252 1.08167 1.31868 1.12455 1.18946 0.89866 0.92633 0.98266 1.19919 0.94396 0.91455 1.08866 1.18496 0.87254 0.84384 0.76695 1.90801 1.14882 1.87656 1.49633 1.46056 1.10552 1.04978 1.74922 1.20600 0.95003 0.81566 0.96311 0.93058 1.21700 0.98067 0.94957 0.99015 1.19292 0.95090 0.93568 0.94887 1.20551 1.32756 0.96764 1.02009 1.25503 0.95129 0.95725 1.00599 1.69932 1.41398 1.05636 1.39516 0.85861 0.79263 0.76878 0.81401 1.19846 1.21489 1.19031 1.19591 0.95408 0.93815 0.96003 1.21765 0.99660 0.96779 0.96151 1.21677 0.91304 1.00378 0.93515 0.89742 0.90491 0.89217 0.80794 0.79883 0.80653 0.81357 0.75525 0.92211 0.92023 0.98631 0.94357 0.92579 0.97062 0.95452 0.92391 0.94816 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.98 71.23 0.71 -0.15 16 2 C -0.10 -1.47 5.84 -20.16 -0.12 -1.59 16 3 C -0.06 -0.84 9.36 22.37 0.21 -0.63 16 4 C -0.12 -2.50 5.74 -21.29 -0.12 -2.63 16 5 C -0.05 -0.70 9.90 22.52 0.22 -0.48 16 6 C -0.17 -2.55 10.03 22.13 0.22 -2.33 16 7 C 0.11 2.71 11.15 85.02 0.95 3.66 16 8 N -0.50 -16.99 8.44 -187.96 -1.59 -18.57 16 9 C 0.13 3.82 6.61 40.61 0.27 4.09 16 10 C -0.14 -4.36 5.90 -19.86 -0.12 -4.47 16 11 C 0.54 20.76 7.72 86.66 0.67 21.43 16 12 O -0.55 -26.20 14.85 -4.04 -0.06 -26.26 16 13 N -0.71 -24.45 5.02 -445.95 -2.24 -26.69 16 14 C 0.17 7.05 2.35 44.96 0.11 7.15 16 15 H 0.05 2.44 7.58 -2.39 -0.02 2.42 16 16 C -0.10 -4.10 5.40 30.65 0.17 -3.93 16 17 C 0.01 0.49 5.97 30.10 0.18 0.67 16 18 C -0.50 -27.29 5.51 -16.17 -0.09 -27.38 16 19 C 0.03 1.64 5.46 84.65 0.46 2.10 16 20 N -0.93 -54.37 12.73 21.45 0.27 -54.09 16 21 Si 0.94 44.73 26.80 68.60 1.84 46.57 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.01 -0.50 5.59 30.11 0.17 -0.33 16 26 C -0.10 -4.65 5.50 30.66 0.17 -4.48 16 27 C -0.05 -1.01 9.15 22.54 0.21 -0.80 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 31 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.41 10.78 6.62 -92.70 -0.61 10.16 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.04 2.11 7.07 -2.39 -0.02 2.10 16 40 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.03 1.32 5.17 -2.38 -0.01 1.31 16 43 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 44 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.15 2.45 6.37 -2.91 -0.02 2.43 16 Total: -1.00 -79.84 362.80 2.89 -76.95 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.40 Total: 12.20 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.26 Total: -10.10 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.55 Total: -99.36 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.84 Total: 46.57 kcal Total: -79.84 2.89 -76.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154202028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.827 kcal (2) G-P(sol) polarization free energy of solvation -79.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds