Wall clock time and date at job start Tue Mar 31 2020 14:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31485 * 119.81356 * 2 1 4 4 C 1.32743 * 121.72947 * 180.26797 * 3 2 1 5 5 N 1.38368 * 119.43024 * 179.74911 * 4 3 2 6 6 C 1.46500 * 120.00149 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.67171 * 34.21720 * 6 5 4 8 8 C 1.53324 * 109.67638 * 273.67355 * 6 5 4 9 9 C 1.52739 * 108.37748 * 170.41536 * 8 6 5 10 10 C 1.50625 * 110.57875 * 51.15205 * 9 8 6 11 11 C 1.38917 * 117.74724 * 162.48366 * 10 9 8 12 12 C 1.37927 * 120.54270 * 179.41336 * 11 10 9 13 13 C 1.38270 * 119.77267 * 0.02882 * 12 11 10 14 14 C 1.37935 * 119.77183 * 0.12644 * 13 12 11 15 15 C 1.37658 * 122.56680 * 342.15166 * 10 9 8 16 16 C 1.50637 * 122.56418 * 0.74530 * 15 10 9 17 17 H 1.08999 * 109.25623 * 102.56136 * 16 15 10 18 18 O 1.42903 * 109.22100 * 222.00614 * 16 15 10 19 19 C 1.39704 * 121.13714 * 359.47806 * 4 3 2 20 20 C 1.36556 * 119.49435 * 0.25182 * 19 4 3 21 21 C 1.40755 * 119.81793 * 179.75094 * 2 1 3 22 22 C 1.41203 * 120.56750 * 359.97176 * 21 2 1 23 23 H 1.07994 * 120.00230 * 334.77784 * 22 21 2 24 24 C 1.39871 * 119.99475 * 154.77540 * 22 21 2 25 25 N 1.30896 * 120.00518 * 343.70170 * 24 22 21 26 26 Si 1.86805 * 119.99701 * 163.69909 * 24 22 21 27 27 H 1.48500 * 109.47003 * 60.00428 * 26 24 22 28 28 H 1.48499 * 109.46782 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47151 * 300.00135 * 26 24 22 30 30 H 1.08992 * 109.46809 * 270.24825 * 1 2 3 31 31 H 1.08997 * 109.47281 * 30.25444 * 1 2 3 32 32 H 1.09002 * 109.47021 * 150.25225 * 1 2 3 33 33 H 0.97007 * 120.00337 * 359.73142 * 5 4 3 34 34 H 1.09003 * 109.67896 * 290.12975 * 8 6 5 35 35 H 1.08992 * 109.68290 * 50.68992 * 8 6 5 36 36 H 1.09000 * 109.25355 * 290.86370 * 9 8 6 37 37 H 1.09006 * 109.22117 * 171.41709 * 9 8 6 38 38 H 1.08000 * 119.72541 * 359.43590 * 11 10 9 39 39 H 1.07999 * 120.11721 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.11696 * 180.10556 * 13 12 11 41 41 H 1.07996 * 119.72736 * 179.97438 * 14 13 12 42 42 H 0.96699 * 113.99807 * 301.09294 * 18 16 15 43 43 H 1.08008 * 120.25161 * 180.23355 * 19 4 3 44 44 H 1.08006 * 120.79542 * 180.02562 * 20 19 4 45 45 H 0.97000 * 120.00632 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1852 -0.0053 5 7 4.1267 2.4124 -0.0103 6 6 5.5903 2.4760 -0.0167 7 1 5.9912 1.6429 -0.5941 8 6 6.1162 2.4086 1.4219 9 6 7.6329 2.2351 1.3725 10 6 8.2557 3.2737 0.4767 11 6 9.6202 3.5020 0.6025 12 6 10.2520 4.4313 -0.1972 13 6 9.5220 5.1425 -1.1317 14 6 8.1665 4.9195 -1.2559 15 6 7.5280 3.9852 -0.4503 16 6 6.0450 3.7964 -0.6351 17 1 5.5153 4.6193 -0.1551 18 8 5.7418 3.7918 -2.0315 19 6 4.2494 0.0143 -0.0002 20 6 3.6199 -1.1975 0.0052 21 6 2.2070 -1.2212 0.0053 22 6 1.5092 -2.4488 0.0112 23 1 0.5070 -2.4983 0.4104 24 6 2.1161 -3.6006 -0.5000 25 7 3.1755 -3.4990 -1.2621 26 14 1.4149 -5.2840 -0.0950 27 1 0.0156 -5.3682 -0.5851 28 1 2.2337 -6.3328 -0.7544 29 1 1.4376 -5.4890 1.3755 30 1 -0.3633 0.0045 1.0276 31 1 -0.3634 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 3.6057 3.2307 -0.0139 34 1 5.8693 3.3316 1.9466 35 1 5.6663 1.5606 1.9380 36 1 7.8689 1.2421 0.9898 37 1 8.0389 2.3383 2.3788 38 1 10.1910 2.9469 1.3322 39 1 11.3133 4.6030 -0.0939 40 1 10.0114 5.8703 -1.7619 41 1 7.5970 5.4757 -1.9857 42 1 6.0024 4.6005 -2.4933 43 1 5.3282 0.0671 -0.0008 44 1 4.1883 -2.1159 0.0096 45 1 3.5962 -4.2977 -1.6169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158682098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:31 Heat of formation + Delta-G solvation = -16.931350 kcal Electronic energy + Delta-G solvation = -26819.380334 eV Core-core repulsion = 23185.841894 eV Total energy + Delta-G solvation = -3633.538440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45223 -40.38803 -38.34806 -37.03560 -35.87101 -34.71439 -32.89429 -32.38800 -31.87010 -30.32625 -28.90442 -28.59169 -26.05298 -24.52633 -23.76398 -23.13666 -22.84044 -21.76072 -20.46857 -19.09638 -18.77855 -18.21981 -17.48658 -16.84169 -16.71291 -16.41542 -16.05236 -15.51752 -15.43889 -15.20169 -15.10107 -14.71846 -14.52732 -14.29262 -13.95334 -13.80257 -13.57706 -13.45330 -13.28397 -13.21674 -13.12272 -12.77855 -12.70500 -12.59215 -12.37509 -12.26503 -12.16434 -12.06309 -11.53581 -11.46395 -11.14666 -11.07223 -10.37065 -10.02403 -9.87110 -9.71561 -9.52952 -8.62481 -8.34521 -6.07490 0.37618 0.45001 0.90380 1.15398 1.42172 1.52810 1.59934 2.26137 2.51969 2.77094 2.85346 3.23056 3.57834 3.72398 3.78694 3.90328 4.00104 4.04616 4.17060 4.20736 4.29660 4.33696 4.41680 4.59512 4.63140 4.67390 4.72016 4.73627 4.83708 4.89989 5.01682 5.05444 5.06917 5.10341 5.11982 5.22393 5.26072 5.38907 5.53055 5.56726 5.60003 5.67199 5.69339 5.90516 6.02983 6.08618 6.51333 6.64752 6.76915 6.87770 6.97786 7.16404 7.89530 8.44158 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.002904 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.654229 B = 9640.181485 C =10346.993331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.021 3.979 3 N -0.537 5.537 4 C 0.296 3.704 5 N -0.723 5.723 6 C 0.177 3.823 7 H 0.058 0.942 8 C -0.125 4.125 9 C -0.079 4.079 10 C -0.079 4.079 11 C -0.130 4.130 12 C -0.120 4.120 13 C -0.127 4.127 14 C -0.121 4.121 15 C -0.126 4.126 16 C 0.150 3.850 17 H 0.080 0.920 18 O -0.570 6.570 19 C -0.215 4.215 20 C -0.108 4.108 21 C -0.002 4.002 22 C -0.482 4.482 23 H 0.083 0.917 24 C 0.031 3.969 25 N -0.841 5.841 26 Si 0.980 3.020 27 H -0.259 1.259 28 H -0.273 1.273 29 H -0.262 1.262 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.394 0.606 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.389 0.611 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 14.351 2.806 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.117 4.117 3 N -0.254 5.254 4 C 0.061 3.939 5 N -0.359 5.359 6 C 0.070 3.930 7 H 0.076 0.924 8 C -0.164 4.164 9 C -0.116 4.116 10 C -0.079 4.079 11 C -0.148 4.148 12 C -0.137 4.137 13 C -0.145 4.145 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.091 3.909 17 H 0.098 0.902 18 O -0.378 6.378 19 C -0.239 4.239 20 C -0.135 4.135 21 C -0.007 4.007 22 C -0.513 4.513 23 H 0.101 0.899 24 C -0.181 4.181 25 N -0.469 5.469 26 Si 0.801 3.199 27 H -0.183 1.183 28 H -0.198 1.198 29 H -0.186 1.186 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.228 0.772 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.240 0.760 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.084 14.314 2.797 19.593 hybrid contribution 0.328 -0.886 -0.275 0.984 sum 13.412 13.428 2.523 19.146 Atomic orbital electron populations 1.20230 0.88968 1.01521 1.01319 1.21306 0.96490 0.87252 1.06653 1.66448 1.08005 1.31033 1.19951 1.17956 0.87995 0.86324 1.01579 1.43593 1.04110 1.03651 1.84593 1.20641 0.79909 0.96717 0.95743 0.92375 1.21974 0.95530 1.03004 0.95886 1.20507 0.93818 0.97372 0.99893 1.19813 0.94470 0.96885 0.96762 1.21433 0.93502 0.99130 1.00686 1.21466 1.01121 0.95736 0.95424 1.21383 0.93748 1.00388 0.99008 1.21269 0.95897 0.97680 0.99041 1.20221 0.95521 0.98711 0.98258 1.20653 0.90794 0.97002 0.82460 0.90243 1.86695 1.85177 1.45272 1.20701 1.20943 0.99059 0.92542 1.11316 1.21282 0.95111 0.96443 1.00666 1.18491 0.92723 0.94154 0.95315 1.19527 1.02094 0.92656 1.37009 0.89872 1.26703 0.94643 1.04779 0.92004 1.69887 1.19884 1.32631 1.24485 0.85281 0.79185 0.75933 0.79473 1.18300 1.19809 1.18598 0.91863 0.92230 0.91542 0.77189 0.90360 0.91849 0.90727 0.88271 0.84310 0.83582 0.83531 0.84303 0.76041 0.86949 0.86988 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.73 9.58 71.24 0.68 -2.05 16 2 C 0.02 1.10 6.86 43.23 0.30 1.40 16 3 N -0.54 -27.22 10.29 -179.36 -1.85 -29.06 16 4 C 0.30 14.02 7.63 133.31 1.02 15.04 16 5 N -0.72 -27.29 5.22 -324.25 -1.69 -28.98 16 6 C 0.18 5.54 1.78 45.01 0.08 5.62 16 7 H 0.06 2.16 6.35 -2.39 -0.02 2.14 16 8 C -0.12 -3.31 5.53 30.62 0.17 -3.14 16 9 C -0.08 -1.71 5.67 29.74 0.17 -1.54 16 10 C -0.08 -1.72 5.74 -19.86 -0.11 -1.83 16 11 C -0.13 -2.30 9.61 22.36 0.21 -2.09 16 12 C -0.12 -1.82 10.05 22.20 0.22 -1.59 16 13 C -0.13 -1.93 10.05 22.21 0.22 -1.71 16 14 C -0.12 -2.14 9.20 22.36 0.21 -1.93 16 15 C -0.13 -2.81 5.57 -19.86 -0.11 -2.92 16 16 C 0.15 3.78 2.98 29.74 0.09 3.87 16 17 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 18 O -0.57 -15.37 13.15 -148.98 -1.96 -17.33 16 19 C -0.21 -10.57 8.93 22.23 0.20 -10.37 16 20 C -0.11 -5.92 8.73 22.63 0.20 -5.72 16 21 C 0.00 -0.10 5.58 -21.18 -0.12 -0.22 16 22 C -0.48 -26.00 8.14 23.39 0.19 -25.81 16 23 H 0.08 4.24 6.86 -2.91 -0.02 4.22 16 24 C 0.03 1.60 5.19 85.23 0.44 2.04 16 25 N -0.84 -45.17 10.95 21.82 0.24 -44.93 16 26 Si 0.98 38.87 29.59 68.60 2.03 40.90 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 28 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 29 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 30 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.87 6.76 -2.39 -0.02 2.85 16 33 H 0.39 13.96 8.72 -92.70 -0.81 13.15 16 34 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 35 H 0.06 1.94 7.94 -2.39 -0.02 1.92 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.72 8.13 -2.38 -0.02 1.70 16 38 H 0.14 1.90 8.05 -2.91 -0.02 1.88 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.14 1.74 6.60 -2.91 -0.02 1.72 16 42 H 0.39 6.56 7.31 -74.06 -0.54 6.02 16 43 H 0.11 5.01 6.15 -2.91 -0.02 4.99 16 44 H 0.11 6.31 6.26 -2.91 -0.02 6.29 16 45 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 Total: -1.00 -68.14 361.53 0.52 -67.63 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.31 Total: 44.74 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.06 Total: -32.96 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -3.30 Total: -102.98 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.96 Total: -17.33 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -68.14 0.52 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158682098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.697 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds