Wall clock time and date at job start Tue Mar 31 2020 14:28:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.36355 * 119.92361 * 2 1
4 4 C 1.40866 * 119.83834 * 180.29712 * 3 2 1
5 5 C 1.41136 * 120.15683 * 179.73834 * 4 3 2
6 6 H 1.07997 * 120.00111 * 328.71591 * 5 4 3
7 7 C 1.39871 * 119.99997 * 148.71306 * 5 4 3
8 8 N 1.30899 * 120.00126 * 167.72909 * 7 5 4
9 9 Si 1.86801 * 120.00033 * 347.72638 * 7 5 4
10 10 H 1.48508 * 109.46861 * 92.58418 * 9 7 5
11 11 H 1.48494 * 109.47219 * 212.58231 * 9 7 5
12 12 H 1.48498 * 109.47220 * 332.58641 * 9 7 5
13 13 C 1.40906 * 119.68776 * 359.71129 * 4 3 2
14 14 C 1.36321 * 119.83618 * 0.02562 * 13 4 3
15 15 C 1.39548 * 119.91726 * 179.75937 * 2 1 3
16 16 N 1.38867 * 119.84167 * 359.97438 * 15 2 1
17 17 C 1.46497 * 119.99569 * 179.72864 * 16 15 2
18 18 C 1.53007 * 109.46659 * 179.97438 * 17 16 15
19 19 C 1.50701 * 109.47095 * 179.97438 * 18 17 16
20 20 O 1.21286 * 119.99829 * 0.02562 * 19 18 17
21 21 N 1.34772 * 119.99682 * 179.97438 * 19 18 17
22 22 C 1.39927 * 119.99756 * 184.69643 * 21 19 18
23 23 C 1.38880 * 120.07045 * 144.76270 * 22 21 19
24 24 C 1.38109 * 119.92638 * 180.23621 * 23 22 21
25 25 C 1.38275 * 120.07374 * 359.46802 * 24 23 22
26 26 C 1.38284 * 120.14350 * 0.55434 * 25 24 23
27 27 C 1.38118 * 120.06560 * 359.70054 * 26 25 24
28 28 H 1.08999 * 109.47315 * 270.24537 * 1 2 3
29 29 H 1.09006 * 109.46991 * 30.24165 * 1 2 3
30 30 H 1.09009 * 109.47543 * 150.23674 * 1 2 3
31 31 H 1.08003 * 120.08134 * 0.02562 * 3 2 1
32 32 H 0.96998 * 120.00405 * 180.02562 * 8 7 5
33 33 H 1.08001 * 120.08077 * 179.97438 * 13 4 3
34 34 H 1.08000 * 119.91903 * 179.97438 * 14 13 4
35 35 H 0.96990 * 119.99868 * 359.72706 * 16 15 2
36 36 H 1.09001 * 109.47653 * 60.00407 * 17 16 15
37 37 H 1.09001 * 109.47546 * 299.99578 * 17 16 15
38 38 H 1.08998 * 109.47199 * 60.00074 * 18 17 16
39 39 H 1.08995 * 109.47474 * 299.99864 * 18 17 16
40 40 H 0.97001 * 120.00820 * 4.70261 * 21 19 18
41 41 H 1.07994 * 120.03061 * 359.95500 * 23 22 21
42 42 H 1.08000 * 119.95901 * 179.72739 * 24 23 22
43 43 H 1.08000 * 119.93458 * 180.25818 * 25 24 23
44 44 H 1.07991 * 119.97034 * 179.72206 * 26 25 24
45 45 H 1.08001 * 120.03251 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1871 1.1818 0.0000
4 6 3.5958 1.1797 -0.0063
5 6 4.3066 2.3990 -0.0120
6 1 3.8859 3.2671 -0.4975
7 6 5.5559 2.4830 0.6113
8 7 6.3207 3.5255 0.4067
9 14 6.1331 1.1077 1.7359
10 1 6.9283 0.1283 0.9522
11 1 6.9752 1.6748 2.8196
12 1 4.9548 0.4264 2.3297
13 6 4.2918 -0.0454 -0.0065
14 6 3.5987 -1.2193 -0.0010
15 6 2.2029 -1.2095 0.0051
16 7 1.5035 -2.4092 0.0107
17 6 2.2308 -3.6809 0.0100
18 6 1.2316 -4.8397 0.0175
19 6 1.9796 -6.1480 0.0162
20 8 3.1924 -6.1530 0.0103
21 7 1.3008 -7.3122 0.0225
22 6 1.9923 -8.5247 0.1205
23 6 1.4400 -9.5857 0.8262
24 6 2.1274 -10.7795 0.9252
25 6 3.3591 -10.9227 0.3133
26 6 3.9120 -9.8681 -0.3897
27 6 3.2321 -8.6698 -0.4880
28 1 -0.3634 0.0044 1.0276
29 1 -0.3633 0.8879 -0.5176
30 1 -0.3634 -0.8921 -0.5102
31 1 1.6472 2.1172 0.0004
32 1 7.1872 3.5837 0.8386
33 1 5.3718 -0.0545 -0.0117
34 1 4.1309 -2.1591 -0.0015
35 1 0.5337 -2.4051 0.0150
36 1 2.8611 -3.7396 0.8973
37 1 2.8532 -3.7432 -0.8827
38 1 0.6009 -4.7813 -0.8696
39 1 0.6095 -4.7773 0.9103
40 1 0.3328 -7.3098 -0.0410
41 1 0.4762 -9.4758 1.3009
42 1 1.7004 -11.6035 1.4775
43 1 3.8927 -11.8586 0.3887
44 1 4.8762 -9.9815 -0.8627
45 1 3.6646 -7.8464 -1.0369
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001168982548.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:28:02
Heat of formation + Delta-G solvation = -8.852538 kcal
Electronic energy + Delta-G solvation = -25460.229256 eV
Core-core repulsion = 21827.041140 eV
Total energy + Delta-G solvation = -3633.188116 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.61874 -40.29287 -39.45663 -37.05904 -35.85122 -35.22256 -33.59334 -32.57985
-31.82922 -30.88830 -29.79939 -27.84575 -26.27479 -24.98151 -23.83117 -23.20786
-22.19249 -21.72248 -21.27422 -19.09690 -18.81941 -18.33143 -17.96288 -17.19967
-16.90335 -16.78080 -16.55066 -15.72794 -15.53771 -15.27728 -15.06355 -14.95732
-14.64409 -14.47186 -14.32714 -14.23861 -13.98207 -13.90998 -13.74275 -13.40313
-13.03898 -12.82544 -12.73048 -12.61360 -12.49016 -12.22961 -12.19343 -11.92197
-11.69799 -11.45017 -11.40079 -10.98404 -10.91666 -10.46829 -9.87070 -9.39097
-9.15151 -8.75919 -8.25944 -6.20497 0.29352 0.46055 0.84800 0.94309
1.26350 1.39515 1.48081 1.51176 1.90942 2.15680 2.69672 2.85867
2.88159 3.55754 3.61820 3.90890 4.06288 4.07902 4.11670 4.22141
4.25907 4.30592 4.49503 4.52989 4.60094 4.61629 4.66654 4.68050
4.90082 4.90731 4.96895 4.99320 5.09176 5.11149 5.19205 5.36044
5.36922 5.39244 5.48377 5.55497 5.62638 5.67057 5.84235 6.00867
6.09304 6.23654 6.37257 6.42168 6.61387 6.87658 6.97409 7.08293
7.23938 8.34706
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.018246 B = 0.002312 C = 0.002098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.205922 B =12107.086714 C =13343.842379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C -0.125 4.125
3 C -0.168 4.168
4 C 0.026 3.974
5 C -0.483 4.483
6 H 0.051 0.949
7 C 0.039 3.961
8 N -0.875 5.875
9 Si 0.965 3.035
10 H -0.270 1.270
11 H -0.283 1.283
12 H -0.254 1.254
13 C -0.208 4.208
14 C -0.163 4.163
15 C 0.127 3.873
16 N -0.742 5.742
17 C 0.148 3.852
18 C -0.132 4.132
19 C 0.515 3.485
20 O -0.563 6.563
21 N -0.660 5.660
22 C 0.125 3.875
23 C -0.144 4.144
24 C -0.105 4.105
25 C -0.140 4.140
26 C -0.117 4.117
27 C -0.150 4.150
28 H 0.072 0.928
29 H 0.064 0.936
30 H 0.078 0.922
31 H 0.105 0.895
32 H 0.286 0.714
33 H 0.088 0.912
34 H 0.107 0.893
35 H 0.406 0.594
36 H 0.037 0.963
37 H 0.040 0.960
38 H 0.135 0.865
39 H 0.134 0.866
40 H 0.430 0.570
41 H 0.153 0.847
42 H 0.154 0.846
43 H 0.144 0.856
44 H 0.131 0.869
45 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.229 -30.040 1.354 34.170
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.129 4.129
3 C -0.187 4.187
4 C 0.023 3.977
5 C -0.515 4.515
6 H 0.070 0.930
7 C -0.171 4.171
8 N -0.505 5.505
9 Si 0.791 3.209
10 H -0.196 1.196
11 H -0.211 1.211
12 H -0.178 1.178
13 C -0.228 4.228
14 C -0.185 4.185
15 C 0.026 3.974
16 N -0.379 5.379
17 C 0.022 3.978
18 C -0.172 4.172
19 C 0.304 3.696
20 O -0.441 6.441
21 N -0.307 5.307
22 C 0.031 3.969
23 C -0.164 4.164
24 C -0.123 4.123
25 C -0.159 4.159
26 C -0.136 4.136
27 C -0.170 4.170
28 H 0.091 0.909
29 H 0.083 0.917
30 H 0.097 0.903
31 H 0.123 0.877
32 H 0.096 0.904
33 H 0.106 0.894
34 H 0.125 0.875
35 H 0.244 0.756
36 H 0.056 0.944
37 H 0.058 0.942
38 H 0.152 0.848
39 H 0.151 0.849
40 H 0.270 0.730
41 H 0.171 0.829
42 H 0.172 0.828
43 H 0.162 0.838
44 H 0.149 0.851
45 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -15.074 -29.924 1.377 33.535
hybrid contribution 0.601 0.415 0.100 0.738
sum -14.473 -29.509 1.477 32.900
Atomic orbital electron populations
1.20593 0.89170 1.02882 1.02387 1.19272 0.96948 0.90898 1.05737
1.20737 0.93003 0.96971 1.08032 1.17771 0.93251 0.92218 0.94474
1.19266 1.01948 0.96948 1.33360 0.93033 1.26659 0.95254 0.98210
0.96952 1.69733 1.10449 1.31020 1.39281 0.85512 0.78792 0.78280
0.78288 1.19604 1.21075 1.17761 1.20658 0.97806 0.93292 1.11030
1.20165 0.93332 0.96842 1.08197 1.17236 0.90163 0.86347 1.03614
1.43829 1.07613 1.00913 1.85535 1.20716 0.94181 0.82611 1.00275
1.21697 0.98899 0.88369 1.08239 1.21118 0.87795 0.86331 0.74348
1.90754 1.16215 1.87894 1.49222 1.43384 1.11611 1.03223 1.72479
1.17995 0.93975 0.86718 0.98167 1.21245 1.02462 0.93015 0.99681
1.21372 0.94602 0.97633 0.98680 1.21486 0.96621 0.99417 0.98337
1.21303 1.00237 0.92735 0.99323 1.21339 0.96150 0.98449 1.01084
0.90891 0.91672 0.90293 0.87722 0.90372 0.89414 0.87474 0.75621
0.94440 0.94180 0.84758 0.84855 0.72990 0.82943 0.82806 0.83806
0.85133 0.86901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.44 9.55 71.23 0.68 -1.76 16
2 C -0.12 -4.76 5.86 -19.99 -0.12 -4.87 16
3 C -0.17 -7.82 9.37 22.47 0.21 -7.61 16
4 C 0.03 1.40 5.13 -21.27 -0.11 1.29 16
5 C -0.48 -29.00 9.59 23.38 0.22 -28.77 16
6 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16
7 C 0.04 2.29 5.47 85.23 0.47 2.76 16
8 N -0.88 -52.18 13.93 21.82 0.30 -51.88 16
9 Si 0.97 47.64 24.40 68.60 1.67 49.32 16
10 H -0.27 -12.92 6.66 99.48 0.66 -12.26 16
11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16
12 H -0.25 -12.67 6.67 99.48 0.66 -12.01 16
13 C -0.21 -10.65 6.93 22.48 0.16 -10.49 16
14 C -0.16 -7.22 9.23 22.15 0.20 -7.02 16
15 C 0.13 4.79 6.65 38.67 0.26 5.05 16
16 N -0.74 -19.77 5.60 -338.98 -1.90 -21.67 16
17 C 0.15 3.69 4.18 86.38 0.36 4.05 16
18 C -0.13 -1.79 5.82 29.85 0.17 -1.62 16
19 C 0.52 9.93 7.67 87.66 0.67 10.60 16
20 O -0.56 -16.79 13.43 -3.05 -0.04 -16.83 16
21 N -0.66 -8.83 5.34 -303.50 -1.62 -10.45 16
22 C 0.13 2.20 6.30 38.15 0.24 2.44 16
23 C -0.14 -1.77 9.97 22.39 0.22 -1.55 16
24 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16
25 C -0.14 -1.89 10.04 22.29 0.22 -1.67 16
26 C -0.12 -2.12 10.04 22.25 0.22 -1.90 16
27 C -0.15 -3.31 8.70 22.39 0.19 -3.12 16
28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
29 H 0.06 1.65 8.08 -2.38 -0.02 1.63 16
30 H 0.08 1.57 6.54 -2.38 -0.02 1.55 16
31 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16
32 H 0.29 15.53 8.30 -92.71 -0.77 14.76 16
33 H 0.09 4.61 4.41 -2.91 -0.01 4.60 16
34 H 0.11 4.45 6.68 -2.91 -0.02 4.43 16
35 H 0.41 7.91 6.43 -92.72 -0.60 7.31 16
36 H 0.04 1.12 7.88 -2.39 -0.02 1.10 16
37 H 0.04 1.18 7.88 -2.39 -0.02 1.16 16
38 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16
39 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16
40 H 0.43 2.02 8.82 -92.71 -0.82 1.21 16
41 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16
42 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16
43 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16
44 H 0.13 2.02 8.06 -2.92 -0.02 2.00 16
45 H 0.11 3.04 6.24 -2.91 -0.02 3.02 16
Total: -1.00 -78.49 367.69 2.45 -76.03
By element:
Atomic # 1 Polarization: 21.10 SS G_CDS: -0.47 Total: 20.62 kcal
Atomic # 6 Polarization: -49.65 SS G_CDS: 4.51 Total: -45.15 kcal
Atomic # 7 Polarization: -80.78 SS G_CDS: -3.21 Total: -83.99 kcal
Atomic # 8 Polarization: -16.79 SS G_CDS: -0.04 Total: -16.83 kcal
Atomic # 14 Polarization: 47.64 SS G_CDS: 1.67 Total: 49.32 kcal
Total: -78.49 2.45 -76.03 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168982548.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.182 kcal
(2) G-P(sol) polarization free energy of solvation -78.488 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds