Wall clock time and date at job start Tue Mar 31 2020 14:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 119.99644 * 2 1 4 4 C 1.38237 * 119.99889 * 180.02562 * 3 2 1 5 5 C 1.38238 * 119.99653 * 0.24522 * 4 3 2 6 6 C 1.50706 * 119.99815 * 179.72691 * 5 4 3 7 7 N 1.46496 * 109.46823 * 90.00302 * 6 5 4 8 8 C 1.34773 * 120.00302 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99876 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00614 * 179.97438 * 8 7 6 11 11 C 1.37196 * 119.99837 * 0.02562 * 10 8 7 12 12 H 1.08004 * 119.99825 * 5.74244 * 11 10 8 13 13 C 1.38877 * 119.99980 * 185.73911 * 11 10 8 14 14 N 1.31473 * 120.00234 * 355.01697 * 13 11 10 15 15 Si 1.86801 * 119.99687 * 175.01124 * 13 11 10 16 16 H 1.48497 * 109.47107 * 60.00515 * 15 13 11 17 17 H 1.48501 * 109.46796 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47264 * 300.00159 * 15 13 11 19 19 C 1.46501 * 120.00262 * 179.97438 * 10 8 7 20 20 C 1.50704 * 109.46983 * 85.47024 * 19 10 8 21 21 C 1.38239 * 119.99768 * 274.96856 * 20 19 10 22 22 C 1.38234 * 119.99611 * 179.76323 * 21 20 19 23 23 C 1.38238 * 120.00196 * 0.50913 * 22 21 20 24 24 C 1.38238 * 119.99905 * 359.74277 * 23 22 21 25 25 C 1.38235 * 119.99825 * 95.23563 * 20 19 10 26 26 C 1.38237 * 120.00236 * 359.49950 * 5 4 3 27 27 C 1.38233 * 120.00003 * 0.48149 * 26 5 4 28 28 H 1.09005 * 109.46857 * 90.00269 * 1 2 3 29 29 H 1.08997 * 109.47137 * 210.00274 * 1 2 3 30 30 H 1.08993 * 109.47360 * 330.00742 * 1 2 3 31 31 H 1.07998 * 119.99888 * 359.96910 * 3 2 1 32 32 H 1.07998 * 119.99915 * 179.97438 * 4 3 2 33 33 H 1.08992 * 109.47339 * 210.00335 * 6 5 4 34 34 H 1.09001 * 109.46842 * 330.01070 * 6 5 4 35 35 H 0.97003 * 120.00069 * 0.02562 * 7 6 5 36 36 H 0.96996 * 120.00295 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.47324 * 205.47036 * 19 10 8 38 38 H 1.08994 * 109.47145 * 325.47030 * 19 10 8 39 39 H 1.07999 * 119.99629 * 359.97438 * 21 20 19 40 40 H 1.07998 * 120.00019 * 180.22847 * 22 21 20 41 41 H 1.07999 * 120.00197 * 179.72367 * 23 22 21 42 42 H 1.07995 * 120.00399 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.99949 * 0.02562 * 25 20 19 44 44 H 1.07994 * 119.99948 * 180.25262 * 26 5 4 45 45 H 1.07998 * 120.00459 * 179.77000 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0062 6 6 5.7787 0.0002 -0.0130 7 7 6.2732 -0.0028 1.3660 8 6 7.5993 -0.0038 1.6064 9 8 8.3853 -0.0018 0.6788 10 7 8.0543 -0.0061 2.8750 11 6 7.1674 -0.0078 3.9218 12 1 6.1083 -0.1010 3.7321 13 6 7.6317 0.1101 5.2254 14 7 8.9245 0.1249 5.4640 15 14 6.4191 0.2480 6.6396 16 1 5.5584 -0.9616 6.6735 17 1 7.1629 0.3629 7.9198 18 1 5.5722 1.4531 6.4499 19 6 9.4958 -0.0078 3.1363 20 6 10.0114 1.4082 3.1175 21 6 10.3641 1.9995 1.9187 22 6 10.8323 3.3000 1.9009 23 6 10.9579 4.0057 3.0830 24 6 10.6101 3.4126 4.2823 25 6 10.1368 2.1139 4.2995 26 6 3.5806 -1.1971 -0.0009 27 6 2.1982 -1.1972 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6581 2.1325 -0.0005 32 1 4.1204 2.1326 -0.0010 33 1 6.1398 -0.8886 -0.5304 34 1 6.1397 0.8914 -0.5264 35 1 5.6462 -0.0048 2.1061 36 1 9.2487 0.2077 6.3745 37 1 9.6875 -0.4513 4.1133 38 1 10.0038 -0.5896 2.3672 39 1 10.2705 1.4465 0.9958 40 1 11.1044 3.7632 0.9640 41 1 11.3279 5.0202 3.0696 42 1 10.7085 3.9637 5.2058 43 1 9.8657 1.6503 5.2365 44 1 4.1206 -2.1323 -0.0012 45 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185392807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:55 Heat of formation + Delta-G solvation = 48.280379 kcal Electronic energy + Delta-G solvation = -26871.088142 eV Core-core repulsion = 23240.377495 eV Total energy + Delta-G solvation = -3630.710647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.61005 -38.98266 -37.84232 -35.30024 -34.40911 -32.28452 -31.60626 -30.90159 -30.51149 -29.74712 -27.99135 -25.71586 -24.81007 -23.48566 -22.68008 -21.49586 -20.77722 -20.36841 -19.36413 -17.96449 -17.06619 -15.90767 -15.63629 -15.49210 -15.03977 -14.84180 -14.47999 -14.34658 -14.01116 -13.90098 -13.82686 -13.40250 -13.29711 -13.06694 -12.71976 -12.45377 -12.42420 -12.22609 -11.92941 -11.75429 -11.66686 -11.48655 -11.13293 -10.99910 -10.92640 -10.62581 -10.46783 -10.37878 -10.22809 -9.75617 -9.18989 -8.94670 -8.89310 -8.49649 -8.18192 -7.90531 -7.71273 -7.60200 -6.02352 -3.94948 1.28605 1.43951 2.34241 2.45961 3.10430 3.17706 3.18510 3.64849 4.00914 4.26538 4.33372 4.77100 4.80817 4.85547 4.99506 5.05724 5.09765 5.21051 5.43449 5.50990 5.65072 5.65592 5.70175 5.73679 5.86844 5.90321 5.94752 6.03226 6.15087 6.20439 6.38987 6.42467 6.57247 6.57643 6.71095 6.74184 6.85748 7.02683 7.07262 7.10459 7.27971 7.43204 7.47054 7.48712 7.65414 7.89589 8.02099 8.15371 8.37561 8.62724 9.12899 9.72778 10.06995 10.61030 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003745 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.868475 B = 7475.713286 C = 8646.660239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.124 4.124 4 C -0.096 4.096 5 C -0.101 4.101 6 C 0.185 3.815 7 N -0.748 5.748 8 C 0.670 3.330 9 O -0.636 6.636 10 N -0.470 5.470 11 C -0.292 4.292 12 H 0.091 0.909 13 C 0.021 3.979 14 N -0.877 5.877 15 Si 0.930 3.070 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.277 1.277 19 C 0.134 3.866 20 C -0.064 4.064 21 C -0.112 4.112 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.154 4.154 25 C -0.095 4.095 26 C -0.097 4.097 27 C -0.125 4.125 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.266 0.734 37 H 0.179 0.821 38 H 0.034 0.966 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.170 0.830 44 H 0.124 0.876 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 0.884 -4.977 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.115 4.115 5 C -0.101 4.101 6 C 0.060 3.940 7 N -0.407 5.407 8 C 0.372 3.628 9 O -0.521 6.521 10 N -0.193 5.193 11 C -0.419 4.419 12 H 0.109 0.891 13 C -0.176 4.176 14 N -0.523 5.523 15 Si 0.757 3.243 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.202 1.202 19 C 0.011 3.989 20 C -0.065 4.065 21 C -0.131 4.131 22 C -0.167 4.167 23 C -0.158 4.158 24 C -0.172 4.172 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.079 0.921 37 H 0.194 0.806 38 H 0.053 0.947 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.186 0.814 44 H 0.142 0.858 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.342 0.867 -5.422 10.836 hybrid contribution -0.905 0.443 0.821 1.300 sum -10.247 1.310 -4.601 11.308 Atomic orbital electron populations 1.20780 0.91434 1.02682 1.02093 1.19926 0.95919 0.93327 0.99736 1.21006 0.94129 0.97439 1.01664 1.21128 0.94043 0.97877 0.98441 1.20060 0.95709 0.93328 1.01006 1.19791 0.87481 1.01974 0.84774 1.45102 1.06345 1.82496 1.06744 1.15944 0.81682 0.81058 0.84085 1.90717 1.55261 1.62555 1.43550 1.42986 1.05801 1.68484 1.01981 1.19549 0.89927 1.46727 0.85722 0.89112 1.25040 0.96565 0.97521 0.98434 1.69145 1.11219 1.52113 1.19872 0.85922 0.79627 0.78731 0.80015 1.20135 1.20609 1.20220 1.21734 0.78457 0.92046 1.06677 1.20455 0.95870 0.98249 0.91955 1.21442 0.98049 0.94757 0.98824 1.20923 1.03139 0.95520 0.97069 1.20923 1.02612 0.98862 0.93427 1.21217 1.02478 0.96781 0.96718 1.22678 0.93775 0.92588 1.02309 1.21115 0.94031 0.97828 0.98553 1.21000 0.94130 0.97423 1.01716 0.91359 0.91640 0.91645 0.86201 0.85834 0.91852 0.91888 0.76768 0.92061 0.80613 0.94736 0.86163 0.87887 0.88056 0.87849 0.81362 0.85818 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 4 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 5 C -0.10 -1.44 5.25 -104.62 -0.55 -1.99 16 6 C 0.18 3.15 5.80 -5.19 -0.03 3.12 16 7 N -0.75 -15.13 5.44 -66.42 -0.36 -15.49 16 8 C 0.67 16.28 8.20 -86.92 -0.71 15.57 16 9 O -0.64 -16.75 14.44 5.29 0.08 -16.67 16 10 N -0.47 -11.68 2.62 -121.47 -0.32 -12.00 16 11 C -0.29 -7.05 9.51 -14.91 -0.14 -7.20 16 12 H 0.09 2.06 5.85 -52.48 -0.31 1.76 16 13 C 0.02 0.50 5.45 -17.47 -0.10 0.40 16 14 N -0.88 -20.59 5.74 55.49 0.32 -20.27 16 15 Si 0.93 18.75 29.56 -169.99 -5.02 13.73 16 16 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 C 0.13 3.30 4.97 -5.19 -0.03 3.27 16 20 C -0.06 -1.52 5.43 -104.62 -0.57 -2.08 16 21 C -0.11 -2.56 9.40 -39.58 -0.37 -2.93 16 22 C -0.15 -3.00 10.05 -39.58 -0.40 -3.39 16 23 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -3.10 10.05 -39.58 -0.40 -3.49 16 25 C -0.10 -2.16 9.21 -39.58 -0.36 -2.52 16 26 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 27 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 34 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.40 7.75 6.11 -40.82 -0.25 7.50 16 36 H 0.27 5.93 8.08 -40.82 -0.33 5.60 16 37 H 0.18 4.46 4.56 -81.35 -0.37 4.09 16 38 H 0.03 0.87 7.54 -51.93 -0.39 0.48 16 39 H 0.12 2.87 6.81 -52.49 -0.36 2.51 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.17 3.88 4.55 -52.62 -0.24 3.65 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -27.77 367.55 -11.72 -39.49 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -6.10 Total: 19.14 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -5.84 Total: -13.47 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.36 Total: -47.76 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.08 Total: -16.67 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.77 -11.72 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185392807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.772 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds