Wall clock time and date at job start Tue Mar 31 2020 14:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38923 * 119.24249 * 2 1 4 4 C 1.36855 * 119.79853 * 180.02562 * 3 2 1 5 5 C 1.41166 * 118.39357 * 0.02562 * 4 3 2 6 6 C 1.40830 * 120.72221 * 180.02562 * 5 4 3 7 7 H 1.08005 * 120.00221 * 151.17112 * 6 5 4 8 8 C 1.40152 * 120.00158 * 331.17574 * 6 5 4 9 9 N 1.30722 * 119.99868 * 348.83717 * 8 6 5 10 10 Si 1.86803 * 120.00220 * 168.83775 * 8 6 5 11 11 H 1.48505 * 109.47011 * 59.99969 * 10 8 6 12 12 H 1.48497 * 109.47094 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47107 * 299.99810 * 10 8 6 14 14 C 1.41883 * 118.55425 * 359.97438 * 5 4 3 15 15 C 1.47753 * 119.99594 * 179.97438 * 14 5 4 16 16 C 1.39794 * 120.00637 * 136.20892 * 15 14 5 17 17 C 1.37610 * 119.99163 * 180.02562 * 16 15 14 18 18 C 1.39744 * 120.00970 * 0.02562 * 17 16 15 19 19 C 1.47758 * 119.99544 * 179.97438 * 18 17 16 20 20 O 1.21561 * 119.99971 * 359.72416 * 19 18 17 21 21 N 1.34783 * 119.99592 * 179.97438 * 19 18 17 22 22 C 1.46495 * 119.99351 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.47161 * 85.00209 * 22 21 19 24 24 C 1.53002 * 109.46904 * 204.99744 * 22 21 19 25 25 C 1.39752 * 120.00990 * 0.27033 * 18 17 16 26 26 C 1.37613 * 120.00319 * 359.45395 * 25 18 17 27 27 N 1.31690 * 119.24309 * 180.28435 * 2 1 3 28 28 H 1.09002 * 109.47087 * 89.99496 * 1 2 3 29 29 H 1.08999 * 109.47141 * 209.99605 * 1 2 3 30 30 H 1.08997 * 109.47179 * 330.00281 * 1 2 3 31 31 H 1.08000 * 120.10163 * 0.04916 * 3 2 1 32 32 H 1.07999 * 120.80121 * 179.97438 * 4 3 2 33 33 H 0.97002 * 119.99600 * 180.02562 * 9 8 6 34 34 H 1.07996 * 120.00705 * 0.05304 * 16 15 14 35 35 H 1.08003 * 119.99137 * 179.97438 * 17 16 15 36 36 H 0.96995 * 119.99999 * 359.97438 * 21 19 18 37 37 H 1.08996 * 109.47826 * 324.99986 * 22 21 19 38 38 H 1.08990 * 109.46867 * 299.99729 * 23 22 21 39 39 H 1.09002 * 109.46700 * 59.99573 * 23 22 21 40 40 H 1.08997 * 109.47201 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47091 * 60.00603 * 24 22 21 42 42 H 1.09006 * 109.47408 * 180.02562 * 24 22 21 43 43 H 1.08997 * 109.47761 * 300.00397 * 24 22 21 44 44 H 1.08000 * 119.99901 * 179.72510 * 25 18 17 45 45 H 1.07994 * 119.99909 * 180.29550 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2122 0.0000 4 6 3.5542 1.2255 -0.0005 5 6 4.2375 -0.0098 -0.0016 6 6 5.6451 -0.0534 -0.0017 7 1 6.1595 -0.8895 0.4486 8 6 6.3784 0.9883 -0.5859 9 7 5.7708 1.8850 -1.3178 10 14 8.2242 1.0955 -0.3188 11 1 8.8719 -0.1353 -0.8395 12 1 8.7605 2.2787 -1.0381 13 1 8.5074 1.2277 1.1328 14 6 3.4752 -1.2065 -0.0016 15 6 4.1576 -2.5170 -0.0033 16 6 3.7064 -3.5412 0.8343 17 6 4.3425 -4.7615 0.8329 18 6 5.4398 -4.9767 -0.0053 19 6 6.1230 -6.2868 -0.0062 20 8 5.7336 -7.1758 0.7258 21 7 7.1809 -6.4946 -0.8150 22 6 7.8586 -7.7934 -0.8154 23 6 7.1314 -8.7477 -1.7649 24 6 9.3048 -7.6139 -1.2816 25 6 5.8949 -3.9509 -0.8382 26 6 5.2556 -2.7323 -0.8413 27 7 2.1503 -1.1491 -0.0057 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6350 2.1413 0.0008 32 1 4.0981 2.1584 -0.0010 33 1 6.2785 2.6057 -1.7225 34 1 2.8584 -3.3751 1.4821 35 1 3.9942 -5.5527 1.4803 36 1 7.4936 -5.7841 -1.3967 37 1 7.8506 -8.2078 0.1926 38 1 6.1013 -8.8755 -1.4329 39 1 7.1395 -8.3332 -2.7731 40 1 7.6359 -9.7139 -1.7656 41 1 9.8228 -6.9341 -0.6051 42 1 9.8089 -8.5803 -1.2824 43 1 9.3129 -7.1995 -2.2897 44 1 6.7457 -4.1160 -1.4827 45 1 5.6044 -1.9412 -1.4885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240022686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:43 Heat of formation + Delta-G solvation = -5.975283 kcal Electronic energy + Delta-G solvation = -26386.280276 eV Core-core repulsion = 22753.216927 eV Total energy + Delta-G solvation = -3633.063349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.96799 -38.93055 -37.54645 -35.88965 -34.46647 -32.62762 -31.58282 -30.94115 -30.29214 -29.25581 -27.83508 -27.39620 -24.96963 -23.53740 -22.22327 -21.48916 -20.95189 -20.48333 -19.84689 -17.73255 -17.40912 -16.32855 -15.75630 -15.66595 -14.97757 -14.68822 -14.58088 -14.15887 -14.09947 -13.93798 -13.50292 -13.23586 -13.05947 -12.91609 -12.78678 -12.48082 -12.40900 -12.22681 -12.10417 -11.70713 -11.69449 -11.54900 -11.53090 -11.27467 -11.12019 -11.06258 -11.04546 -10.67779 -10.47509 -9.99045 -9.66947 -9.51100 -9.09989 -8.68699 -8.43239 -8.19063 -8.10295 -7.42420 -7.00277 -4.63594 1.23164 2.01284 2.44602 2.77172 2.91045 2.93562 3.04514 3.25517 3.33293 3.70707 4.36662 4.47005 4.65912 4.89756 5.05392 5.08050 5.22050 5.37830 5.40344 5.40960 5.51649 5.54244 5.59235 5.74925 5.90934 5.94373 5.97708 6.01028 6.10221 6.11318 6.21560 6.34523 6.41885 6.45814 6.55053 6.57313 6.70470 6.77466 6.84028 6.89115 6.93452 7.12517 7.31249 7.44850 7.56394 7.62743 7.72532 7.79727 8.24184 8.39921 8.46354 8.53066 9.45682 9.87409 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003783 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.021977 B = 7400.715198 C = 9479.863469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.142 4.142 4 C -0.123 4.123 5 C 0.086 3.914 6 C -0.439 4.439 7 H 0.089 0.911 8 C 0.074 3.926 9 N -0.786 5.786 10 Si 0.912 3.088 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.261 1.261 14 C 0.004 3.996 15 C 0.059 3.941 16 C -0.122 4.122 17 C -0.062 4.062 18 C -0.169 4.169 19 C 0.567 3.433 20 O -0.549 6.549 21 N -0.729 5.729 22 C 0.136 3.864 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.092 4.092 26 C -0.105 4.105 27 N -0.446 5.446 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.287 0.713 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -8.441 -1.955 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.162 4.162 4 C -0.149 4.149 5 C 0.082 3.918 6 C -0.468 4.468 7 H 0.107 0.893 8 C -0.146 4.146 9 N -0.410 5.410 10 Si 0.735 3.265 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.133 4.133 15 C 0.058 3.942 16 C -0.141 4.141 17 C -0.081 4.081 18 C -0.172 4.172 19 C 0.357 3.643 20 O -0.428 6.428 21 N -0.382 5.382 22 C 0.032 3.968 23 C -0.222 4.222 24 C -0.219 4.219 25 C -0.111 4.111 26 C -0.124 4.124 27 N -0.154 5.154 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.235 0.765 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.133 0.867 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.569 -9.636 -1.598 10.784 hybrid contribution 1.491 1.495 -0.364 2.143 sum 6.060 -8.141 -1.962 10.337 Atomic orbital electron populations 1.20299 0.91400 1.00954 1.00614 1.20295 0.94933 0.88486 1.10936 1.21300 0.95475 0.97207 1.02244 1.21463 0.92611 0.98917 1.01923 1.18319 0.94095 0.90753 0.88643 1.19615 0.90995 1.05089 1.31090 0.89283 1.26017 1.01740 0.94017 0.92810 1.69704 1.38992 1.10888 1.21458 0.86278 0.81154 0.79004 0.80041 1.18497 1.20091 1.18538 1.19438 0.88481 0.91216 1.14191 1.18681 0.92230 0.91426 0.91838 1.21243 1.00389 0.92504 0.99969 1.21006 0.93596 0.96874 0.96649 1.19671 1.00469 0.93585 1.03488 1.18442 0.79325 0.87652 0.78885 1.90710 1.65366 1.45403 1.41330 1.46049 1.32676 1.15434 1.44044 1.20893 0.91358 0.83865 1.00696 1.22192 1.01538 0.99002 0.99459 1.22083 0.95140 1.02819 1.01813 1.21038 0.99080 0.93020 0.97994 1.21404 0.95536 0.96458 0.99020 1.66829 1.09500 1.29344 1.09755 0.93081 0.92493 0.92815 0.88173 0.85328 0.90222 0.85767 0.85640 0.76467 0.89531 0.91987 0.92508 0.91863 0.91891 0.91074 0.92047 0.86654 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.94 16 2 C 0.00 -0.08 6.79 -82.40 -0.56 -0.64 16 3 C -0.14 -3.13 9.65 -39.83 -0.38 -3.51 16 4 C -0.12 -2.96 8.72 -38.97 -0.34 -3.30 16 5 C 0.09 2.12 5.54 -106.41 -0.59 1.53 16 6 C -0.44 -10.31 6.70 -37.88 -0.25 -10.56 16 7 H 0.09 2.04 6.50 -52.48 -0.34 1.70 16 8 C 0.07 1.64 5.27 -17.31 -0.09 1.55 16 9 N -0.79 -18.14 10.90 55.56 0.61 -17.54 16 10 Si 0.91 16.82 29.58 -169.99 -5.03 11.79 16 11 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 12 H -0.28 -5.00 7.11 56.52 0.40 -4.59 16 13 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 14 C 0.00 0.09 6.42 -82.25 -0.53 -0.44 16 15 C 0.06 1.26 5.26 -104.84 -0.55 0.71 16 16 C -0.12 -2.37 9.64 -39.23 -0.38 -2.75 16 17 C -0.06 -1.12 9.57 -39.25 -0.38 -1.49 16 18 C -0.17 -2.86 5.88 -104.88 -0.62 -3.48 16 19 C 0.57 9.13 7.73 -12.37 -0.10 9.04 16 20 O -0.55 -10.35 15.99 5.31 0.08 -10.27 16 21 N -0.73 -8.98 5.03 -54.78 -0.28 -9.25 16 22 C 0.14 1.43 3.19 -67.93 -0.22 1.22 16 23 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 24 C -0.16 -1.23 9.38 37.16 0.35 -0.88 16 25 C -0.09 -1.50 9.52 -39.24 -0.37 -1.87 16 26 C -0.11 -2.03 7.83 -39.23 -0.31 -2.34 16 27 N -0.45 -10.54 10.05 -5.45 -0.05 -10.59 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 32 H 0.13 3.11 6.34 -52.49 -0.33 2.78 16 33 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 34 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.13 2.13 7.64 -52.48 -0.40 1.73 16 36 H 0.40 4.13 6.62 -40.82 -0.27 3.85 16 37 H 0.09 1.04 7.57 -51.93 -0.39 0.65 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.12 1.46 6.38 -52.49 -0.34 1.13 16 45 H 0.14 2.81 6.74 -52.49 -0.35 2.46 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -27.79 375.00 -9.82 -37.61 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.21 Total: 12.01 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -4.59 Total: -19.41 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.28 Total: -37.39 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.79 -9.82 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240022686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.630 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds