Wall clock time and date at job start Tue Mar 31 2020 14:28:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.36355 * 119.92361 * 2 1
4 4 C 1.40866 * 119.83834 * 180.29712 * 3 2 1
5 5 C 1.41136 * 120.15683 * 179.73834 * 4 3 2
6 6 H 1.07997 * 120.00111 * 328.71591 * 5 4 3
7 7 C 1.39871 * 119.99997 * 148.71306 * 5 4 3
8 8 N 1.30899 * 120.00126 * 167.72909 * 7 5 4
9 9 Si 1.86801 * 120.00033 * 347.72638 * 7 5 4
10 10 H 1.48508 * 109.46861 * 92.58418 * 9 7 5
11 11 H 1.48494 * 109.47219 * 212.58231 * 9 7 5
12 12 H 1.48498 * 109.47220 * 332.58641 * 9 7 5
13 13 C 1.40906 * 119.68776 * 359.71129 * 4 3 2
14 14 C 1.36321 * 119.83618 * 0.02562 * 13 4 3
15 15 C 1.39548 * 119.91726 * 179.75937 * 2 1 3
16 16 N 1.38867 * 119.84167 * 359.97438 * 15 2 1
17 17 C 1.46497 * 119.99569 * 179.72864 * 16 15 2
18 18 C 1.53007 * 109.46659 * 179.97438 * 17 16 15
19 19 C 1.50701 * 109.47095 * 179.97438 * 18 17 16
20 20 O 1.21286 * 119.99829 * 0.02562 * 19 18 17
21 21 N 1.34772 * 119.99682 * 179.97438 * 19 18 17
22 22 C 1.39927 * 119.99756 * 184.69643 * 21 19 18
23 23 C 1.38880 * 120.07045 * 144.76270 * 22 21 19
24 24 C 1.38109 * 119.92638 * 180.23621 * 23 22 21
25 25 C 1.38275 * 120.07374 * 359.46802 * 24 23 22
26 26 C 1.38284 * 120.14350 * 0.55434 * 25 24 23
27 27 C 1.38118 * 120.06560 * 359.70054 * 26 25 24
28 28 H 1.08999 * 109.47315 * 270.24537 * 1 2 3
29 29 H 1.09006 * 109.46991 * 30.24165 * 1 2 3
30 30 H 1.09009 * 109.47543 * 150.23674 * 1 2 3
31 31 H 1.08003 * 120.08134 * 0.02562 * 3 2 1
32 32 H 0.96998 * 120.00405 * 180.02562 * 8 7 5
33 33 H 1.08001 * 120.08077 * 179.97438 * 13 4 3
34 34 H 1.08000 * 119.91903 * 179.97438 * 14 13 4
35 35 H 0.96990 * 119.99868 * 359.72706 * 16 15 2
36 36 H 1.09001 * 109.47653 * 60.00407 * 17 16 15
37 37 H 1.09001 * 109.47546 * 299.99578 * 17 16 15
38 38 H 1.08998 * 109.47199 * 60.00074 * 18 17 16
39 39 H 1.08995 * 109.47474 * 299.99864 * 18 17 16
40 40 H 0.97001 * 120.00820 * 4.70261 * 21 19 18
41 41 H 1.07994 * 120.03061 * 359.95500 * 23 22 21
42 42 H 1.08000 * 119.95901 * 179.72739 * 24 23 22
43 43 H 1.08000 * 119.93458 * 180.25818 * 25 24 23
44 44 H 1.07991 * 119.97034 * 179.72206 * 26 25 24
45 45 H 1.08001 * 120.03251 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1871 1.1818 0.0000
4 6 3.5958 1.1797 -0.0063
5 6 4.3066 2.3990 -0.0120
6 1 3.8859 3.2671 -0.4975
7 6 5.5559 2.4830 0.6113
8 7 6.3207 3.5255 0.4067
9 14 6.1331 1.1077 1.7359
10 1 6.9283 0.1283 0.9522
11 1 6.9752 1.6748 2.8196
12 1 4.9548 0.4264 2.3297
13 6 4.2918 -0.0454 -0.0065
14 6 3.5987 -1.2193 -0.0010
15 6 2.2029 -1.2095 0.0051
16 7 1.5035 -2.4092 0.0107
17 6 2.2308 -3.6809 0.0100
18 6 1.2316 -4.8397 0.0175
19 6 1.9796 -6.1480 0.0162
20 8 3.1924 -6.1530 0.0103
21 7 1.3008 -7.3122 0.0225
22 6 1.9923 -8.5247 0.1205
23 6 1.4400 -9.5857 0.8262
24 6 2.1274 -10.7795 0.9252
25 6 3.3591 -10.9227 0.3133
26 6 3.9120 -9.8681 -0.3897
27 6 3.2321 -8.6698 -0.4880
28 1 -0.3634 0.0044 1.0276
29 1 -0.3633 0.8879 -0.5176
30 1 -0.3634 -0.8921 -0.5102
31 1 1.6472 2.1172 0.0004
32 1 7.1872 3.5837 0.8386
33 1 5.3718 -0.0545 -0.0117
34 1 4.1309 -2.1591 -0.0015
35 1 0.5337 -2.4051 0.0150
36 1 2.8611 -3.7396 0.8973
37 1 2.8532 -3.7432 -0.8827
38 1 0.6009 -4.7813 -0.8696
39 1 0.6095 -4.7773 0.9103
40 1 0.3328 -7.3098 -0.0410
41 1 0.4762 -9.4758 1.3009
42 1 1.7004 -11.6035 1.4775
43 1 3.8927 -11.8586 0.3887
44 1 4.8762 -9.9815 -0.8627
45 1 3.6646 -7.8464 -1.0369
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001168982548.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:28:03
Heat of formation + Delta-G solvation = 12.192260 kcal
Electronic energy + Delta-G solvation = -25459.316685 eV
Core-core repulsion = 21827.041140 eV
Total energy + Delta-G solvation = -3632.275545 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.86332 -38.89192 -38.43987 -35.57996 -35.06989 -33.45993 -31.90681 -31.32959
-31.19550 -29.74510 -28.50374 -26.25142 -24.88530 -23.55030 -23.09184 -22.37010
-20.82214 -20.23952 -19.96275 -18.21749 -17.40722 -17.01889 -16.62084 -16.37559
-16.09546 -15.20523 -14.96036 -14.89928 -14.59431 -14.09716 -13.90558 -13.63570
-13.53528 -13.19577 -13.14171 -12.95555 -12.48630 -12.36094 -12.32184 -12.06027
-11.93265 -11.71773 -11.59325 -11.57588 -11.32921 -10.70052 -10.67526 -10.52356
-10.15231 -10.09732 -9.79463 -9.49205 -9.23422 -9.13447 -8.69816 -8.49197
-7.59572 -6.70394 -6.55415 -4.15410 0.94238 1.09859 2.26685 2.62564
2.68587 2.81284 3.24428 3.34131 3.45062 3.50898 4.02310 4.14722
4.47746 4.58665 4.64382 4.65265 4.82499 4.85551 4.86534 5.09279
5.18873 5.25874 5.30232 5.50450 5.70667 5.74712 5.83565 5.94943
5.97092 6.01684 6.03185 6.13518 6.17224 6.18286 6.26114 6.33238
6.52703 6.71296 6.72246 6.96653 6.98489 7.16265 7.27635 7.47299
7.64662 7.76693 7.96433 8.06815 8.28545 8.49848 8.57170 8.86078
9.02627 10.34595
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.018246 B = 0.002312 C = 0.002098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.205922 B =12107.086714 C =13343.842379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C -0.120 4.120
3 C -0.165 4.165
4 C 0.061 3.939
5 C -0.452 4.452
6 H 0.086 0.914
7 C 0.080 3.920
8 N -0.830 5.830
9 Si 0.910 3.090
10 H -0.274 1.274
11 H -0.296 1.296
12 H -0.245 1.245
13 C -0.199 4.199
14 C -0.141 4.141
15 C 0.097 3.903
16 N -0.762 5.762
17 C 0.151 3.849
18 C -0.149 4.149
19 C 0.518 3.482
20 O -0.511 6.511
21 N -0.678 5.678
22 C 0.145 3.855
23 C -0.147 4.147
24 C -0.104 4.104
25 C -0.137 4.137
26 C -0.102 4.102
27 C -0.121 4.121
28 H 0.053 0.947
29 H 0.056 0.944
30 H 0.047 0.953
31 H 0.101 0.899
32 H 0.280 0.720
33 H 0.100 0.900
34 H 0.096 0.904
35 H 0.386 0.614
36 H 0.057 0.943
37 H 0.058 0.942
38 H 0.101 0.899
39 H 0.101 0.899
40 H 0.411 0.589
41 H 0.124 0.876
42 H 0.125 0.875
43 H 0.122 0.878
44 H 0.125 0.875
45 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.303 -25.963 0.270 28.732
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.124 4.124
3 C -0.185 4.185
4 C 0.057 3.943
5 C -0.483 4.483
6 H 0.104 0.896
7 C -0.135 4.135
8 N -0.457 5.457
9 Si 0.739 3.261
10 H -0.201 1.201
11 H -0.225 1.225
12 H -0.169 1.169
13 C -0.218 4.218
14 C -0.163 4.163
15 C 0.000 4.000
16 N -0.399 5.399
17 C 0.025 3.975
18 C -0.189 4.189
19 C 0.306 3.694
20 O -0.385 6.385
21 N -0.324 5.324
22 C 0.051 3.949
23 C -0.168 4.168
24 C -0.122 4.122
25 C -0.156 4.156
26 C -0.121 4.121
27 C -0.141 4.141
28 H 0.072 0.928
29 H 0.075 0.925
30 H 0.066 0.934
31 H 0.119 0.881
32 H 0.090 0.910
33 H 0.118 0.882
34 H 0.114 0.886
35 H 0.220 0.780
36 H 0.076 0.924
37 H 0.076 0.924
38 H 0.119 0.881
39 H 0.119 0.881
40 H 0.247 0.753
41 H 0.142 0.858
42 H 0.143 0.857
43 H 0.140 0.860
44 H 0.143 0.857
45 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -11.059 -25.793 0.300 28.065
hybrid contribution -0.378 -0.571 0.507 0.853
sum -11.438 -26.364 0.808 28.749
Atomic orbital electron populations
1.20524 0.93516 1.00815 1.00546 1.18787 0.93829 0.92226 1.07547
1.20509 0.93867 0.95255 1.08891 1.17658 0.91805 0.92681 0.92145
1.19272 1.00629 0.96916 1.31473 0.89618 1.26045 0.95217 0.96305
0.95947 1.69691 1.09549 1.29286 1.37186 0.86364 0.79511 0.80619
0.79639 1.20059 1.22455 1.16864 1.20654 0.98084 0.92654 1.10451
1.19989 0.91908 0.97291 1.07121 1.17039 0.90632 0.84381 1.07935
1.43852 1.06626 1.01948 1.87488 1.20718 0.93052 0.81695 1.02031
1.21813 1.00205 0.91798 1.05100 1.20786 0.88332 0.85157 0.75130
1.90752 1.13904 1.87197 1.46638 1.43583 1.10750 1.04308 1.73754
1.17800 0.94019 0.85671 0.97436 1.20913 1.01513 0.93709 1.00634
1.20937 0.95024 0.96931 0.99329 1.21163 0.96145 0.99130 0.99171
1.21120 0.99747 0.92602 0.98593 1.21369 0.94738 0.98394 0.99621
0.92832 0.92464 0.93441 0.88090 0.90967 0.88239 0.88612 0.77996
0.92437 0.92373 0.88073 0.88053 0.75307 0.85770 0.85736 0.86004
0.85659 0.84237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.50 9.55 36.00 0.34 -1.16 16
2 C -0.12 -2.46 5.86 -104.82 -0.61 -3.07 16
3 C -0.17 -3.87 9.37 -39.27 -0.37 -4.24 16
4 C 0.06 1.58 5.13 -106.79 -0.55 1.04 16
5 C -0.45 -12.76 9.59 -37.87 -0.36 -13.12 16
6 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16
7 C 0.08 2.22 5.47 -17.34 -0.09 2.12 16
8 N -0.83 -23.43 13.93 55.54 0.77 -22.66 16
9 Si 0.91 22.18 24.40 -169.99 -4.15 18.04 16
10 H -0.27 -6.53 6.66 56.52 0.38 -6.15 16
11 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.25 -6.09 6.67 56.52 0.38 -5.72 16
13 C -0.20 -4.99 6.93 -39.26 -0.27 -5.26 16
14 C -0.14 -3.17 9.23 -39.77 -0.37 -3.54 16
15 C 0.10 1.97 6.65 -83.68 -0.56 1.41 16
16 N -0.76 -11.77 5.60 -58.49 -0.33 -12.10 16
17 C 0.15 2.09 4.18 -4.04 -0.02 2.07 16
18 C -0.15 -1.33 5.82 -27.88 -0.16 -1.49 16
19 C 0.52 5.53 7.67 -10.99 -0.08 5.45 16
20 O -0.51 -7.59 13.43 5.55 0.07 -7.52 16
21 N -0.68 -5.45 5.34 -9.86 -0.05 -5.51 16
22 C 0.14 1.39 6.30 -83.69 -0.53 0.86 16
23 C -0.15 -1.14 9.97 -39.39 -0.39 -1.54 16
24 C -0.10 -0.76 10.04 -39.62 -0.40 -1.15 16
25 C -0.14 -1.07 10.04 -39.55 -0.40 -1.47 16
26 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16
27 C -0.12 -1.32 8.70 -39.39 -0.34 -1.66 16
28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16
30 H 0.05 0.62 6.54 -51.92 -0.34 0.28 16
31 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16
32 H 0.28 7.23 8.30 -40.82 -0.34 6.90 16
33 H 0.10 2.53 4.41 -52.49 -0.23 2.30 16
34 H 0.10 2.00 6.68 -52.49 -0.35 1.65 16
35 H 0.39 4.95 6.43 -40.82 -0.26 4.69 16
36 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16
37 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16
38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.41 1.81 8.82 -40.82 -0.36 1.45 16
41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16
42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16
43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16
44 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16
45 H 0.14 1.74 6.24 -52.49 -0.33 1.41 16
LS Contribution 367.69 15.07 5.54 5.54
Total: -1.00 -32.81 367.69 -9.80 -42.61
By element:
Atomic # 1 Polarization: 13.76 SS G_CDS: -6.10 Total: 7.66 kcal
Atomic # 6 Polarization: -20.51 SS G_CDS: -5.56 Total: -26.07 kcal
Atomic # 7 Polarization: -40.66 SS G_CDS: 0.39 Total: -40.27 kcal
Atomic # 8 Polarization: -7.59 SS G_CDS: 0.07 Total: -7.52 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -4.15 Total: 18.04 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -32.81 -9.80 -42.61 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168982548.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.798 kcal
(2) G-P(sol) polarization free energy of solvation -32.811 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds