Wall clock time and date at job start Tue Mar 31 2020 13:38:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31506 * 1
3 3 Si 1.86796 * 120.00300 * 2 1
4 4 H 1.48492 * 109.47431 * 270.00570 * 3 2 1
5 5 H 1.48504 * 109.46706 * 30.00448 * 3 2 1
6 6 H 1.48499 * 109.47343 * 149.99927 * 3 2 1
7 7 C 1.37879 * 120.00152 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99610 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00436 * 179.97438 * 7 2 1
10 10 O 1.42897 * 109.47390 * 179.97438 * 9 7 2
11 11 C 1.35895 * 117.00141 * 179.97438 * 10 9 7
12 12 C 1.38825 * 119.93173 * 179.97438 * 11 10 9
13 13 C 1.37910 * 120.06954 * 180.02562 * 12 11 10
14 14 C 1.39415 * 119.93046 * 359.97438 * 13 12 11
15 15 C 1.48287 * 120.06986 * 179.97438 * 14 13 12
16 16 C 1.39495 * 120.56408 * 304.23280 * 15 14 13
17 17 C 1.38607 * 118.38822 * 179.76071 * 16 15 14
18 18 C 1.38163 * 119.45395 * 0.49614 * 17 16 15
19 19 N 1.31974 * 121.11951 * 359.76211 * 18 17 16
20 20 C 1.32309 * 121.74920 * 359.97438 * 19 18 17
21 21 N 1.38843 * 119.78390 * 179.97438 * 20 19 18
22 22 C 1.48531 * 111.00229 * 307.58627 * 21 20 19
23 23 C 1.54943 * 103.22560 * 159.72330 * 22 21 20
24 24 C 1.54596 * 102.91906 * 322.58617 * 23 22 21
25 25 C 1.47897 * 110.99846 * 64.98793 * 21 20 19
26 26 C 1.39409 * 119.85669 * 0.24560 * 14 13 12
27 27 C 1.37904 * 119.93316 * 359.51501 * 26 14 13
28 28 H 0.96999 * 120.00591 * 359.97438 * 1 2 3
29 29 H 1.09005 * 109.47173 * 59.99420 * 9 7 2
30 30 H 1.09008 * 109.47066 * 299.99928 * 9 7 2
31 31 H 1.08000 * 119.96256 * 359.97438 * 12 11 10
32 32 H 1.07996 * 120.03631 * 180.02562 * 13 12 11
33 33 H 1.08001 * 120.80692 * 0.02562 * 16 15 14
34 34 H 1.08007 * 120.27638 * 180.24221 * 17 16 15
35 35 H 1.07999 * 119.43987 * 179.75216 * 18 17 16
36 36 H 1.08993 * 110.66964 * 278.15890 * 22 21 20
37 37 H 1.08999 * 110.66340 * 41.29130 * 22 21 20
38 38 H 1.08994 * 110.72069 * 204.22949 * 23 22 21
39 39 H 1.08989 * 110.72038 * 80.94312 * 23 22 21
40 40 H 1.09004 * 110.30898 * 263.04013 * 24 23 22
41 41 H 1.08997 * 110.30848 * 140.87445 * 24 23 22
42 42 H 1.08998 * 109.92105 * 333.50515 * 25 21 20
43 43 H 1.09001 * 109.92169 * 94.80287 * 25 21 20
44 44 H 1.08007 * 120.03091 * 179.75035 * 26 14 13
45 45 H 1.08001 * 119.96918 * 180.23015 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6176 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6525 0.7002
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4644 -2.1293 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 8 3.9878 -2.5414 -0.0010
11 6 5.3350 -2.7195 -0.0020
12 6 5.8641 -4.0030 -0.0014
13 6 7.2308 -4.1870 -0.0019
14 6 8.0814 -3.0824 -0.0036
15 6 9.5515 -3.2767 -0.0035
16 6 10.1664 -4.0381 0.9904
17 6 11.5428 -4.1945 0.9441
18 6 12.2615 -3.5895 -0.0690
19 7 11.6592 -2.8689 -0.9962
20 6 10.3478 -2.6937 -0.9991
21 7 9.7566 -1.9269 -1.9942
22 6 10.4083 -0.5963 -2.0988
23 6 10.0180 -0.1212 -3.5210
24 6 10.0736 -1.4258 -4.3487
25 6 9.9205 -2.5616 -3.3200
26 6 7.5470 -1.7948 0.0005
27 6 6.1794 -1.6175 -0.0040
28 1 -0.4851 0.8400 0.0004
29 1 3.8752 -0.6804 0.8888
30 1 3.8745 -0.6801 -0.8912
31 1 5.2046 -4.8582 0.0003
32 1 7.6418 -5.1857 -0.0019
33 1 9.5836 -4.4983 1.7747
34 1 12.0499 -4.7811 1.6960
35 1 13.3345 -3.7081 -0.1026
36 1 10.0153 0.0849 -1.3443
37 1 11.4905 -0.6899 -2.0080
38 1 10.7390 0.6048 -3.8965
39 1 9.0110 0.2957 -3.5255
40 1 11.0315 -1.5073 -4.8625
41 1 9.2545 -1.4532 -5.0672
42 1 10.8119 -3.1888 -3.3239
43 1 9.0409 -3.1604 -3.5564
44 1 8.2033 -0.9371 0.0033
45 1 5.7647 -0.6202 -0.0046
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001236133160.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:38:16
Heat of formation + Delta-G solvation = 18.613775 kcal
Electronic energy + Delta-G solvation = -26676.227887 eV
Core-core repulsion = 23044.230800 eV
Total energy + Delta-G solvation = -3631.997088 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.81460 -40.76771 -39.15879 -38.29321 -35.04934 -33.89334 -33.81658 -32.04282
-31.09332 -30.32802 -29.87421 -28.81796 -25.30905 -24.55787 -24.39984 -23.04824
-22.00594 -21.94110 -21.76746 -19.56126 -18.61060 -18.39378 -17.75440 -17.40376
-16.86654 -16.60120 -16.54711 -16.07385 -15.80220 -15.38990 -15.20647 -14.82737
-14.64727 -14.45648 -14.27550 -14.04598 -13.85314 -13.74509 -13.51746 -13.27957
-13.13411 -13.06986 -12.85395 -12.43225 -12.29853 -12.15535 -12.04954 -11.94993
-11.82070 -11.48900 -11.40202 -10.93091 -10.75062 -10.69893 -9.96649 -9.87363
-9.60238 -8.80435 -8.44663 -6.55343 -0.10850 0.22741 0.46403 0.69363
1.30575 1.33140 1.43436 2.23478 2.58102 2.68020 2.71870 2.86966
2.91621 3.43186 3.65851 3.83130 3.85914 3.94091 4.00236 4.03577
4.09459 4.21149 4.32715 4.33976 4.39129 4.46415 4.56154 4.57204
4.66894 4.72964 4.75471 4.77144 4.85713 4.90905 4.99041 5.06341
5.10491 5.18769 5.20981 5.23858 5.25330 5.35270 5.53490 5.60941
5.63184 5.72468 5.80950 6.02720 6.30723 6.49021 6.76347 6.94800
7.08877 8.71934
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.014621 B = 0.003239 C = 0.002869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1914.557311 B = 8641.425543 C = 9758.491877
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.022 3.978
3 Si 0.949 3.051
4 H -0.256 1.256
5 H -0.268 1.268
6 H -0.245 1.245
7 C -0.555 4.555
8 H 0.036 0.964
9 C 0.183 3.817
10 O -0.333 6.333
11 C 0.114 3.886
12 C -0.169 4.169
13 C -0.058 4.058
14 C -0.081 4.081
15 C -0.072 4.072
16 C -0.066 4.066
17 C -0.163 4.163
18 C 0.098 3.902
19 N -0.529 5.529
20 C 0.277 3.723
21 N -0.476 5.476
22 C 0.041 3.959
23 C -0.118 4.118
24 C -0.123 4.123
25 C 0.046 3.954
26 C -0.032 4.032
27 C -0.224 4.224
28 H 0.277 0.723
29 H 0.026 0.974
30 H 0.023 0.977
31 H 0.134 0.866
32 H 0.152 0.848
33 H 0.156 0.844
34 H 0.172 0.828
35 H 0.181 0.819
36 H 0.076 0.924
37 H 0.059 0.941
38 H 0.091 0.909
39 H 0.070 0.930
40 H 0.080 0.920
41 H 0.077 0.923
42 H 0.047 0.953
43 H 0.069 0.931
44 H 0.127 0.873
45 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 30.571 -4.980 -2.053 31.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.178 4.178
3 Si 0.769 3.231
4 H -0.181 1.181
5 H -0.193 1.193
6 H -0.168 1.168
7 C -0.593 4.593
8 H 0.054 0.946
9 C 0.109 3.891
10 O -0.247 6.247
11 C 0.068 3.932
12 C -0.187 4.187
13 C -0.076 4.076
14 C -0.082 4.082
15 C -0.075 4.075
16 C -0.092 4.092
17 C -0.182 4.182
18 C -0.060 4.060
19 N -0.241 5.241
20 C 0.049 3.951
21 N -0.199 5.199
22 C -0.086 4.086
23 C -0.156 4.156
24 C -0.161 4.161
25 C -0.081 4.081
26 C -0.050 4.050
27 C -0.243 4.243
28 H 0.086 0.914
29 H 0.043 0.957
30 H 0.041 0.959
31 H 0.152 0.848
32 H 0.170 0.830
33 H 0.173 0.827
34 H 0.189 0.811
35 H 0.198 0.802
36 H 0.095 0.905
37 H 0.077 0.923
38 H 0.109 0.891
39 H 0.088 0.912
40 H 0.099 0.901
41 H 0.096 0.904
42 H 0.066 0.934
43 H 0.088 0.912
44 H 0.145 0.855
45 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 30.176 -4.570 -2.590 30.629
hybrid contribution -0.306 0.346 0.408 0.616
sum 29.870 -4.224 -2.182 30.246
Atomic orbital electron populations
1.69992 1.08156 1.29115 1.50004 1.25741 0.95797 1.03178 0.93038
0.85705 0.79608 0.77636 0.80121 1.18067 1.19309 1.16811 1.21026
0.90054 0.94422 1.53754 0.94556 1.20622 0.93646 0.78535 0.96260
1.86073 1.19215 1.31852 1.87530 1.19710 0.82821 0.95471 0.95196
1.20496 0.95975 0.94225 1.08016 1.21087 0.90810 0.99065 0.96608
1.18322 0.91131 0.92944 1.05784 1.19410 0.92570 0.99648 0.95880
1.22000 0.95564 0.94979 0.96667 1.22421 0.93968 1.01169 1.00631
1.23118 1.01560 0.91794 0.89540 1.67667 1.11332 1.17697 1.27425
1.20098 0.87261 0.94485 0.93268 1.62835 1.50545 1.02941 1.03604
1.23274 0.97773 0.88805 0.98726 1.22475 1.02491 0.97445 0.93235
1.22369 1.02989 0.93437 0.97339 1.22835 1.00507 0.97480 0.87258
1.20833 0.92721 0.96925 0.94528 1.21282 0.94812 0.98049 1.10114
0.91418 0.95673 0.95888 0.84835 0.83022 0.82665 0.81100 0.80167
0.90526 0.92309 0.89060 0.91168 0.90148 0.90407 0.93403 0.91209
0.85541 0.86197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.18 13.96 21.45 0.30 -57.88 16
2 C 0.02 1.28 5.47 84.66 0.46 1.74 16
3 Si 0.95 42.72 27.47 68.60 1.88 44.60 16
4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16
5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
6 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16
7 C -0.56 -33.84 9.99 25.60 0.26 -33.59 16
8 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16
9 C 0.18 9.38 3.56 71.24 0.25 9.63 16
10 O -0.33 -16.42 10.12 -92.37 -0.93 -17.35 16
11 C 0.11 4.56 6.69 22.55 0.15 4.71 16
12 C -0.17 -5.54 9.97 22.33 0.22 -5.32 16
13 C -0.06 -1.52 9.62 22.48 0.22 -1.30 16
14 C -0.08 -2.16 5.14 -20.04 -0.10 -2.26 16
15 C -0.07 -1.63 5.43 -19.83 -0.11 -1.73 16
16 C -0.07 -1.10 9.77 22.66 0.22 -0.88 16
17 C -0.16 -2.02 10.09 22.34 0.23 -1.79 16
18 C 0.10 1.47 11.16 84.65 0.95 2.41 16
19 N -0.53 -11.24 8.83 -192.50 -1.70 -12.94 16
20 C 0.28 6.50 5.35 133.40 0.71 7.21 16
21 N -0.48 -11.23 3.95 -688.53 -2.72 -13.95 16
22 C 0.04 0.83 6.46 86.65 0.56 1.39 16
23 C -0.12 -2.03 7.06 31.80 0.22 -1.80 16
24 C -0.12 -2.10 6.93 31.47 0.22 -1.88 16
25 C 0.05 0.99 6.61 86.45 0.57 1.56 16
26 C -0.03 -0.96 8.89 22.47 0.20 -0.76 16
27 C -0.22 -8.07 9.02 22.33 0.20 -7.87 16
28 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16
29 H 0.03 1.25 6.72 -2.38 -0.02 1.23 16
30 H 0.02 1.13 7.08 -2.38 -0.02 1.12 16
31 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16
32 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16
33 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16
34 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16
35 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16
36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
37 H 0.06 1.23 7.28 -2.39 -0.02 1.21 16
38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
39 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16
40 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16
41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
42 H 0.05 1.06 7.38 -2.39 -0.02 1.04 16
43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
44 H 0.13 3.48 8.02 -2.91 -0.02 3.46 16
45 H 0.12 4.42 6.28 -2.91 -0.02 4.40 16
Total: -1.00 -72.50 370.53 3.19 -69.31
By element:
Atomic # 1 Polarization: 17.81 SS G_CDS: 0.93 Total: 18.74 kcal
Atomic # 6 Polarization: -35.96 SS G_CDS: 5.43 Total: -30.53 kcal
Atomic # 7 Polarization: -80.65 SS G_CDS: -4.12 Total: -84.77 kcal
Atomic # 8 Polarization: -16.42 SS G_CDS: -0.93 Total: -17.35 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal
Total: -72.50 3.19 -69.31 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001236133160.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.924 kcal
(2) G-P(sol) polarization free energy of solvation -72.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds