Wall clock time and date at job start Tue Mar 31 2020 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38253 * 120.00021 * 2 1 4 4 C 1.38214 * 120.00135 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99812 * 359.76592 * 4 3 2 6 6 C 1.38215 * 119.99689 * 0.46374 * 5 4 3 7 7 C 1.50702 * 119.99528 * 179.78921 * 6 5 4 8 8 N 1.46500 * 112.99977 * 159.39355 * 7 6 5 9 9 C 1.38091 * 120.00218 * 179.97438 * 8 7 6 10 10 N 1.32268 * 119.90105 * 359.97438 * 9 8 7 11 11 C 1.31973 * 121.86075 * 179.97438 * 10 9 8 12 12 C 1.50699 * 119.27321 * 180.02562 * 11 10 9 13 13 C 1.38677 * 121.44897 * 359.97438 * 11 10 9 14 14 C 1.38013 * 119.62696 * 0.02596 * 13 11 10 15 15 C 1.40996 * 118.28201 * 359.97438 * 14 13 11 16 16 C 1.41014 * 120.70535 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99769 * 150.07844 * 16 15 14 18 18 C 1.39946 * 120.00124 * 330.08215 * 16 15 14 19 19 N 1.30872 * 120.00300 * 162.09814 * 18 16 15 20 20 Si 1.86805 * 119.99944 * 342.09245 * 18 16 15 21 21 H 1.48498 * 109.46931 * 95.37834 * 20 18 16 22 22 H 1.48501 * 109.47162 * 215.37725 * 20 18 16 23 23 H 1.48500 * 109.47133 * 335.37611 * 20 18 16 24 24 C 1.54040 * 113.81463 * 291.21647 * 7 6 5 25 25 O 1.44571 * 85.38162 * 136.86912 * 24 7 6 26 26 C 1.44180 * 93.32543 * 335.80216 * 25 24 7 27 27 C 1.38217 * 119.99871 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47207 * 270.02579 * 1 2 3 29 29 H 1.08998 * 109.47597 * 30.02763 * 1 2 3 30 30 H 1.09005 * 109.46946 * 150.02870 * 1 2 3 31 31 H 1.08002 * 119.99985 * 359.97205 * 3 2 1 32 32 H 1.07997 * 120.00106 * 179.97438 * 4 3 2 33 33 H 1.08001 * 119.99755 * 180.25151 * 5 4 3 34 34 H 0.97000 * 119.99973 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.47382 * 90.00179 * 12 11 10 36 36 H 1.09003 * 109.46923 * 210.00117 * 12 11 10 37 37 H 1.09006 * 109.47253 * 329.99472 * 12 11 10 38 38 H 1.07998 * 120.18664 * 179.97438 * 13 11 10 39 39 H 1.07998 * 120.85446 * 180.02562 * 14 13 11 40 40 H 0.96999 * 120.00175 * 179.97438 * 19 18 16 41 41 H 1.09000 * 113.86600 * 251.07252 * 24 7 6 42 42 H 1.08993 * 113.86413 * 22.78214 * 24 7 6 43 43 H 1.09000 * 113.86234 * 270.04339 * 26 25 24 44 44 H 1.09001 * 113.86460 * 138.34334 * 26 25 24 45 45 H 1.07997 * 120.00137 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0060 6 6 3.5805 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 7 3.5252 -3.6297 0.4717 9 6 4.0737 -4.8956 0.5308 10 7 5.3294 -5.0880 0.1626 11 6 5.8926 -6.2808 0.2038 12 6 7.3280 -6.4334 -0.2290 13 6 5.1928 -7.3967 0.6377 14 6 3.8780 -7.2651 1.0363 15 6 3.2899 -5.9846 0.9867 16 6 1.9499 -5.7919 1.3814 17 1 1.6415 -4.8462 1.8020 18 6 1.0197 -6.8262 1.2282 19 7 -0.1076 -6.7962 1.8923 20 14 1.3869 -8.2496 0.0755 21 1 1.9683 -9.3758 0.8494 22 1 0.1297 -8.6947 -0.5776 23 1 2.3546 -7.8098 -0.9615 24 6 5.0923 -2.7836 -1.3087 25 8 6.1752 -3.2143 -0.4532 26 6 5.7241 -2.4172 0.6603 27 6 2.1980 -1.1970 0.0005 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 1.6582 2.1326 -0.0005 32 1 4.1204 2.1326 0.0001 33 1 5.3517 0.0000 0.0105 34 1 2.6041 -3.4872 0.7404 35 1 7.9836 -6.2908 0.6300 36 1 7.4794 -7.4316 -0.6399 37 1 7.5591 -5.6883 -0.9903 38 1 5.6736 -8.3634 0.6628 39 1 3.3146 -8.1207 1.3781 40 1 -0.7525 -7.5129 1.7859 41 1 4.6561 -3.5832 -1.9075 42 1 5.3177 -1.8887 -1.8887 43 1 6.1421 -1.4107 0.6800 44 1 5.7887 -2.9263 1.6220 45 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157677662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:24 Heat of formation + Delta-G solvation = 58.996796 kcal Electronic energy + Delta-G solvation = -27933.292973 eV Core-core repulsion = 24303.047024 eV Total energy + Delta-G solvation = -3630.245948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11417 -40.30245 -39.57648 -36.13904 -35.55115 -33.96097 -33.31433 -32.65214 -30.80333 -29.60697 -28.74169 -27.63249 -27.17836 -25.56881 -23.83154 -23.42575 -22.79746 -21.98421 -20.18470 -19.31375 -18.55798 -17.62148 -17.41868 -16.76291 -16.52761 -16.38389 -16.22564 -15.83933 -15.43572 -15.23755 -15.08734 -15.06729 -14.63577 -14.49524 -14.09435 -13.87381 -13.80777 -13.61178 -13.33229 -13.15302 -13.04499 -12.99819 -12.82531 -12.54019 -12.50553 -12.30869 -12.04979 -11.89955 -11.81494 -11.29119 -11.20154 -10.77849 -10.39696 -9.94551 -9.72069 -9.50423 -9.39666 -8.86512 -8.51126 -6.29392 0.36273 0.46236 0.73513 0.94913 1.23603 1.34746 1.45160 2.10384 2.46209 2.67788 2.77106 2.92173 3.50818 3.58260 3.77950 3.93267 4.01663 4.06531 4.16425 4.27532 4.30137 4.40251 4.49592 4.55573 4.62361 4.64771 4.76849 4.78882 4.80722 4.83370 4.91195 4.95367 5.02679 5.07288 5.08923 5.21580 5.26785 5.30267 5.36190 5.52873 5.54311 5.54948 5.63764 5.69513 5.73083 6.02326 6.09962 6.22240 6.42561 6.68599 6.79686 6.97478 7.87230 8.20656 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.005360 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.008176 B = 5222.160643 C = 7359.077039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.088 4.088 7 C 0.168 3.832 8 N -0.704 5.704 9 C 0.306 3.694 10 N -0.472 5.472 11 C 0.034 3.966 12 C -0.066 4.066 13 C -0.184 4.184 14 C -0.200 4.200 15 C -0.016 4.016 16 C -0.466 4.466 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.850 5.850 20 Si 0.958 3.042 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.041 3.959 25 O -0.336 6.336 26 C 0.036 3.964 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.405 0.595 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.291 0.709 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 13.629 -5.330 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.089 4.089 7 C 0.078 3.922 8 N -0.341 5.341 9 C 0.067 3.933 10 N -0.190 5.190 11 C -0.101 4.101 12 C -0.124 4.124 13 C -0.206 4.206 14 C -0.226 4.226 15 C -0.023 4.023 16 C -0.498 4.498 17 H 0.081 0.919 18 C -0.160 4.160 19 N -0.478 5.478 20 Si 0.783 3.217 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.189 1.189 24 C -0.039 4.039 25 O -0.253 6.253 26 C -0.043 4.043 27 C -0.152 4.152 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.686 14.116 -5.620 16.600 hybrid contribution -1.628 -1.795 0.447 2.464 sum 5.058 12.321 -5.173 14.288 Atomic orbital electron populations 1.20845 0.90181 1.03386 1.02836 1.20156 0.97095 0.92905 0.98944 1.21389 0.94787 0.97705 1.00150 1.21462 0.94287 0.98432 0.98402 1.21181 1.00873 0.91070 1.00686 1.19749 0.93655 0.93890 1.01598 1.21751 0.90962 0.84387 0.95075 1.43700 1.14306 1.02847 1.73294 1.18694 0.90418 0.86203 0.97962 1.67477 1.08449 1.24027 1.18999 1.21072 0.97907 0.87894 1.03204 1.20314 0.89396 1.01816 1.00832 1.21499 0.94762 0.99698 1.04599 1.21201 0.95963 0.96635 1.08812 1.18223 0.94738 0.92319 0.97051 1.18966 0.92677 1.00458 1.37675 0.91900 1.26546 0.94129 1.00003 0.95323 1.69725 1.09218 1.33942 1.34868 0.85583 0.77438 0.78706 0.79972 1.18730 1.20651 1.18932 1.24316 0.86910 0.98881 0.93750 1.90016 1.48348 1.63102 1.23822 1.24395 0.91396 0.96043 0.92484 1.20940 0.94104 0.98066 1.02102 0.90852 0.89340 0.92404 0.83376 0.82606 0.83948 0.75545 0.91659 0.90678 0.92069 0.85415 0.87905 0.89910 0.92272 0.88037 0.87324 0.92329 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 10.01 71.24 0.71 -1.68 16 2 C -0.09 -2.22 5.88 -19.87 -0.12 -2.34 16 3 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 4 C -0.11 -1.96 10.05 22.27 0.22 -1.73 16 5 C -0.12 -2.65 9.10 22.27 0.20 -2.44 16 6 C -0.09 -2.54 5.26 -19.87 -0.10 -2.64 16 7 C 0.17 5.67 1.77 3.56 0.01 5.68 16 8 N -0.70 -29.60 5.37 -337.57 -1.81 -31.41 16 9 C 0.31 14.60 7.02 134.05 0.94 15.55 16 10 N -0.47 -21.21 5.21 -179.57 -0.94 -22.14 16 11 C 0.03 1.45 6.79 42.64 0.29 1.74 16 12 C -0.07 -2.16 10.15 71.24 0.72 -1.44 16 13 C -0.18 -7.97 9.69 22.32 0.22 -7.76 16 14 C -0.20 -9.82 7.27 22.89 0.17 -9.65 16 15 C -0.02 -0.83 5.12 -21.07 -0.11 -0.93 16 16 C -0.47 -25.52 8.94 23.36 0.21 -25.31 16 17 H 0.06 3.61 7.03 -2.91 -0.02 3.59 16 18 C 0.05 2.88 5.42 85.25 0.46 3.34 16 19 N -0.85 -46.17 13.93 21.83 0.30 -45.86 16 20 Si 0.96 43.90 24.53 68.60 1.68 45.58 16 21 H -0.26 -11.45 6.71 99.48 0.67 -10.78 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.26 -12.76 6.85 99.48 0.68 -12.08 16 24 C 0.04 1.34 7.78 72.30 0.56 1.90 16 25 O -0.34 -12.25 9.30 -148.98 -1.39 -13.63 16 26 C 0.04 1.15 7.60 72.29 0.55 1.70 16 27 C -0.13 -4.02 8.88 22.27 0.20 -3.82 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 30 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 31 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.14 2.55 6.14 -2.91 -0.02 2.53 16 34 H 0.41 17.57 4.88 -92.71 -0.45 17.12 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.10 5.02 4.82 -2.91 -0.01 5.00 16 40 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 41 H 0.06 2.25 8.05 -2.39 -0.02 2.23 16 42 H 0.10 2.66 8.04 -2.39 -0.02 2.64 16 43 H 0.11 2.64 5.92 -2.39 -0.01 2.62 16 44 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 45 H 0.10 3.47 6.40 -2.91 -0.02 3.45 16 Total: -1.00 -64.02 355.91 3.71 -60.31 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: 0.50 Total: 39.14 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 5.35 Total: -31.99 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -2.44 Total: -99.41 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.39 Total: -13.63 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.58 kcal Total: -64.02 3.71 -60.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157677662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.312 kcal (2) G-P(sol) polarization free energy of solvation -64.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds