Wall clock time and date at job start Tue Mar 31 2020 14:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 119.99644 * 2 1 4 4 C 1.38237 * 119.99889 * 180.02562 * 3 2 1 5 5 C 1.38238 * 119.99653 * 0.24522 * 4 3 2 6 6 C 1.50706 * 119.99815 * 179.72691 * 5 4 3 7 7 N 1.46496 * 109.46823 * 90.00302 * 6 5 4 8 8 C 1.34773 * 120.00302 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99876 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00614 * 179.97438 * 8 7 6 11 11 C 1.37196 * 119.99837 * 0.02562 * 10 8 7 12 12 H 1.08004 * 119.99825 * 5.74244 * 11 10 8 13 13 C 1.38877 * 119.99980 * 185.73911 * 11 10 8 14 14 N 1.31473 * 120.00234 * 355.01697 * 13 11 10 15 15 Si 1.86801 * 119.99687 * 175.01124 * 13 11 10 16 16 H 1.48497 * 109.47107 * 60.00515 * 15 13 11 17 17 H 1.48501 * 109.46796 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47264 * 300.00159 * 15 13 11 19 19 C 1.46501 * 120.00262 * 179.97438 * 10 8 7 20 20 C 1.50704 * 109.46983 * 85.47024 * 19 10 8 21 21 C 1.38239 * 119.99768 * 274.96856 * 20 19 10 22 22 C 1.38234 * 119.99611 * 179.76323 * 21 20 19 23 23 C 1.38238 * 120.00196 * 0.50913 * 22 21 20 24 24 C 1.38238 * 119.99905 * 359.74277 * 23 22 21 25 25 C 1.38235 * 119.99825 * 95.23563 * 20 19 10 26 26 C 1.38237 * 120.00236 * 359.49950 * 5 4 3 27 27 C 1.38233 * 120.00003 * 0.48149 * 26 5 4 28 28 H 1.09005 * 109.46857 * 90.00269 * 1 2 3 29 29 H 1.08997 * 109.47137 * 210.00274 * 1 2 3 30 30 H 1.08993 * 109.47360 * 330.00742 * 1 2 3 31 31 H 1.07998 * 119.99888 * 359.96910 * 3 2 1 32 32 H 1.07998 * 119.99915 * 179.97438 * 4 3 2 33 33 H 1.08992 * 109.47339 * 210.00335 * 6 5 4 34 34 H 1.09001 * 109.46842 * 330.01070 * 6 5 4 35 35 H 0.97003 * 120.00069 * 0.02562 * 7 6 5 36 36 H 0.96996 * 120.00295 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.47324 * 205.47036 * 19 10 8 38 38 H 1.08994 * 109.47145 * 325.47030 * 19 10 8 39 39 H 1.07999 * 119.99629 * 359.97438 * 21 20 19 40 40 H 1.07998 * 120.00019 * 180.22847 * 22 21 20 41 41 H 1.07999 * 120.00197 * 179.72367 * 23 22 21 42 42 H 1.07995 * 120.00399 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.99949 * 0.02562 * 25 20 19 44 44 H 1.07994 * 119.99948 * 180.25262 * 26 5 4 45 45 H 1.07998 * 120.00459 * 179.77000 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0062 6 6 5.7787 0.0002 -0.0130 7 7 6.2732 -0.0028 1.3660 8 6 7.5993 -0.0038 1.6064 9 8 8.3853 -0.0018 0.6788 10 7 8.0543 -0.0061 2.8750 11 6 7.1674 -0.0078 3.9218 12 1 6.1083 -0.1010 3.7321 13 6 7.6317 0.1101 5.2254 14 7 8.9245 0.1249 5.4640 15 14 6.4191 0.2480 6.6396 16 1 5.5584 -0.9616 6.6735 17 1 7.1629 0.3629 7.9198 18 1 5.5722 1.4531 6.4499 19 6 9.4958 -0.0078 3.1363 20 6 10.0114 1.4082 3.1175 21 6 10.3641 1.9995 1.9187 22 6 10.8323 3.3000 1.9009 23 6 10.9579 4.0057 3.0830 24 6 10.6101 3.4126 4.2823 25 6 10.1368 2.1139 4.2995 26 6 3.5806 -1.1971 -0.0009 27 6 2.1982 -1.1972 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6581 2.1325 -0.0005 32 1 4.1204 2.1326 -0.0010 33 1 6.1398 -0.8886 -0.5304 34 1 6.1397 0.8914 -0.5264 35 1 5.6462 -0.0048 2.1061 36 1 9.2487 0.2077 6.3745 37 1 9.6875 -0.4513 4.1133 38 1 10.0038 -0.5896 2.3672 39 1 10.2705 1.4465 0.9958 40 1 11.1044 3.7632 0.9640 41 1 11.3279 5.0202 3.0696 42 1 10.7085 3.9637 5.2058 43 1 9.8657 1.6503 5.2365 44 1 4.1206 -2.1323 -0.0012 45 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185392807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:54 Heat of formation + Delta-G solvation = 36.645985 kcal Electronic energy + Delta-G solvation = -26871.592647 eV Core-core repulsion = 23240.377495 eV Total energy + Delta-G solvation = -3631.215152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10816 -40.31716 -39.50672 -37.02432 -35.93702 -33.67292 -33.34487 -32.12325 -31.85304 -31.41435 -29.13396 -27.49925 -26.32589 -24.90571 -23.63425 -23.17432 -22.17675 -21.70471 -21.16256 -19.72569 -18.78563 -17.37463 -17.01584 -16.64561 -16.57251 -16.25075 -16.00497 -15.86617 -15.61316 -15.57882 -15.07370 -14.73391 -14.49579 -14.34148 -14.14321 -14.05724 -13.60381 -13.48175 -13.44835 -13.21356 -12.87143 -12.82826 -12.77721 -12.45472 -12.14820 -12.10415 -11.98195 -11.91808 -11.85387 -11.52363 -11.00539 -10.82372 -9.95177 -9.84572 -9.59291 -9.52429 -9.46186 -9.33411 -7.83757 -5.81797 0.28383 0.48029 0.67629 0.78161 1.49936 1.52685 1.60533 2.24226 2.41052 2.49442 2.91337 3.16964 3.28124 3.72270 3.89175 3.90624 4.08366 4.12838 4.25517 4.27761 4.29673 4.39971 4.54440 4.60839 4.67598 4.70602 4.85968 4.86632 4.87243 4.92852 4.95170 5.11673 5.17816 5.28190 5.30723 5.38533 5.46195 5.55119 5.61163 5.67559 5.69323 5.78002 5.82693 5.93837 6.03844 6.09181 6.27205 6.44374 6.59442 6.77987 7.27269 7.88662 8.19900 8.81242 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003745 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.868475 B = 7475.713286 C = 8646.660239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.117 4.117 6 C 0.190 3.810 7 N -0.738 5.738 8 C 0.655 3.345 9 O -0.667 6.667 10 N -0.477 5.477 11 C -0.323 4.323 12 H 0.100 0.900 13 C -0.010 4.010 14 N -0.886 5.886 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.137 3.863 20 C -0.085 4.085 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.131 4.131 24 C -0.151 4.151 25 C -0.114 4.114 26 C -0.106 4.106 27 C -0.127 4.127 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.399 0.601 36 H 0.271 0.729 37 H 0.173 0.827 38 H 0.009 0.991 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.163 0.837 44 H 0.125 0.875 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 2.529 -3.920 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.126 4.126 5 C -0.118 4.118 6 C 0.066 3.934 7 N -0.396 5.396 8 C 0.358 3.642 9 O -0.554 6.554 10 N -0.199 5.199 11 C -0.450 4.450 12 H 0.117 0.883 13 C -0.206 4.206 14 N -0.531 5.531 15 Si 0.819 3.181 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.203 1.203 19 C 0.013 3.987 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.165 4.165 23 C -0.149 4.149 24 C -0.169 4.169 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.145 4.145 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.139 0.861 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.188 0.812 38 H 0.027 0.973 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.179 0.821 44 H 0.143 0.857 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.458 2.506 -4.368 12.516 hybrid contribution -0.238 -0.051 0.485 0.543 sum -11.696 2.455 -3.883 12.566 Atomic orbital electron populations 1.20848 0.88937 1.03767 1.03293 1.20355 0.97757 0.92771 0.97745 1.21287 0.93382 0.98899 1.00968 1.21209 0.95098 0.97339 0.98945 1.19818 0.93701 0.94585 1.03672 1.19799 0.89781 1.00994 0.82860 1.45070 1.04902 1.81383 1.08200 1.16236 0.82803 0.81417 0.83779 1.90674 1.56353 1.64039 1.44341 1.43133 1.05939 1.68391 1.02459 1.19865 0.90343 1.48680 0.86090 0.88277 1.25809 0.98144 0.96527 1.00094 1.69207 1.12254 1.51096 1.20522 0.84946 0.77571 0.78494 0.77044 1.19640 1.20194 1.20331 1.21643 0.78777 0.93063 1.05172 1.20408 0.97296 0.97895 0.93022 1.21368 0.99930 0.96287 0.97646 1.21244 1.01869 0.94279 0.99090 1.21354 1.00871 1.00427 0.92229 1.21566 1.00959 0.95740 0.98642 1.22656 0.95183 0.94024 1.01357 1.21220 0.95062 0.97334 0.98806 1.21300 0.93419 0.98873 1.00881 0.89959 0.90550 0.90645 0.83958 0.86087 0.92601 0.93011 0.76392 0.91623 0.81215 0.97251 0.88469 0.85158 0.83805 0.84737 0.82070 0.85727 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.09 -1.70 5.88 -19.86 -0.12 -1.82 16 3 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 4 C -0.11 -2.84 9.70 22.27 0.22 -2.63 16 5 C -0.12 -3.43 5.25 -19.86 -0.10 -3.54 16 6 C 0.19 6.84 5.80 85.64 0.50 7.34 16 7 N -0.74 -31.33 5.44 -482.31 -2.62 -33.95 16 8 C 0.66 33.70 8.20 179.06 1.47 35.17 16 9 O -0.67 -37.48 14.44 -3.99 -0.06 -37.54 16 10 N -0.48 -24.88 2.62 -656.48 -1.72 -26.60 16 11 C -0.32 -16.00 9.51 84.01 0.80 -15.20 16 12 H 0.10 4.59 5.85 -2.91 -0.02 4.57 16 13 C -0.01 -0.46 5.45 84.90 0.46 0.00 16 14 N -0.89 -42.12 5.74 21.65 0.12 -42.00 16 15 Si 0.99 37.95 29.56 68.60 2.03 39.98 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.28 -10.32 7.11 99.48 0.71 -9.62 16 18 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 19 C 0.14 7.14 4.97 85.63 0.43 7.57 16 20 C -0.08 -4.17 5.43 -19.86 -0.11 -4.28 16 21 C -0.13 -6.29 9.40 22.27 0.21 -6.08 16 22 C -0.15 -5.75 10.05 22.27 0.22 -5.53 16 23 C -0.13 -4.61 10.05 22.27 0.22 -4.39 16 24 C -0.15 -5.75 10.05 22.27 0.22 -5.52 16 25 C -0.11 -5.16 9.21 22.27 0.21 -4.96 16 26 C -0.11 -2.73 9.70 22.27 0.22 -2.52 16 27 C -0.13 -2.69 9.70 22.27 0.22 -2.48 16 28 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 30 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 35 H 0.40 16.21 6.11 -92.71 -0.57 15.64 16 36 H 0.27 12.06 8.08 -92.71 -0.75 11.31 16 37 H 0.17 9.08 4.56 -60.47 -0.28 8.81 16 38 H 0.01 0.50 7.54 -2.39 -0.02 0.49 16 39 H 0.10 4.95 6.81 -2.91 -0.02 4.93 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.16 7.49 4.55 -3.17 -0.01 7.47 16 44 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 45 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -62.20 367.55 3.93 -58.27 By element: Atomic # 1 Polarization: 53.78 SS G_CDS: 0.20 Total: 53.97 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.99 Total: -12.13 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -4.22 Total: -102.56 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.06 Total: -37.54 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -62.20 3.93 -58.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185392807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.913 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds