Wall clock time and date at job start Tue Mar 31 2020 14:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31486 * 119.81484 * 2 1 4 4 C 1.32746 * 121.72788 * 180.02562 * 3 2 1 5 5 N 1.38363 * 119.43083 * 180.02562 * 4 3 2 6 6 C 1.47480 * 111.00636 * 95.96588 * 5 4 3 7 7 C 1.53510 * 87.93562 * 221.29867 * 6 5 4 8 8 O 1.42897 * 114.17131 * 139.66717 * 7 6 5 9 9 C 1.42906 * 113.99954 * 116.16049 * 8 7 6 10 10 C 1.50699 * 109.47210 * 180.02562 * 9 8 7 11 11 C 1.38236 * 119.99970 * 269.72830 * 10 9 8 12 12 C 1.38234 * 119.99527 * 179.76850 * 11 10 9 13 13 C 1.38227 * 120.00301 * 0.50277 * 12 11 10 14 14 C 1.38237 * 120.00192 * 359.74945 * 13 12 11 15 15 C 1.38229 * 119.99779 * 359.97438 * 14 13 12 16 16 C 1.47480 * 110.99735 * 359.97438 * 5 4 3 17 17 C 1.39714 * 121.13805 * 359.97438 * 4 3 2 18 18 C 1.36560 * 119.49559 * 0.02562 * 17 4 3 19 19 C 1.40758 * 119.81244 * 180.02562 * 2 1 3 20 20 C 1.41192 * 120.57103 * 359.95685 * 19 2 1 21 21 H 1.07997 * 120.00487 * 334.74878 * 20 19 2 22 22 C 1.39874 * 119.99758 * 154.75297 * 20 19 2 23 23 N 1.30897 * 120.00483 * 343.66852 * 22 20 19 24 24 Si 1.86808 * 119.99812 * 163.67563 * 22 20 19 25 25 H 1.48495 * 109.47294 * 59.99623 * 24 22 20 26 26 H 1.48496 * 109.46950 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46731 * 299.99530 * 24 22 20 28 28 H 1.09006 * 109.47205 * 269.97962 * 1 2 3 29 29 H 1.09003 * 109.47116 * 29.97219 * 1 2 3 30 30 H 1.08997 * 109.47640 * 149.97521 * 1 2 3 31 31 H 1.09001 * 113.47341 * 336.06643 * 6 5 4 32 32 H 1.08993 * 113.47385 * 106.53070 * 6 5 4 33 33 H 1.08994 * 114.17211 * 272.37658 * 7 6 5 34 34 H 1.08998 * 109.46870 * 299.99926 * 9 8 7 35 35 H 1.08997 * 109.46734 * 59.99802 * 9 8 7 36 36 H 1.08001 * 119.99974 * 359.97438 * 11 10 9 37 37 H 1.08004 * 119.99365 * 180.22574 * 12 11 10 38 38 H 1.08005 * 119.99826 * 179.72984 * 13 12 11 39 39 H 1.07999 * 120.00025 * 179.97438 * 14 13 12 40 40 H 1.07996 * 120.00148 * 179.97438 * 15 14 13 41 41 H 1.08997 * 113.47935 * 253.47186 * 16 5 4 42 42 H 1.09000 * 113.48008 * 23.88075 * 16 5 4 43 43 H 1.08001 * 120.24697 * 180.27421 * 17 4 3 44 44 H 1.07991 * 120.79542 * 179.97438 * 18 17 4 45 45 H 0.96996 * 120.00345 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0005 5 7 4.1267 2.4122 0.0001 6 6 4.4984 2.8141 1.3695 7 6 4.0503 4.2385 1.0136 8 8 3.3389 4.9061 2.0577 9 6 4.0039 6.0646 2.5656 10 6 3.1693 6.6853 3.6561 11 6 2.2314 7.6515 3.3435 12 6 1.4625 8.2174 4.3432 13 6 1.6387 7.8246 5.6567 14 6 2.5802 6.8621 5.9700 15 6 3.3451 6.2921 4.9697 16 6 3.1498 3.5170 0.0006 17 6 4.2494 0.0141 -0.0005 18 6 3.6199 -1.1977 -0.0006 19 6 2.2068 -1.2213 -0.0005 20 6 1.5090 -2.4488 -0.0002 21 1 0.5070 -2.5003 0.3994 22 6 2.1156 -3.5981 -0.5173 23 7 3.1741 -3.4929 -1.2801 24 14 1.4148 -5.2835 -0.1196 25 1 0.0151 -5.3656 -0.6085 26 1 2.2338 -6.3293 -0.7835 27 1 1.4391 -5.4954 1.3500 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 3.8863 2.3462 2.1405 32 1 5.5664 2.7325 1.5711 33 1 4.8295 4.8514 0.5606 34 1 4.9747 5.7782 2.9700 35 1 4.1441 6.7853 1.7600 36 1 2.0971 7.9619 2.3178 37 1 0.7272 8.9696 4.0985 38 1 1.0410 8.2699 6.4383 39 1 2.7181 6.5555 6.9964 40 1 4.0810 5.5405 5.2144 41 1 3.0752 4.0312 -0.9576 42 1 2.1773 3.2366 0.4052 43 1 5.3281 0.0669 0.0035 44 1 4.1881 -2.1160 -0.0010 45 1 3.5945 -4.2899 -1.6390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166629252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:19 Heat of formation + Delta-G solvation = 38.884814 kcal Electronic energy + Delta-G solvation = -25911.356288 eV Core-core repulsion = 22280.238219 eV Total energy + Delta-G solvation = -3631.118069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86443 -40.26178 -39.66847 -37.75724 -35.81222 -33.60459 -32.84709 -32.33409 -31.78727 -29.26427 -28.81522 -26.96181 -26.86427 -25.58022 -23.47457 -23.05480 -22.27043 -22.14974 -20.96671 -19.22567 -18.57834 -17.89214 -17.54217 -16.98772 -16.79235 -16.51140 -16.12515 -15.82881 -15.50269 -15.43176 -14.91734 -14.71429 -14.34664 -14.29771 -14.18318 -13.84426 -13.73444 -13.55743 -13.38426 -13.30924 -13.06753 -12.85170 -12.77514 -12.66662 -12.24040 -12.18829 -11.88867 -11.83468 -11.80453 -11.64346 -11.19789 -10.57356 -10.44888 -10.20680 -9.94820 -9.81975 -9.75587 -9.10836 -8.68751 -6.37892 0.34086 0.50279 0.68327 1.00215 1.38964 1.49461 1.52417 2.17402 2.50166 2.63768 3.02529 3.28953 3.37634 3.59926 3.79270 3.93212 3.96877 4.05905 4.15257 4.26980 4.31923 4.37367 4.45221 4.49038 4.56851 4.59027 4.64797 4.68596 4.72979 4.78089 4.86801 4.93961 5.02379 5.05713 5.08648 5.12314 5.13111 5.15953 5.30278 5.47246 5.54475 5.55207 5.60948 5.67750 5.87290 6.01086 6.10159 6.27482 6.29406 6.55228 6.75013 6.84712 7.64166 8.23514 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.002345 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.102353 B =11935.196288 C =12474.083768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.007 4.007 3 N -0.492 5.492 4 C 0.120 3.880 5 N -0.415 5.415 6 C -0.007 4.007 7 C 0.081 3.919 8 O -0.385 6.385 9 C 0.097 3.903 10 C -0.109 4.109 11 C -0.113 4.113 12 C -0.132 4.132 13 C -0.122 4.122 14 C -0.133 4.133 15 C -0.116 4.116 16 C 0.010 3.990 17 C -0.139 4.139 18 C -0.145 4.145 19 C 0.036 3.964 20 C -0.467 4.467 21 H 0.092 0.908 22 C 0.033 3.967 23 N -0.820 5.820 24 Si 0.987 3.013 25 H -0.255 1.255 26 H -0.269 1.269 27 H -0.260 1.260 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 16.892 9.778 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.150 4.150 3 N -0.204 5.204 4 C -0.110 4.110 5 N -0.137 5.137 6 C -0.135 4.135 7 C 0.022 3.978 8 O -0.303 6.303 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.131 4.131 12 C -0.149 4.149 13 C -0.140 4.140 14 C -0.151 4.151 15 C -0.134 4.134 16 C -0.119 4.119 17 C -0.161 4.161 18 C -0.171 4.171 19 C 0.031 3.969 20 C -0.496 4.496 21 H 0.110 0.890 22 C -0.183 4.183 23 N -0.445 5.445 24 Si 0.807 3.193 25 H -0.179 1.179 26 H -0.194 1.194 27 H -0.184 1.184 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.145 0.855 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.138 17.402 9.165 19.700 hybrid contribution 0.087 -1.840 0.285 1.864 sum 1.225 15.562 9.450 18.248 Atomic orbital electron populations 1.20224 0.88868 1.01650 1.01245 1.21390 0.96702 0.87633 1.09255 1.66791 1.09210 1.30934 1.13424 1.19597 0.88261 0.91593 1.11553 1.66349 1.26296 0.99263 1.21750 1.24341 1.02457 0.96074 0.90599 1.23729 0.94825 0.91339 0.87892 1.88056 1.47301 1.41915 1.53049 1.21568 0.94495 0.86985 0.94861 1.19837 0.98972 0.97810 0.94302 1.21332 0.94997 0.96386 1.00377 1.21478 0.99754 1.00662 0.93044 1.21550 0.97999 0.97193 0.97219 1.21460 0.96357 0.97230 1.00065 1.21314 1.00117 0.99316 0.92670 1.23890 0.97110 0.91085 0.99834 1.21016 0.99453 0.92271 1.03325 1.21346 0.95044 0.96716 1.03987 1.18679 0.92883 0.94226 0.91100 1.19772 1.02251 0.92552 1.35035 0.89027 1.26889 0.94381 1.05344 0.91664 1.69869 1.18665 1.33698 1.22230 0.85165 0.79420 0.75015 0.79701 1.17909 1.19354 1.18385 0.92100 0.92358 0.91265 0.93383 0.87868 0.85221 0.91147 0.90561 0.85018 0.83865 0.83729 0.84149 0.85543 0.89243 0.90627 0.86514 0.86474 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.66 9.58 71.24 0.68 -1.98 16 2 C -0.01 -0.37 6.86 43.23 0.30 -0.08 16 3 N -0.49 -24.79 8.06 -179.36 -1.44 -26.23 16 4 C 0.12 5.77 5.85 133.32 0.78 6.55 16 5 N -0.42 -16.57 6.39 -731.68 -4.67 -21.25 16 6 C -0.01 -0.23 7.48 83.60 0.63 0.40 16 7 C 0.08 2.27 4.65 30.95 0.14 2.42 16 8 O -0.38 -11.09 10.38 -148.98 -1.55 -12.63 16 9 C 0.10 2.02 5.91 71.24 0.42 2.44 16 10 C -0.11 -2.38 5.51 -19.86 -0.11 -2.49 16 11 C -0.11 -2.23 9.70 22.27 0.22 -2.02 16 12 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 13 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 14 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 15 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 16 C 0.01 0.34 7.22 83.62 0.60 0.95 16 17 C -0.14 -6.86 9.91 22.23 0.22 -6.64 16 18 C -0.14 -7.73 8.73 22.64 0.20 -7.53 16 19 C 0.04 1.92 5.58 -21.18 -0.12 1.81 16 20 C -0.47 -24.01 8.14 23.39 0.19 -23.82 16 21 H 0.09 4.42 6.86 -2.91 -0.02 4.40 16 22 C 0.03 1.61 5.19 85.23 0.44 2.05 16 23 N -0.82 -41.53 10.95 21.82 0.24 -41.29 16 24 Si 0.99 36.33 29.59 68.60 2.03 38.36 16 25 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 26 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 27 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 28 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.89 6.76 -2.39 -0.02 2.87 16 31 H 0.05 1.88 7.89 -2.39 -0.02 1.86 16 32 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.13 2.79 7.88 -2.39 -0.02 2.77 16 34 H 0.07 1.26 8.08 -2.39 -0.02 1.25 16 35 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.08 3.18 6.63 -2.39 -0.02 3.16 16 43 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 44 H 0.12 6.36 6.26 -2.92 -0.02 6.34 16 45 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 Total: -1.00 -64.04 374.49 1.07 -62.97 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.99 Total: 36.11 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 5.48 Total: -36.05 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -5.88 Total: -88.77 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.55 Total: -12.63 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -64.04 1.07 -62.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166629252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.859 kcal (2) G-P(sol) polarization free energy of solvation -64.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds