Wall clock time and date at job start Tue Mar 31 2020 14:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38681 * 119.27154 * 2 1 4 4 C 1.38014 * 119.62018 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28602 * 359.97438 * 4 3 2 6 6 C 1.41015 * 120.70839 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00422 * 154.97105 * 6 5 4 8 8 C 1.39943 * 119.99863 * 334.69308 * 6 5 4 9 9 N 1.30878 * 120.00374 * 346.04174 * 8 6 5 10 10 Si 1.86801 * 120.00208 * 166.03819 * 8 6 5 11 11 H 1.48503 * 109.46917 * 60.00329 * 10 8 6 12 12 H 1.48506 * 109.47308 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47207 * 300.00033 * 10 8 6 14 14 C 1.41715 * 118.58567 * 0.24955 * 5 4 3 15 15 N 1.38090 * 119.90137 * 179.72641 * 14 5 4 16 16 C 1.46502 * 119.99419 * 180.02562 * 15 14 5 17 17 H 1.08997 * 109.67910 * 325.51191 * 16 15 14 18 18 C 1.53323 * 109.68142 * 86.07260 * 16 15 14 19 19 C 1.52728 * 108.39109 * 189.58154 * 18 16 15 20 20 C 1.50635 * 110.58702 * 308.89484 * 19 18 16 21 21 C 1.38916 * 117.74951 * 197.42387 * 20 19 18 22 22 C 1.37930 * 120.54282 * 180.60252 * 21 20 19 23 23 C 1.38264 * 119.77225 * 359.96778 * 22 21 20 24 24 C 1.37931 * 119.77324 * 359.87989 * 23 22 21 25 25 C 1.37664 * 122.56212 * 17.78687 * 20 19 18 26 26 C 1.50624 * 122.56489 * 359.26276 * 25 20 19 27 27 H 1.09008 * 109.22043 * 257.51127 * 26 25 20 28 28 O 1.42906 * 109.25370 * 138.07129 * 26 25 20 29 29 N 1.31972 * 119.27635 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47162 * 90.00099 * 1 2 3 31 31 H 1.09000 * 109.46728 * 210.00387 * 1 2 3 32 32 H 1.09003 * 109.46985 * 330.00345 * 1 2 3 33 33 H 1.07998 * 120.18973 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.85282 * 180.02562 * 4 3 2 35 35 H 0.96998 * 120.00415 * 180.02562 * 9 8 6 36 36 H 0.97002 * 120.00257 * 0.02562 * 15 14 5 37 37 H 1.09001 * 109.68243 * 309.30629 * 18 16 15 38 38 H 1.09001 * 109.68265 * 69.86087 * 18 16 15 39 39 H 1.09001 * 109.25304 * 188.60865 * 19 18 16 40 40 H 1.08997 * 109.25540 * 69.17740 * 19 18 16 41 41 H 1.07994 * 119.72888 * 0.56798 * 21 20 19 42 42 H 1.07996 * 120.11346 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.11837 * 179.90334 * 23 22 21 44 44 H 1.08006 * 119.73028 * 180.02562 * 24 23 22 45 45 H 0.96696 * 114.00236 * 58.89241 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 -0.0005 5 6 4.2409 -0.0194 -0.0005 6 6 5.6501 -0.0704 -0.0016 7 1 6.1595 -0.9366 0.3941 8 6 6.3886 0.9990 -0.5207 9 7 5.7954 1.9134 -1.2452 10 14 8.2211 1.1214 -0.1796 11 1 8.9061 -0.0817 -0.7168 12 1 8.7670 2.3360 -0.8371 13 1 8.4473 1.2071 1.2855 14 6 3.4737 -1.2109 -0.0054 15 7 4.1074 -2.4377 -0.0112 16 6 3.3162 -3.6707 -0.0168 17 1 2.4062 -3.5255 0.5652 18 6 2.9539 -4.0452 -1.4587 19 6 1.9386 -5.1856 -1.4198 20 6 2.4307 -6.3030 -0.5376 21 6 1.8297 -7.5478 -0.6747 22 6 2.2268 -8.6085 0.1126 23 6 3.2317 -8.4324 1.0458 24 6 3.8319 -7.1979 1.1813 25 6 3.4344 -6.1287 0.3884 26 6 4.1356 -4.8103 0.5856 27 1 5.1113 -4.8468 0.1009 28 8 4.3128 -4.5753 1.9840 29 7 2.1524 -1.1512 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6364 2.1399 0.0004 34 1 4.1134 2.1487 -0.0001 35 1 6.3073 2.6544 -1.6053 36 1 5.0764 -2.4831 -0.0116 37 1 2.5183 -3.1830 -1.9636 38 1 3.8490 -4.3688 -1.9900 39 1 1.7862 -5.5657 -2.4299 40 1 0.9919 -4.8108 -1.0307 41 1 1.0446 -7.6862 -1.4033 42 1 1.7545 -9.5732 0.0005 43 1 3.5460 -9.2586 1.6662 44 1 4.6172 -7.0612 1.9101 45 1 4.8253 -5.2595 2.4360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158682858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:47 Heat of formation + Delta-G solvation = -18.989023 kcal Electronic energy + Delta-G solvation = -27259.100331 eV Core-core repulsion = 23625.472664 eV Total energy + Delta-G solvation = -3633.627667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37257 -40.30640 -38.22316 -36.83361 -35.98321 -34.95832 -32.64478 -32.28602 -31.54505 -30.28913 -29.47428 -28.51077 -25.72389 -24.45665 -23.79630 -22.92469 -22.49214 -22.23342 -20.46721 -19.10632 -18.74103 -17.93373 -17.63541 -16.83036 -16.69203 -16.21836 -15.95848 -15.56960 -15.43830 -15.15119 -15.06627 -14.73765 -14.36522 -14.23522 -14.02735 -13.80803 -13.65344 -13.37853 -13.22934 -13.14681 -13.10780 -12.89494 -12.64079 -12.54850 -12.35344 -12.19670 -12.13203 -12.03866 -11.64136 -11.38996 -11.07958 -11.07270 -10.58071 -9.91073 -9.71749 -9.69262 -9.50498 -8.59788 -8.26768 -6.10772 0.39736 0.46764 0.94065 1.25778 1.39656 1.49774 1.54483 2.23104 2.68932 2.79242 2.84709 3.28258 3.63102 3.73944 3.82714 3.92711 4.04733 4.10854 4.19610 4.25726 4.33539 4.39260 4.45483 4.54070 4.69397 4.73617 4.75195 4.81937 4.94339 4.95298 5.00770 5.05322 5.08871 5.13563 5.18555 5.19975 5.28283 5.34122 5.46623 5.56052 5.61040 5.70587 5.84386 5.92734 6.10547 6.16837 6.44571 6.77772 6.80188 6.86404 6.94064 7.17977 7.97454 8.42196 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.003898 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.167642 B = 7180.531474 C = 8637.526869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.023 3.977 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.006 4.006 6 C -0.480 4.480 7 H 0.077 0.923 8 C 0.033 3.967 9 N -0.836 5.836 10 Si 0.980 3.020 11 H -0.258 1.258 12 H -0.272 1.272 13 H -0.264 1.264 14 C 0.307 3.693 15 N -0.714 5.714 16 C 0.181 3.819 17 H 0.060 0.940 18 C -0.118 4.118 19 C -0.073 4.073 20 C -0.079 4.079 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.125 4.125 26 C 0.147 3.853 27 H 0.071 0.929 28 O -0.568 6.568 29 N -0.537 5.537 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.284 0.716 36 H 0.401 0.599 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -17.882 1.173 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C -0.226 4.226 4 C -0.171 4.171 5 C -0.013 4.013 6 C -0.511 4.511 7 H 0.095 0.905 8 C -0.180 4.180 9 N -0.463 5.463 10 Si 0.802 3.198 11 H -0.182 1.182 12 H -0.197 1.197 13 H -0.189 1.189 14 C 0.069 3.931 15 N -0.351 5.351 16 C 0.075 3.925 17 H 0.079 0.921 18 C -0.157 4.157 19 C -0.110 4.110 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.126 4.126 26 C 0.087 3.913 27 H 0.089 0.911 28 O -0.376 6.376 29 N -0.256 5.256 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.161 -17.981 0.910 18.478 hybrid contribution 2.012 1.017 0.119 2.258 sum -2.148 -16.964 1.029 17.130 Atomic orbital electron populations 1.20332 0.88337 1.02112 1.01740 1.20791 0.96701 0.87532 1.06144 1.21476 0.94804 0.98071 1.08227 1.21416 0.93229 0.97881 1.04526 1.18251 0.94793 0.90886 0.97412 1.19328 0.90998 1.03884 1.36913 0.90509 1.26630 1.05259 0.94102 0.92016 1.69872 1.40125 1.11232 1.25076 0.85279 0.76461 0.78760 0.79346 1.18220 1.19711 1.18892 1.18667 0.88301 0.86326 0.99848 1.43720 1.07337 1.00941 1.83054 1.20468 0.94023 0.82668 0.95322 0.92137 1.21841 0.99475 0.98101 0.96275 1.20444 0.98286 0.92581 0.99734 1.19815 0.95542 0.95806 0.96701 1.21421 1.00473 0.91997 1.00741 1.21466 0.97167 0.99591 0.95427 1.21376 0.96738 0.97299 0.99023 1.21262 1.00821 0.92738 0.99135 1.20213 0.98421 0.95608 0.98337 1.20701 0.97306 0.90891 0.82374 0.91104 1.86693 1.77920 1.52259 1.20744 1.66516 1.08077 1.30114 1.20891 0.91690 0.92223 0.90632 0.86675 0.87103 0.90552 0.76267 0.92747 0.91546 0.88638 0.90737 0.84214 0.83355 0.83396 0.84441 0.76252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.41 10.15 71.24 0.72 -1.69 16 2 C 0.02 1.07 6.79 42.64 0.29 1.36 16 3 C -0.20 -9.99 9.69 22.32 0.22 -9.78 16 4 C -0.14 -7.91 8.79 22.89 0.20 -7.71 16 5 C -0.01 -0.36 5.60 -21.06 -0.12 -0.47 16 6 C -0.48 -25.61 8.53 23.36 0.20 -25.41 16 7 H 0.08 3.88 6.68 -2.91 -0.02 3.86 16 8 C 0.03 1.67 5.24 85.25 0.45 2.11 16 9 N -0.84 -44.41 10.83 21.83 0.24 -44.17 16 10 Si 0.98 38.58 29.58 68.60 2.03 40.61 16 11 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 12 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 13 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 14 C 0.31 15.76 7.51 134.06 1.01 16.77 16 15 N -0.71 -31.24 5.13 -323.04 -1.66 -32.89 16 16 C 0.18 6.67 2.13 45.01 0.10 6.77 16 17 H 0.06 2.59 7.48 -2.39 -0.02 2.57 16 18 C -0.12 -3.82 5.58 30.61 0.17 -3.65 16 19 C -0.07 -1.88 5.67 29.74 0.17 -1.72 16 20 C -0.08 -1.94 5.74 -19.86 -0.11 -2.05 16 21 C -0.13 -2.52 9.61 22.36 0.21 -2.31 16 22 C -0.12 -1.97 10.05 22.20 0.22 -1.74 16 23 C -0.13 -2.12 10.05 22.20 0.22 -1.90 16 24 C -0.12 -2.45 9.20 22.36 0.21 -2.24 16 25 C -0.12 -3.20 5.57 -19.86 -0.11 -3.31 16 26 C 0.15 4.36 2.98 29.74 0.09 4.45 16 27 H 0.07 1.99 8.13 -2.38 -0.02 1.97 16 28 O -0.57 -17.35 13.15 -148.98 -1.96 -19.31 16 29 N -0.54 -26.67 9.07 -179.57 -1.63 -28.30 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.11 6.32 6.18 -2.91 -0.02 6.30 16 35 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 36 H 0.40 17.18 6.81 -92.71 -0.63 16.54 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 39 H 0.10 2.01 8.13 -2.39 -0.02 1.99 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.14 2.13 8.05 -2.91 -0.02 2.10 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 2.08 6.60 -2.91 -0.02 2.06 16 45 H 0.39 7.78 7.31 -74.06 -0.54 7.24 16 Total: -1.00 -67.48 364.53 1.01 -66.47 By element: Atomic # 1 Polarization: 50.26 SS G_CDS: -0.14 Total: 50.11 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 4.13 Total: -32.53 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.05 Total: -105.36 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.96 Total: -19.31 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -67.48 1.01 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158682858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.481 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds