Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38923 * 119.24249 * 2 1 4 4 C 1.36855 * 119.79853 * 180.02562 * 3 2 1 5 5 C 1.41166 * 118.39357 * 0.02562 * 4 3 2 6 6 C 1.40830 * 120.72221 * 180.02562 * 5 4 3 7 7 H 1.08005 * 120.00221 * 151.17112 * 6 5 4 8 8 C 1.40152 * 120.00158 * 331.17574 * 6 5 4 9 9 N 1.30722 * 119.99868 * 348.83717 * 8 6 5 10 10 Si 1.86803 * 120.00220 * 168.83775 * 8 6 5 11 11 H 1.48505 * 109.47011 * 59.99969 * 10 8 6 12 12 H 1.48497 * 109.47094 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47107 * 299.99810 * 10 8 6 14 14 C 1.41883 * 118.55425 * 359.97438 * 5 4 3 15 15 C 1.47753 * 119.99594 * 179.97438 * 14 5 4 16 16 C 1.39794 * 120.00637 * 136.20892 * 15 14 5 17 17 C 1.37610 * 119.99163 * 180.02562 * 16 15 14 18 18 C 1.39744 * 120.00970 * 0.02562 * 17 16 15 19 19 C 1.47758 * 119.99544 * 179.97438 * 18 17 16 20 20 O 1.21561 * 119.99971 * 359.72416 * 19 18 17 21 21 N 1.34783 * 119.99592 * 179.97438 * 19 18 17 22 22 C 1.46495 * 119.99351 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.47161 * 85.00209 * 22 21 19 24 24 C 1.53002 * 109.46904 * 204.99744 * 22 21 19 25 25 C 1.39752 * 120.00990 * 0.27033 * 18 17 16 26 26 C 1.37613 * 120.00319 * 359.45395 * 25 18 17 27 27 N 1.31690 * 119.24309 * 180.28435 * 2 1 3 28 28 H 1.09002 * 109.47087 * 89.99496 * 1 2 3 29 29 H 1.08999 * 109.47141 * 209.99605 * 1 2 3 30 30 H 1.08997 * 109.47179 * 330.00281 * 1 2 3 31 31 H 1.08000 * 120.10163 * 0.04916 * 3 2 1 32 32 H 1.07999 * 120.80121 * 179.97438 * 4 3 2 33 33 H 0.97002 * 119.99600 * 180.02562 * 9 8 6 34 34 H 1.07996 * 120.00705 * 0.05304 * 16 15 14 35 35 H 1.08003 * 119.99137 * 179.97438 * 17 16 15 36 36 H 0.96995 * 119.99999 * 359.97438 * 21 19 18 37 37 H 1.08996 * 109.47826 * 324.99986 * 22 21 19 38 38 H 1.08990 * 109.46867 * 299.99729 * 23 22 21 39 39 H 1.09002 * 109.46700 * 59.99573 * 23 22 21 40 40 H 1.08997 * 109.47201 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47091 * 60.00603 * 24 22 21 42 42 H 1.09006 * 109.47408 * 180.02562 * 24 22 21 43 43 H 1.08997 * 109.47761 * 300.00397 * 24 22 21 44 44 H 1.08000 * 119.99901 * 179.72510 * 25 18 17 45 45 H 1.07994 * 119.99909 * 180.29550 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2122 0.0000 4 6 3.5542 1.2255 -0.0005 5 6 4.2375 -0.0098 -0.0016 6 6 5.6451 -0.0534 -0.0017 7 1 6.1595 -0.8895 0.4486 8 6 6.3784 0.9883 -0.5859 9 7 5.7708 1.8850 -1.3178 10 14 8.2242 1.0955 -0.3188 11 1 8.8719 -0.1353 -0.8395 12 1 8.7605 2.2787 -1.0381 13 1 8.5074 1.2277 1.1328 14 6 3.4752 -1.2065 -0.0016 15 6 4.1576 -2.5170 -0.0033 16 6 3.7064 -3.5412 0.8343 17 6 4.3425 -4.7615 0.8329 18 6 5.4398 -4.9767 -0.0053 19 6 6.1230 -6.2868 -0.0062 20 8 5.7336 -7.1758 0.7258 21 7 7.1809 -6.4946 -0.8150 22 6 7.8586 -7.7934 -0.8154 23 6 7.1314 -8.7477 -1.7649 24 6 9.3048 -7.6139 -1.2816 25 6 5.8949 -3.9509 -0.8382 26 6 5.2556 -2.7323 -0.8413 27 7 2.1503 -1.1491 -0.0057 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6350 2.1413 0.0008 32 1 4.0981 2.1584 -0.0010 33 1 6.2785 2.6057 -1.7225 34 1 2.8584 -3.3751 1.4821 35 1 3.9942 -5.5527 1.4803 36 1 7.4936 -5.7841 -1.3967 37 1 7.8506 -8.2078 0.1926 38 1 6.1013 -8.8755 -1.4329 39 1 7.1395 -8.3332 -2.7731 40 1 7.6359 -9.7139 -1.7656 41 1 9.8228 -6.9341 -0.6051 42 1 9.8089 -8.5803 -1.2824 43 1 9.3129 -7.1995 -2.2897 44 1 6.7457 -4.1160 -1.4827 45 1 5.6044 -1.9412 -1.4885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240022686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = -20.038075 kcal Electronic energy + Delta-G solvation = -26386.890084 eV Core-core repulsion = 22753.216927 eV Total energy + Delta-G solvation = -3633.673158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28962 -40.53170 -39.00354 -36.95127 -36.16545 -34.11963 -32.92648 -32.54594 -31.73398 -30.67211 -29.47137 -28.08018 -26.53040 -25.06026 -23.64979 -22.89056 -22.42600 -21.81294 -21.22655 -19.32074 -18.82849 -17.57091 -17.39516 -17.08107 -16.32249 -16.11352 -15.82347 -15.69863 -15.49020 -15.07994 -14.94778 -14.76645 -14.38737 -14.23893 -14.01302 -13.87927 -13.61096 -13.25907 -13.23468 -13.14314 -13.05872 -13.01897 -12.80339 -12.64110 -12.63085 -12.28947 -12.16164 -11.98587 -11.85369 -11.66875 -11.18568 -10.97722 -10.40398 -10.15965 -9.95659 -9.89575 -9.73304 -9.10345 -8.67631 -6.39967 -0.24265 0.54837 0.77664 1.06481 1.40359 1.50543 1.53029 1.93504 2.17339 2.18153 2.70558 2.97643 3.58868 3.70000 3.83096 3.94126 4.04465 4.07946 4.17101 4.33811 4.34307 4.44106 4.53246 4.62283 4.64043 4.75551 4.76759 4.92165 4.92511 4.94584 4.97300 4.99917 5.03803 5.12201 5.19868 5.23396 5.27668 5.32277 5.33484 5.39138 5.50996 5.55811 5.73203 5.82005 5.93910 6.03410 6.07777 6.48628 6.53684 6.72437 6.78005 7.20717 7.70346 8.22757 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003783 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.021977 B = 7400.715198 C = 9479.863469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.017 4.017 3 C -0.146 4.146 4 C -0.147 4.147 5 C 0.058 3.942 6 C -0.456 4.456 7 H 0.087 0.913 8 C 0.041 3.959 9 N -0.815 5.815 10 Si 0.976 3.024 11 H -0.249 1.249 12 H -0.268 1.268 13 H -0.265 1.265 14 C -0.011 4.011 15 C 0.031 3.969 16 C -0.126 4.126 17 C -0.065 4.065 18 C -0.164 4.164 19 C 0.567 3.433 20 O -0.580 6.580 21 N -0.712 5.712 22 C 0.130 3.870 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.074 4.074 26 C -0.112 4.112 27 N -0.466 5.466 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.293 0.707 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.157 0.843 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -9.497 -2.930 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.160 4.160 3 C -0.166 4.166 4 C -0.173 4.173 5 C 0.054 3.946 6 C -0.485 4.485 7 H 0.105 0.895 8 C -0.176 4.176 9 N -0.440 5.440 10 Si 0.796 3.204 11 H -0.172 1.172 12 H -0.193 1.193 13 H -0.189 1.189 14 C -0.147 4.147 15 C 0.030 3.970 16 C -0.145 4.145 17 C -0.084 4.084 18 C -0.168 4.168 19 C 0.356 3.644 20 O -0.462 6.462 21 N -0.365 5.365 22 C 0.027 3.973 23 C -0.218 4.218 24 C -0.211 4.211 25 C -0.093 4.093 26 C -0.131 4.131 27 N -0.174 5.174 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.175 0.825 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.421 -10.693 -2.603 12.741 hybrid contribution 0.874 1.735 -0.078 1.944 sum 7.295 -8.958 -2.681 11.860 Atomic orbital electron populations 1.20352 0.88141 1.02414 1.01813 1.21077 0.97233 0.88087 1.09580 1.21602 0.95016 0.98585 1.01407 1.21521 0.93660 0.98541 1.03550 1.18655 0.95071 0.91296 0.89597 1.19707 0.90873 1.05914 1.31970 0.89479 1.26755 1.05767 0.93162 0.91925 1.69752 1.40762 1.11455 1.22015 0.85311 0.75885 0.79584 0.79595 1.17238 1.19273 1.18906 1.19873 0.88817 0.92293 1.13764 1.18779 0.93535 0.91043 0.93655 1.21176 1.00553 0.92804 0.99958 1.21100 0.93923 0.96329 0.97019 1.19891 0.99867 0.94352 1.02642 1.18296 0.80077 0.86756 0.79281 1.90703 1.66514 1.46091 1.42890 1.46012 1.31151 1.16639 1.42685 1.21104 0.93174 0.82834 1.00218 1.22160 0.99976 1.00068 0.99596 1.22044 0.92671 1.04007 1.02344 1.21319 0.99285 0.91233 0.97444 1.21345 0.95458 0.97392 0.98902 1.66942 1.09667 1.30218 1.10608 0.91874 0.92164 0.90237 0.85460 0.86320 0.89575 0.86316 0.84955 0.75040 0.91317 0.94742 0.91368 0.89761 0.91955 0.89324 0.90678 0.82532 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.15 71.24 0.72 -1.62 16 2 C -0.02 -0.77 6.79 42.74 0.29 -0.48 16 3 C -0.15 -6.51 9.65 22.11 0.21 -6.30 16 4 C -0.15 -7.29 8.72 22.66 0.20 -7.10 16 5 C 0.06 2.97 5.54 -21.02 -0.12 2.86 16 6 C -0.46 -22.00 6.70 23.37 0.16 -21.85 16 7 H 0.09 4.10 6.50 -2.91 -0.02 4.08 16 8 C 0.04 1.84 5.27 85.32 0.45 2.29 16 9 N -0.82 -38.31 10.90 21.86 0.24 -38.08 16 10 Si 0.98 34.00 29.58 68.60 2.03 36.03 16 11 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 12 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 13 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 14 C -0.01 -0.52 6.42 42.45 0.27 -0.25 16 15 C 0.03 1.35 5.26 -20.01 -0.11 1.25 16 16 C -0.13 -5.02 9.64 22.50 0.22 -4.81 16 17 C -0.06 -2.32 9.57 22.49 0.22 -2.11 16 18 C -0.16 -5.37 5.88 -20.03 -0.12 -5.49 16 19 C 0.57 17.41 7.73 86.76 0.67 18.08 16 20 O -0.58 -21.53 15.99 -3.91 -0.06 -21.59 16 21 N -0.71 -15.72 5.03 -445.49 -2.24 -17.96 16 22 C 0.13 2.42 3.19 44.99 0.14 2.57 16 23 C -0.16 -2.78 9.48 71.98 0.68 -2.09 16 24 C -0.15 -1.78 9.38 71.98 0.68 -1.10 16 25 C -0.07 -2.29 9.52 22.49 0.21 -2.07 16 26 C -0.11 -4.33 7.83 22.50 0.18 -4.15 16 27 N -0.47 -22.58 10.05 -171.16 -1.72 -24.30 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 32 H 0.12 6.00 6.34 -2.91 -0.02 5.98 16 33 H 0.29 12.47 8.29 -92.71 -0.77 11.70 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 35 H 0.13 4.51 7.64 -2.91 -0.02 4.49 16 36 H 0.41 7.00 6.62 -92.71 -0.61 6.39 16 37 H 0.07 1.56 7.57 -2.39 -0.02 1.54 16 38 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.16 3.41 6.38 -2.91 -0.02 3.40 16 45 H 0.13 5.24 6.74 -2.91 -0.02 5.22 16 Total: -1.00 -62.69 375.00 3.60 -59.09 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.40 Total: 39.18 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.96 Total: -32.38 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -3.72 Total: -80.34 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Total: -62.69 3.60 -59.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240022686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.052 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds