Wall clock time and date at job start Tue Mar 31 2020 13:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48498 * 109.47058 * 240.00104 * 3 2 1 5 5 H 1.48500 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46770 * 120.00074 * 3 2 1 7 7 C 1.37883 * 119.99654 * 180.02562 * 2 1 3 8 8 C 1.51264 * 120.85095 * 359.97438 * 7 2 1 9 9 C 1.53226 * 108.53702 * 231.32932 * 8 7 2 10 10 C 1.52956 * 109.40395 * 305.37142 * 9 8 7 11 11 H 1.09006 * 109.41692 * 303.49125 * 10 9 8 12 12 N 1.46500 * 109.41777 * 183.63452 * 10 9 8 13 13 C 1.39699 * 120.00674 * 154.85781 * 12 10 9 14 14 C 1.38981 * 120.45840 * 0.02562 * 13 12 10 15 15 N 1.31780 * 120.78033 * 180.02562 * 14 13 12 16 16 C 1.31834 * 121.85827 * 359.97438 * 15 14 13 17 17 C 1.38783 * 120.84472 * 359.97271 * 16 15 14 18 18 O 1.35889 * 120.43763 * 180.02562 * 17 16 15 19 19 C 1.35892 * 117.99951 * 247.42902 * 18 17 16 20 20 C 1.38755 * 120.05526 * 5.82222 * 19 18 17 21 21 C 1.38137 * 119.93716 * 179.77384 * 20 19 18 22 22 C 1.38273 * 120.05917 * 0.49975 * 21 20 19 23 23 C 1.38275 * 120.11591 * 359.75447 * 22 21 20 24 24 C 1.38134 * 120.05518 * 359.97438 * 23 22 21 25 25 C 1.39032 * 119.12469 * 359.79560 * 17 16 15 26 26 C 1.52957 * 109.81684 * 63.59751 * 10 9 8 27 27 C 1.51272 * 120.84715 * 179.97438 * 7 2 1 28 28 H 0.97003 * 119.99946 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.62696 * 111.61527 * 8 7 2 30 30 H 1.09000 * 109.62417 * 351.04202 * 8 7 2 31 31 H 1.09007 * 109.48283 * 185.39257 * 9 8 7 32 32 H 1.08994 * 109.49525 * 65.36118 * 9 8 7 33 33 H 0.97002 * 119.99510 * 334.86498 * 12 10 9 34 34 H 1.08003 * 119.61088 * 0.02562 * 14 13 12 35 35 H 1.07998 * 119.57864 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.02984 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.96991 * 180.23046 * 21 20 19 38 38 H 1.08004 * 119.94291 * 179.72715 * 22 21 20 39 39 H 1.07999 * 119.96795 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.02509 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.83739 * 180.23223 * 25 17 16 42 42 H 1.09001 * 109.48108 * 56.38306 * 26 10 9 43 43 H 1.09005 * 109.48435 * 176.41657 * 26 10 9 44 44 H 1.08999 * 109.62511 * 248.38681 * 27 7 2 45 45 H 1.08999 * 109.62243 * 8.76504 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 6 1.2676 -2.5152 -0.0005 9 6 1.8235 -3.3831 1.1333 10 6 3.3404 -3.5075 0.9811 11 1 3.5738 -3.9124 -0.0037 12 7 3.8613 -4.4071 2.0133 13 6 5.0595 -5.0937 1.8019 14 6 5.7654 -4.9299 0.6160 15 7 6.8960 -5.5747 0.4097 16 6 7.4034 -6.3948 1.3086 17 6 6.7590 -6.6111 2.5186 18 8 7.2897 -7.4578 3.4395 19 6 6.6228 -8.6118 3.7041 20 6 5.5042 -8.9548 2.9582 21 6 4.8309 -10.1308 3.2262 22 6 5.2646 -10.9608 4.2435 23 6 6.3760 -10.6187 4.9918 24 6 7.0562 -9.4466 4.7242 25 6 5.5658 -5.9464 2.7781 26 6 3.9913 -2.1316 1.1323 27 6 3.5170 -1.2166 -0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 1.4192 -3.0190 -0.9552 30 1 0.2037 -2.3409 0.1598 31 1 1.3711 -4.3738 1.0881 32 1 1.5911 -2.9208 2.0926 33 1 3.3741 -4.5262 2.8436 34 1 5.3830 -4.2663 -0.1455 35 1 8.3329 -6.9041 1.1012 36 1 5.1628 -8.3049 2.1662 37 1 3.9624 -10.4001 2.6435 38 1 4.7342 -11.8777 4.4544 39 1 6.7124 -11.2686 5.7861 40 1 7.9239 -9.1797 5.3093 41 1 5.0431 -6.0913 3.7119 42 1 3.7077 -1.6987 2.0916 43 1 5.0755 -2.2353 1.0865 44 1 3.8771 -1.5999 -0.9558 45 1 3.8982 -0.2075 0.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:51 Heat of formation + Delta-G solvation = 8.470379 kcal Electronic energy + Delta-G solvation = -26375.092513 eV Core-core repulsion = 22742.655574 eV Total energy + Delta-G solvation = -3632.436938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.19132 -40.66728 -39.20018 -38.45273 -36.17287 -33.95845 -32.66079 -31.76383 -31.63493 -31.07041 -30.16478 -28.44250 -25.31875 -24.56378 -23.78705 -23.50378 -23.21477 -22.31598 -21.15928 -19.65058 -18.66050 -18.13305 -17.88826 -17.56515 -16.89022 -16.71476 -16.43261 -16.19772 -15.56631 -15.20929 -15.08007 -15.02801 -14.59032 -14.54014 -14.38152 -14.22222 -14.09588 -14.00307 -13.57518 -13.26160 -12.88497 -12.76539 -12.68597 -12.55824 -12.49958 -12.05767 -11.99074 -11.94700 -11.70101 -11.39610 -10.88499 -10.73528 -10.57526 -10.54152 -10.33318 -9.98587 -9.24399 -8.57671 -8.18578 -6.11888 -0.12804 0.32085 0.37897 0.43384 1.38184 1.40457 1.47047 1.97970 2.34466 2.39271 2.77509 2.82879 3.11019 3.61786 3.78071 3.81048 3.86193 3.93527 3.96484 4.10172 4.16293 4.27124 4.29327 4.44175 4.47892 4.51269 4.64805 4.70503 4.85815 4.94170 4.96143 5.01351 5.05555 5.06369 5.10942 5.22455 5.25505 5.29804 5.38198 5.46714 5.57256 5.57574 5.62981 5.75194 5.82628 5.89240 6.16457 6.32778 6.42839 6.68122 6.94823 6.98773 7.46263 8.92133 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024106 B = 0.002543 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.234378 B =11009.342607 C =11648.351718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.498 4.498 8 C 0.009 3.991 9 C -0.101 4.101 10 C 0.171 3.829 11 H 0.075 0.925 12 N -0.720 5.720 13 C 0.197 3.803 14 C 0.011 3.989 15 N -0.438 5.438 16 C 0.020 3.980 17 C 0.087 3.913 18 O -0.262 6.262 19 C 0.098 3.902 20 C -0.205 4.205 21 C -0.091 4.091 22 C -0.152 4.152 23 C -0.082 4.082 24 C -0.154 4.154 25 C -0.185 4.185 26 C -0.112 4.112 27 C -0.014 4.014 28 H 0.262 0.738 29 H 0.005 0.995 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.406 0.594 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.027 0.973 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.123 -20.272 9.696 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.517 4.517 8 C -0.029 4.029 9 C -0.140 4.140 10 C 0.066 3.934 11 H 0.093 0.907 12 N -0.346 5.346 13 C 0.088 3.912 14 C -0.153 4.153 15 N -0.147 5.147 16 C -0.139 4.139 17 C 0.042 3.958 18 O -0.173 6.173 19 C 0.056 3.944 20 C -0.224 4.224 21 C -0.109 4.109 22 C -0.170 4.170 23 C -0.100 4.100 24 C -0.172 4.172 25 C -0.216 4.216 26 C -0.151 4.151 27 C -0.052 4.052 28 H 0.072 0.928 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.243 0.757 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.178 0.822 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.506 -19.861 8.868 25.090 hybrid contribution -0.852 1.361 0.813 1.800 sum 11.654 -18.500 9.681 23.912 Atomic orbital electron populations 1.69945 1.07520 1.27470 1.51998 1.25543 0.95292 1.01540 0.95040 0.85879 0.78369 0.79855 0.79385 1.19260 1.22290 1.19269 1.20630 0.91100 0.91880 1.48136 1.19301 0.97161 0.93297 0.93180 1.21673 0.93436 0.98727 1.00129 1.20759 0.93611 0.88495 0.90519 0.90738 1.45007 1.21718 1.46779 1.21123 1.18763 0.87667 0.90920 0.93831 1.22609 0.92817 1.02929 0.96898 1.67600 1.10725 1.05238 1.31107 1.22739 1.02629 1.00374 0.88158 1.19481 0.94048 0.92635 0.89632 1.84323 1.48732 1.28412 1.55787 1.19450 0.92849 0.85796 0.96316 1.21398 0.97973 1.00513 1.02525 1.21264 0.99305 0.92900 0.97472 1.21495 0.98019 1.01108 0.96416 1.21368 0.94283 0.95072 0.99260 1.20742 1.03309 0.95459 0.97697 1.21344 0.98186 1.01288 1.00747 1.21896 0.98109 0.95671 0.99459 1.19641 0.94703 0.95550 0.95316 0.92835 0.97630 0.95215 0.92488 0.93366 0.75741 0.82339 0.81084 0.86576 0.84319 0.83200 0.82212 0.83893 0.83579 0.93492 0.92872 0.95422 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.24 12.73 21.45 0.27 -52.97 16 2 C 0.02 1.30 5.46 84.66 0.46 1.76 16 3 Si 0.94 42.76 26.80 68.60 1.84 44.60 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.50 -24.89 5.51 -16.17 -0.09 -24.98 16 8 C 0.01 0.40 5.97 30.10 0.18 0.58 16 9 C -0.10 -3.74 5.40 30.66 0.17 -3.58 16 10 C 0.17 5.55 2.06 44.96 0.09 5.65 16 11 H 0.07 2.45 6.50 -2.38 -0.02 2.44 16 12 N -0.72 -19.33 5.25 -318.80 -1.67 -21.00 16 13 C 0.20 5.30 6.65 38.29 0.25 5.55 16 14 C 0.01 0.32 10.02 84.88 0.85 1.17 16 15 N -0.44 -12.74 10.35 -194.85 -2.02 -14.76 16 16 C 0.02 0.53 11.13 84.82 0.94 1.47 16 17 C 0.09 2.20 4.73 22.59 0.11 2.30 16 18 O -0.26 -6.37 10.02 -35.65 -0.36 -6.73 16 19 C 0.10 2.13 6.55 22.52 0.15 2.28 16 20 C -0.21 -4.35 8.81 22.37 0.20 -4.15 16 21 C -0.09 -1.54 10.04 22.25 0.22 -1.32 16 22 C -0.15 -2.03 10.04 22.29 0.22 -1.81 16 23 C -0.08 -1.06 10.04 22.25 0.22 -0.84 16 24 C -0.15 -2.62 9.99 22.37 0.22 -2.40 16 25 C -0.18 -4.56 8.39 22.68 0.19 -4.37 16 26 C -0.11 -4.06 5.44 30.64 0.17 -3.89 16 27 C -0.01 -0.60 5.59 30.09 0.17 -0.43 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.03 1.56 7.07 -2.39 -0.02 1.54 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 9.63 8.63 -92.71 -0.80 8.84 16 34 H 0.16 4.62 6.20 -2.91 -0.02 4.60 16 35 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.12 2.71 6.19 -2.91 -0.02 2.69 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.76 7.78 -2.38 -0.02 1.74 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.02 1.04 5.17 -2.39 -0.01 1.03 16 Total: -1.00 -59.67 363.22 3.01 -56.66 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.21 Total: 21.19 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.73 Total: -26.99 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -3.42 Total: -88.73 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.36 Total: -6.73 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.84 Total: 44.60 kcal Total: -59.67 3.01 -56.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.126 kcal (2) G-P(sol) polarization free energy of solvation -59.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds