Wall clock time and date at job start Tue Mar 31 2020 14:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31485 * 119.81356 * 2 1 4 4 C 1.32743 * 121.72947 * 180.26797 * 3 2 1 5 5 N 1.38368 * 119.43024 * 179.74911 * 4 3 2 6 6 C 1.46500 * 120.00149 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.67171 * 34.21720 * 6 5 4 8 8 C 1.53324 * 109.67638 * 273.67355 * 6 5 4 9 9 C 1.52739 * 108.37748 * 170.41536 * 8 6 5 10 10 C 1.50625 * 110.57875 * 51.15205 * 9 8 6 11 11 C 1.38917 * 117.74724 * 162.48366 * 10 9 8 12 12 C 1.37927 * 120.54270 * 179.41336 * 11 10 9 13 13 C 1.38270 * 119.77267 * 0.02882 * 12 11 10 14 14 C 1.37935 * 119.77183 * 0.12644 * 13 12 11 15 15 C 1.37658 * 122.56680 * 342.15166 * 10 9 8 16 16 C 1.50637 * 122.56418 * 0.74530 * 15 10 9 17 17 H 1.08999 * 109.25623 * 102.56136 * 16 15 10 18 18 O 1.42903 * 109.22100 * 222.00614 * 16 15 10 19 19 C 1.39704 * 121.13714 * 359.47806 * 4 3 2 20 20 C 1.36556 * 119.49435 * 0.25182 * 19 4 3 21 21 C 1.40755 * 119.81793 * 179.75094 * 2 1 3 22 22 C 1.41203 * 120.56750 * 359.97176 * 21 2 1 23 23 H 1.07994 * 120.00230 * 334.77784 * 22 21 2 24 24 C 1.39871 * 119.99475 * 154.77540 * 22 21 2 25 25 N 1.30896 * 120.00518 * 343.70170 * 24 22 21 26 26 Si 1.86805 * 119.99701 * 163.69909 * 24 22 21 27 27 H 1.48500 * 109.47003 * 60.00428 * 26 24 22 28 28 H 1.48499 * 109.46782 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47151 * 300.00135 * 26 24 22 30 30 H 1.08992 * 109.46809 * 270.24825 * 1 2 3 31 31 H 1.08997 * 109.47281 * 30.25444 * 1 2 3 32 32 H 1.09002 * 109.47021 * 150.25225 * 1 2 3 33 33 H 0.97007 * 120.00337 * 359.73142 * 5 4 3 34 34 H 1.09003 * 109.67896 * 290.12975 * 8 6 5 35 35 H 1.08992 * 109.68290 * 50.68992 * 8 6 5 36 36 H 1.09000 * 109.25355 * 290.86370 * 9 8 6 37 37 H 1.09006 * 109.22117 * 171.41709 * 9 8 6 38 38 H 1.08000 * 119.72541 * 359.43590 * 11 10 9 39 39 H 1.07999 * 120.11721 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.11696 * 180.10556 * 13 12 11 41 41 H 1.07996 * 119.72736 * 179.97438 * 14 13 12 42 42 H 0.96699 * 113.99807 * 301.09294 * 18 16 15 43 43 H 1.08008 * 120.25161 * 180.23355 * 19 4 3 44 44 H 1.08006 * 120.79542 * 180.02562 * 20 19 4 45 45 H 0.97000 * 120.00632 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1852 -0.0053 5 7 4.1267 2.4124 -0.0103 6 6 5.5903 2.4760 -0.0167 7 1 5.9912 1.6429 -0.5941 8 6 6.1162 2.4086 1.4219 9 6 7.6329 2.2351 1.3725 10 6 8.2557 3.2737 0.4767 11 6 9.6202 3.5020 0.6025 12 6 10.2520 4.4313 -0.1972 13 6 9.5220 5.1425 -1.1317 14 6 8.1665 4.9195 -1.2559 15 6 7.5280 3.9852 -0.4503 16 6 6.0450 3.7964 -0.6351 17 1 5.5153 4.6193 -0.1551 18 8 5.7418 3.7918 -2.0315 19 6 4.2494 0.0143 -0.0002 20 6 3.6199 -1.1975 0.0052 21 6 2.2070 -1.2212 0.0053 22 6 1.5092 -2.4488 0.0112 23 1 0.5070 -2.4983 0.4104 24 6 2.1161 -3.6006 -0.5000 25 7 3.1755 -3.4990 -1.2621 26 14 1.4149 -5.2840 -0.0950 27 1 0.0156 -5.3682 -0.5851 28 1 2.2337 -6.3328 -0.7544 29 1 1.4376 -5.4890 1.3755 30 1 -0.3633 0.0045 1.0276 31 1 -0.3634 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 3.6057 3.2307 -0.0139 34 1 5.8693 3.3316 1.9466 35 1 5.6663 1.5606 1.9380 36 1 7.8689 1.2421 0.9898 37 1 8.0389 2.3383 2.3788 38 1 10.1910 2.9469 1.3322 39 1 11.3133 4.6030 -0.0939 40 1 10.0114 5.8703 -1.7619 41 1 7.5970 5.4757 -1.9857 42 1 6.0024 4.6005 -2.4933 43 1 5.3282 0.0671 -0.0008 44 1 4.1883 -2.1159 0.0096 45 1 3.5962 -4.2977 -1.6169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158682098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:32 Heat of formation + Delta-G solvation = 1.252622 kcal Electronic energy + Delta-G solvation = -26818.591818 eV Core-core repulsion = 23185.841894 eV Total energy + Delta-G solvation = -3632.749924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48882 -38.63969 -37.25498 -35.82622 -34.26208 -33.17526 -31.49628 -30.97936 -30.36917 -29.25318 -27.69889 -26.77262 -24.25353 -23.55974 -22.58784 -22.11371 -21.16916 -20.22736 -19.24399 -17.80533 -17.17322 -16.72054 -16.26190 -15.69250 -15.43459 -14.98907 -14.85700 -14.40843 -14.15979 -13.80862 -13.58781 -13.41743 -13.20963 -13.11620 -12.75434 -12.47242 -12.28568 -12.02980 -11.76372 -11.57743 -11.54412 -11.45145 -11.29098 -11.14804 -11.08208 -10.98458 -10.77928 -10.51402 -10.43570 -10.13520 -9.61066 -9.30727 -8.96710 -8.75826 -8.57918 -8.09827 -7.92155 -6.75047 -6.50999 -4.11849 1.14449 1.19006 2.80240 3.03491 3.11190 3.14351 3.35219 3.53092 3.95391 4.01141 4.20125 4.50826 4.66315 4.70449 4.75790 4.83038 4.98531 5.07655 5.18684 5.24375 5.33539 5.48119 5.55244 5.72064 5.76552 5.80091 5.88748 5.93858 6.02085 6.12871 6.30141 6.34670 6.35107 6.45285 6.47445 6.58624 6.62144 6.73877 6.81002 6.86602 7.11386 7.28081 7.45630 7.54412 7.57800 7.81158 7.96817 8.33308 8.50083 8.72429 8.91343 8.99520 9.81158 10.30264 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.002904 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.654229 B = 9640.181485 C =10346.993331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.036 3.964 3 N -0.522 5.522 4 C 0.291 3.709 5 N -0.732 5.732 6 C 0.181 3.819 7 H 0.086 0.914 8 C -0.133 4.133 9 C -0.084 4.084 10 C -0.061 4.061 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.125 4.125 14 C -0.115 4.115 15 C -0.107 4.107 16 C 0.142 3.858 17 H 0.067 0.933 18 O -0.545 6.545 19 C -0.208 4.208 20 C -0.091 4.091 21 C 0.033 3.967 22 C -0.454 4.454 23 H 0.079 0.921 24 C 0.073 3.927 25 N -0.807 5.807 26 Si 0.906 3.094 27 H -0.266 1.266 28 H -0.280 1.280 29 H -0.266 1.266 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.388 0.612 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.370 0.630 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.309 13.071 2.551 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 N -0.238 5.238 4 C 0.058 3.942 5 N -0.369 5.369 6 C 0.073 3.927 7 H 0.104 0.896 8 C -0.173 4.173 9 C -0.121 4.121 10 C -0.061 4.061 11 C -0.140 4.140 12 C -0.137 4.137 13 C -0.143 4.143 14 C -0.133 4.133 15 C -0.108 4.108 16 C 0.082 3.918 17 H 0.085 0.915 18 O -0.350 6.350 19 C -0.232 4.232 20 C -0.117 4.117 21 C 0.028 3.972 22 C -0.486 4.486 23 H 0.097 0.903 24 C -0.142 4.142 25 N -0.434 5.434 26 Si 0.731 3.269 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.190 1.190 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.221 0.779 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.217 0.783 43 H 0.114 0.886 44 H 0.144 0.856 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.890 12.978 2.546 17.784 hybrid contribution 0.566 -0.664 -0.151 0.885 sum 12.455 12.315 2.395 17.678 Atomic orbital electron populations 1.20244 0.91288 1.01061 1.00147 1.20725 0.94637 0.87403 1.07437 1.66298 1.07367 1.31268 1.18853 1.17626 0.88151 0.84854 1.03563 1.43479 1.02661 1.05018 1.85727 1.20457 0.82065 0.95843 0.94317 0.89589 1.22110 0.94021 1.03363 0.97800 1.20555 0.95550 0.97521 0.98509 1.19718 0.93513 0.96512 0.96336 1.21196 0.94049 0.98688 1.00040 1.21085 0.99769 0.96623 0.96183 1.21008 0.94052 1.00243 0.98982 1.20993 0.95109 0.98034 0.99126 1.20254 0.96372 0.97176 0.96961 1.20821 0.89479 0.98630 0.82872 0.91504 1.86755 1.84743 1.43481 1.20072 1.20803 0.98115 0.92891 1.11419 1.21268 0.94878 0.96122 0.99457 1.18142 0.92191 0.93055 0.93817 1.19293 1.01526 0.91934 1.35812 0.90318 1.25847 0.94448 1.01152 0.92784 1.69812 1.18556 1.31348 1.23638 0.86406 0.79757 0.81023 0.79717 1.19107 1.20555 1.19028 0.93503 0.93474 0.91376 0.77870 0.91605 0.89718 0.89926 0.90381 0.85962 0.86094 0.86068 0.86323 0.78316 0.88578 0.85629 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.58 36.01 0.34 -1.17 16 2 C 0.04 0.93 6.86 -81.79 -0.56 0.37 16 3 N -0.52 -13.04 10.29 -8.04 -0.08 -13.12 16 4 C 0.29 6.76 7.63 -155.13 -1.18 5.57 16 5 N -0.73 -13.74 5.22 -53.84 -0.28 -14.02 16 6 C 0.18 2.83 1.78 -67.90 -0.12 2.70 16 7 H 0.09 1.55 6.35 -51.93 -0.33 1.22 16 8 C -0.13 -1.78 5.53 -26.70 -0.15 -1.93 16 9 C -0.08 -0.94 5.67 -28.05 -0.16 -1.10 16 10 C -0.06 -0.70 5.74 -104.62 -0.60 -1.30 16 11 C -0.12 -1.22 9.61 -39.44 -0.38 -1.60 16 12 C -0.12 -1.08 10.05 -39.68 -0.40 -1.48 16 13 C -0.12 -1.14 10.05 -39.68 -0.40 -1.54 16 14 C -0.11 -1.15 9.20 -39.44 -0.36 -1.51 16 15 C -0.11 -1.27 5.57 -104.61 -0.58 -1.85 16 16 C 0.14 1.84 2.98 -28.05 -0.08 1.76 16 17 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 18 O -0.55 -7.58 13.15 -35.23 -0.46 -8.05 16 19 C -0.21 -4.95 8.93 -39.64 -0.35 -5.30 16 20 C -0.09 -2.37 8.73 -39.02 -0.34 -2.71 16 21 C 0.03 0.89 5.58 -106.65 -0.59 0.29 16 22 C -0.45 -11.96 8.14 -37.85 -0.31 -12.27 16 23 H 0.08 1.97 6.86 -52.49 -0.36 1.61 16 24 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 25 N -0.81 -21.05 10.95 55.54 0.61 -20.44 16 26 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 29 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.46 6.76 -51.93 -0.35 1.11 16 33 H 0.39 6.94 8.72 -40.82 -0.36 6.58 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.08 1.27 7.94 -51.93 -0.41 0.86 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.12 0.91 6.60 -52.49 -0.35 0.56 16 42 H 0.37 3.40 7.31 45.56 0.33 3.73 16 43 H 0.10 2.05 6.15 -52.48 -0.32 1.73 16 44 H 0.13 3.35 6.26 -52.48 -0.33 3.02 16 45 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -30.81 361.53 -11.53 -42.34 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.41 Total: 15.34 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -6.32 Total: -21.30 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.24 Total: -47.58 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.46 Total: -8.05 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.81 -11.53 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158682098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.590 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds