Wall clock time and date at job start Tue Mar 31 2020 13:38:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31506 * 1
3 3 Si 1.86796 * 120.00300 * 2 1
4 4 H 1.48492 * 109.47431 * 270.00570 * 3 2 1
5 5 H 1.48504 * 109.46706 * 30.00448 * 3 2 1
6 6 H 1.48499 * 109.47343 * 149.99927 * 3 2 1
7 7 C 1.37879 * 120.00152 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99610 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00436 * 179.97438 * 7 2 1
10 10 O 1.42897 * 109.47390 * 179.97438 * 9 7 2
11 11 C 1.35895 * 117.00141 * 179.97438 * 10 9 7
12 12 C 1.38825 * 119.93173 * 179.97438 * 11 10 9
13 13 C 1.37910 * 120.06954 * 180.02562 * 12 11 10
14 14 C 1.39415 * 119.93046 * 359.97438 * 13 12 11
15 15 C 1.48287 * 120.06986 * 179.97438 * 14 13 12
16 16 C 1.39495 * 120.56408 * 304.23280 * 15 14 13
17 17 C 1.38607 * 118.38822 * 179.76071 * 16 15 14
18 18 C 1.38163 * 119.45395 * 0.49614 * 17 16 15
19 19 N 1.31974 * 121.11951 * 359.76211 * 18 17 16
20 20 C 1.32309 * 121.74920 * 359.97438 * 19 18 17
21 21 N 1.38843 * 119.78390 * 179.97438 * 20 19 18
22 22 C 1.48531 * 111.00229 * 307.58627 * 21 20 19
23 23 C 1.54943 * 103.22560 * 159.72330 * 22 21 20
24 24 C 1.54596 * 102.91906 * 322.58617 * 23 22 21
25 25 C 1.47897 * 110.99846 * 64.98793 * 21 20 19
26 26 C 1.39409 * 119.85669 * 0.24560 * 14 13 12
27 27 C 1.37904 * 119.93316 * 359.51501 * 26 14 13
28 28 H 0.96999 * 120.00591 * 359.97438 * 1 2 3
29 29 H 1.09005 * 109.47173 * 59.99420 * 9 7 2
30 30 H 1.09008 * 109.47066 * 299.99928 * 9 7 2
31 31 H 1.08000 * 119.96256 * 359.97438 * 12 11 10
32 32 H 1.07996 * 120.03631 * 180.02562 * 13 12 11
33 33 H 1.08001 * 120.80692 * 0.02562 * 16 15 14
34 34 H 1.08007 * 120.27638 * 180.24221 * 17 16 15
35 35 H 1.07999 * 119.43987 * 179.75216 * 18 17 16
36 36 H 1.08993 * 110.66964 * 278.15890 * 22 21 20
37 37 H 1.08999 * 110.66340 * 41.29130 * 22 21 20
38 38 H 1.08994 * 110.72069 * 204.22949 * 23 22 21
39 39 H 1.08989 * 110.72038 * 80.94312 * 23 22 21
40 40 H 1.09004 * 110.30898 * 263.04013 * 24 23 22
41 41 H 1.08997 * 110.30848 * 140.87445 * 24 23 22
42 42 H 1.08998 * 109.92105 * 333.50515 * 25 21 20
43 43 H 1.09001 * 109.92169 * 94.80287 * 25 21 20
44 44 H 1.08007 * 120.03091 * 179.75035 * 26 14 13
45 45 H 1.08001 * 119.96918 * 180.23015 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6176 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6525 0.7002
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4644 -2.1293 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 8 3.9878 -2.5414 -0.0010
11 6 5.3350 -2.7195 -0.0020
12 6 5.8641 -4.0030 -0.0014
13 6 7.2308 -4.1870 -0.0019
14 6 8.0814 -3.0824 -0.0036
15 6 9.5515 -3.2767 -0.0035
16 6 10.1664 -4.0381 0.9904
17 6 11.5428 -4.1945 0.9441
18 6 12.2615 -3.5895 -0.0690
19 7 11.6592 -2.8689 -0.9962
20 6 10.3478 -2.6937 -0.9991
21 7 9.7566 -1.9269 -1.9942
22 6 10.4083 -0.5963 -2.0988
23 6 10.0180 -0.1212 -3.5210
24 6 10.0736 -1.4258 -4.3487
25 6 9.9205 -2.5616 -3.3200
26 6 7.5470 -1.7948 0.0005
27 6 6.1794 -1.6175 -0.0040
28 1 -0.4851 0.8400 0.0004
29 1 3.8752 -0.6804 0.8888
30 1 3.8745 -0.6801 -0.8912
31 1 5.2046 -4.8582 0.0003
32 1 7.6418 -5.1857 -0.0019
33 1 9.5836 -4.4983 1.7747
34 1 12.0499 -4.7811 1.6960
35 1 13.3345 -3.7081 -0.1026
36 1 10.0153 0.0849 -1.3443
37 1 11.4905 -0.6899 -2.0080
38 1 10.7390 0.6048 -3.8965
39 1 9.0110 0.2957 -3.5255
40 1 11.0315 -1.5073 -4.8625
41 1 9.2545 -1.4532 -5.0672
42 1 10.8119 -3.1888 -3.3239
43 1 9.0409 -3.1604 -3.5564
44 1 8.2033 -0.9371 0.0033
45 1 5.7647 -0.6202 -0.0046
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001236133160.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:38:16
Heat of formation + Delta-G solvation = 35.780719 kcal
Electronic energy + Delta-G solvation = -26675.483473 eV
Core-core repulsion = 23044.230800 eV
Total energy + Delta-G solvation = -3631.252673 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.95487 -39.35634 -38.34173 -36.86966 -33.12650 -33.06476 -32.64385 -30.73735
-29.95863 -29.06257 -28.72276 -27.58329 -24.10797 -23.54670 -23.01805 -21.69506
-21.16988 -21.00187 -20.62399 -17.86586 -17.61552 -16.93550 -16.60638 -16.27889
-15.78940 -15.33080 -15.06474 -14.82132 -14.47618 -14.21445 -14.06678 -13.82029
-13.59892 -13.30292 -13.09355 -12.89056 -12.63088 -12.49607 -12.29136 -12.20584
-12.15179 -11.55060 -11.43049 -11.35485 -11.11543 -11.07883 -10.75235 -10.62127
-10.33166 -9.99582 -9.90076 -9.84346 -9.34647 -9.04855 -8.78967 -8.73480
-8.63177 -7.46664 -6.24239 -4.26148 0.76427 1.01192 1.72307 1.89762
3.17424 3.24342 3.24905 3.48694 3.54671 4.12840 4.17177 4.21900
4.24689 4.49888 4.61314 4.68484 4.71155 4.83136 4.92237 5.06529
5.10746 5.17427 5.22719 5.23825 5.33833 5.43641 5.54809 5.60977
5.65227 5.66605 5.77991 5.79594 5.85724 5.89139 5.97960 6.00769
6.07171 6.25663 6.34518 6.37764 6.53346 6.63575 6.73138 6.82026
6.84393 7.12643 7.16892 7.39068 7.72829 8.00565 8.52008 8.85426
9.31846 10.88150
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.014621 B = 0.003239 C = 0.002869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1914.557311 B = 8641.425543 C = 9758.491877
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.078 3.922
3 Si 0.873 3.127
4 H -0.270 1.270
5 H -0.279 1.279
6 H -0.264 1.264
7 C -0.529 4.529
8 H 0.086 0.914
9 C 0.168 3.832
10 O -0.302 6.302
11 C 0.158 3.842
12 C -0.168 4.168
13 C -0.066 4.066
14 C -0.101 4.101
15 C -0.044 4.044
16 C -0.068 4.068
17 C -0.174 4.174
18 C 0.099 3.901
19 N -0.511 5.511
20 C 0.289 3.711
21 N -0.460 5.460
22 C 0.039 3.961
23 C -0.122 4.122
24 C -0.128 4.128
25 C 0.045 3.955
26 C -0.030 4.030
27 C -0.218 4.218
28 H 0.269 0.731
29 H 0.019 0.981
30 H 0.015 0.985
31 H 0.128 0.872
32 H 0.119 0.881
33 H 0.139 0.861
34 H 0.135 0.865
35 H 0.152 0.848
36 H 0.080 0.920
37 H 0.062 0.938
38 H 0.072 0.928
39 H 0.078 0.922
40 H 0.067 0.933
41 H 0.074 0.926
42 H 0.053 0.947
43 H 0.081 0.919
44 H 0.116 0.884
45 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.395 -5.294 -2.415 27.029
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.125 4.125
3 Si 0.699 3.301
4 H -0.196 1.196
5 H -0.204 1.204
6 H -0.189 1.189
7 C -0.567 4.567
8 H 0.104 0.896
9 C 0.094 3.906
10 O -0.214 6.214
11 C 0.109 3.891
12 C -0.187 4.187
13 C -0.084 4.084
14 C -0.102 4.102
15 C -0.047 4.047
16 C -0.094 4.094
17 C -0.194 4.194
18 C -0.059 4.059
19 N -0.223 5.223
20 C 0.060 3.940
21 N -0.183 5.183
22 C -0.087 4.087
23 C -0.161 4.161
24 C -0.166 4.166
25 C -0.081 4.081
26 C -0.048 4.048
27 C -0.237 4.237
28 H 0.080 0.920
29 H 0.037 0.963
30 H 0.033 0.967
31 H 0.146 0.854
32 H 0.137 0.863
33 H 0.157 0.843
34 H 0.153 0.847
35 H 0.169 0.831
36 H 0.098 0.902
37 H 0.080 0.920
38 H 0.091 0.909
39 H 0.096 0.904
40 H 0.086 0.914
41 H 0.093 0.907
42 H 0.071 0.929
43 H 0.100 0.900
44 H 0.134 0.866
45 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 25.981 -4.860 -2.949 26.596
hybrid contribution 0.805 0.646 0.489 1.143
sum 26.786 -4.214 -2.460 27.227
Atomic orbital electron populations
1.69846 1.06044 1.27418 1.49255 1.24698 0.94827 0.98705 0.94265
0.86895 0.80449 0.83703 0.79083 1.19580 1.20442 1.18906 1.20782
0.87492 0.95770 1.52617 0.89573 1.21004 0.96494 0.77231 0.95846
1.86159 1.16432 1.33001 1.85842 1.19384 0.84384 0.93661 0.91626
1.20283 0.94679 0.95158 1.08550 1.20783 0.92092 0.97446 0.98059
1.18074 0.89701 0.93556 1.08917 1.19428 0.93815 0.97337 0.94134
1.21736 0.94482 0.95998 0.97178 1.22055 0.94740 1.02041 1.00560
1.22485 1.00032 0.93140 0.90269 1.67627 1.11750 1.16652 1.26243
1.20047 0.86762 0.94119 0.93034 1.62860 1.49885 1.02306 1.03215
1.23287 0.98154 0.89331 0.97963 1.22479 1.02451 0.97098 0.94029
1.22376 1.02141 0.94278 0.97779 1.22861 1.01393 0.96971 0.86904
1.20721 0.93766 0.95691 0.94665 1.21290 0.93882 0.98883 1.09614
0.92045 0.96343 0.96728 0.85387 0.86261 0.84324 0.84704 0.83079
0.90152 0.91952 0.90893 0.90376 0.91443 0.90722 0.92865 0.90033
0.86630 0.85407
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16
2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16
3 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16
4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16
7 C -0.53 -15.33 9.99 -34.44 -0.34 -15.67 16
8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16
9 C 0.17 4.16 3.56 36.00 0.13 4.29 16
10 O -0.30 -7.11 10.12 -19.41 -0.20 -7.30 16
11 C 0.16 3.08 6.69 -39.15 -0.26 2.81 16
12 C -0.17 -2.77 9.97 -39.48 -0.39 -3.16 16
13 C -0.07 -0.92 9.62 -39.26 -0.38 -1.30 16
14 C -0.10 -1.44 5.14 -104.89 -0.54 -1.98 16
15 C -0.04 -0.55 5.43 -104.57 -0.57 -1.12 16
16 C -0.07 -0.69 9.77 -38.98 -0.38 -1.07 16
17 C -0.17 -1.47 10.09 -39.47 -0.40 -1.87 16
18 C 0.10 0.93 11.16 -17.52 -0.20 0.73 16
19 N -0.51 -6.06 8.83 -12.20 -0.11 -6.16 16
20 C 0.29 3.66 5.35 -154.86 -0.83 2.83 16
21 N -0.46 -5.68 3.95 -168.98 -0.67 -6.35 16
22 C 0.04 0.43 6.46 -1.90 -0.01 0.41 16
23 C -0.12 -1.14 7.06 -24.87 -0.18 -1.31 16
24 C -0.13 -1.18 6.93 -25.37 -0.18 -1.35 16
25 C 0.05 0.51 6.61 -2.76 -0.02 0.49 16
26 C -0.03 -0.47 8.89 -39.27 -0.35 -0.82 16
27 C -0.22 -3.91 9.02 -39.48 -0.36 -4.26 16
28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
29 H 0.02 0.45 6.72 -51.93 -0.35 0.11 16
30 H 0.02 0.36 7.08 -51.92 -0.37 -0.01 16
31 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16
32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16
33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16
34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16
35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16
36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
37 H 0.06 0.70 7.28 -51.93 -0.38 0.32 16
38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
42 H 0.05 0.61 7.38 -51.93 -0.38 0.23 16
43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
44 H 0.12 1.65 8.02 -52.48 -0.42 1.23 16
45 H 0.13 2.34 6.28 -52.49 -0.33 2.01 16
LS Contribution 370.53 15.07 5.58 5.58
Total: -1.00 -31.55 370.53 -11.10 -42.64
By element:
Atomic # 1 Polarization: 8.22 SS G_CDS: -6.47 Total: 1.75 kcal
Atomic # 6 Polarization: -14.86 SS G_CDS: -5.34 Total: -20.20 kcal
Atomic # 7 Polarization: -38.48 SS G_CDS: 0.00 Total: -38.48 kcal
Atomic # 8 Polarization: -7.11 SS G_CDS: -0.20 Total: -7.30 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -31.55 -11.10 -42.64 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001236133160.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.422 kcal
(2) G-P(sol) polarization free energy of solvation -31.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds