Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37842 * 119.97611 * 2 1 4 4 C 1.39419 * 119.94973 * 179.79397 * 3 2 1 5 5 C 1.48299 * 120.04242 * 180.23583 * 4 3 2 6 6 C 1.40077 * 120.82988 * 359.94871 * 5 4 3 7 7 C 1.38471 * 119.42086 * 179.73088 * 6 5 4 8 8 N 1.31493 * 121.14937 * 0.55636 * 7 6 5 9 9 C 1.33657 * 121.80568 * 359.71851 * 8 7 6 10 10 C 1.41436 * 119.77824 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99991 * 179.97438 * 10 9 8 12 12 C 1.40032 * 119.99687 * 359.97403 * 10 9 8 13 13 N 1.30743 * 120.00292 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99672 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46690 * 90.00578 * 14 12 10 16 16 H 1.48496 * 109.47001 * 210.00172 * 14 12 10 17 17 H 1.48499 * 109.47176 * 330.00714 * 14 12 10 18 18 C 1.39370 * 120.82240 * 180.22864 * 5 4 3 19 19 C 1.39450 * 119.91040 * 0.45871 * 4 3 2 20 20 C 1.37811 * 119.95185 * 359.77534 * 19 4 3 21 21 C 1.39023 * 119.97598 * 180.27887 * 2 1 3 22 22 N 1.39487 * 119.95657 * 359.97438 * 21 2 1 23 23 C 1.47009 * 110.99975 * 243.63922 * 22 21 2 24 24 C 1.53101 * 109.25923 * 177.60333 * 23 22 21 25 25 O 1.43017 * 109.25707 * 56.84763 * 24 23 22 26 26 C 1.43015 * 113.73780 * 301.33151 * 25 24 23 27 27 C 1.47007 * 111.00277 * 119.99962 * 22 21 2 28 28 H 1.09002 * 109.47152 * 269.72206 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72307 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72288 * 1 2 3 31 31 H 1.08002 * 120.02538 * 0.02779 * 3 2 1 32 32 H 1.08000 * 120.28854 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.41906 * 180.30170 * 7 6 5 34 34 H 0.96993 * 119.99684 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.58626 * 359.97438 * 18 5 4 36 36 H 1.08002 * 120.02711 * 179.79501 * 19 4 3 37 37 H 1.07997 * 119.97479 * 179.97438 * 20 19 4 38 38 H 1.08999 * 109.50889 * 297.53789 * 23 22 21 39 39 H 1.09002 * 109.51533 * 57.66818 * 23 22 21 40 40 H 1.08996 * 109.51066 * 296.91313 * 24 23 22 41 41 H 1.09001 * 109.54573 * 176.80117 * 24 23 22 42 42 H 1.09001 * 109.50491 * 298.73228 * 26 25 24 43 43 H 1.09005 * 109.54313 * 178.62601 * 26 25 24 44 44 H 1.08999 * 109.50691 * 302.33145 * 27 22 21 45 45 H 1.08996 * 109.50744 * 62.46048 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1940 0.0000 4 6 3.5899 1.1934 0.0043 5 6 4.3329 2.4768 0.0096 6 6 3.6517 3.7008 0.0093 7 6 4.3747 4.8817 0.0200 8 7 5.6896 4.8742 0.0195 9 6 6.3875 3.7343 0.0144 10 6 7.8013 3.7763 0.0147 11 1 8.3688 2.8575 0.0109 12 6 8.4650 5.0093 0.0198 13 7 7.7780 6.1217 0.0248 14 14 10.3323 5.0648 0.0209 15 1 10.8276 5.0850 -1.3790 16 1 10.7907 6.2887 0.7259 17 1 10.8627 3.8647 0.7163 18 6 5.7265 2.4952 0.0092 19 6 4.2848 -0.0157 -0.0010 20 6 3.5923 -1.2072 -0.0059 21 6 2.2016 -1.2042 -0.0059 22 7 1.5028 -2.4114 -0.0112 23 6 1.7667 -3.1784 1.2149 24 6 0.9360 -4.4643 1.1948 25 8 1.2467 -5.2081 0.0135 26 6 1.0009 -4.4913 -1.1994 27 6 1.8322 -3.2057 -1.2036 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5095 31 1 1.6558 2.1294 0.0005 32 1 2.5719 3.7231 0.0047 33 1 3.8494 5.8253 0.0246 34 1 8.2379 6.9756 0.0287 35 1 6.2883 1.5727 0.0055 36 1 5.3648 -0.0183 -0.0010 37 1 4.1300 -2.1437 -0.0104 38 1 2.8260 -3.4302 1.2658 39 1 1.4918 -2.5811 2.0843 40 1 -0.1245 -4.2126 1.1981 41 1 1.1706 -5.0637 2.0745 42 1 -0.0578 -4.2404 -1.2658 43 1 1.2825 -5.1096 -2.0519 44 1 1.6051 -2.6282 -2.0997 45 1 2.8925 -3.4579 -1.1914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242883126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = 20.467095 kcal Electronic energy + Delta-G solvation = -26320.558254 eV Core-core repulsion = 22688.641532 eV Total energy + Delta-G solvation = -3631.916722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50318 -38.94509 -37.89702 -35.68051 -33.69073 -32.82883 -31.47389 -31.44296 -30.08454 -28.85768 -27.30852 -26.06444 -25.39467 -24.23460 -22.81522 -22.32295 -21.01622 -20.28568 -19.84098 -17.49171 -17.33735 -16.39422 -15.97562 -15.55227 -15.35402 -15.32177 -15.17375 -14.75910 -14.54242 -14.11008 -13.73932 -13.50612 -13.44001 -13.00100 -12.92092 -12.69453 -12.44349 -12.40189 -11.99578 -11.93245 -11.66001 -11.55248 -11.46406 -11.31087 -11.19537 -11.02989 -10.74758 -10.64017 -10.37337 -9.96927 -9.85165 -9.53641 -9.03759 -8.65599 -8.50990 -7.71632 -7.62500 -7.45040 -6.44871 -4.57917 1.22055 1.63005 2.71458 2.95538 3.06078 3.08819 3.15732 3.48340 3.65924 3.90920 4.11809 4.63475 4.74131 4.74271 4.87464 4.94663 4.97779 5.03156 5.06480 5.24439 5.28141 5.36226 5.49041 5.55444 5.57592 5.59153 5.71102 5.77204 5.84211 5.86824 5.87253 6.00207 6.05797 6.34426 6.39836 6.54887 6.60496 6.63182 6.66526 6.75563 6.84982 6.94482 6.99334 7.10910 7.26740 7.38966 7.50385 7.66781 7.95098 8.17105 8.60061 8.85724 10.05945 10.27193 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.002525 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.881887 B =11085.427540 C =11998.290616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.061 4.061 3 C -0.111 4.111 4 C -0.010 4.010 5 C -0.005 4.005 6 C -0.303 4.303 7 C 0.124 3.876 8 N -0.482 5.482 9 C 0.254 3.746 10 C -0.431 4.431 11 H 0.083 0.917 12 C 0.069 3.931 13 N -0.715 5.715 14 Si 0.907 3.093 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.251 4.251 19 C -0.110 4.110 20 C -0.142 4.142 21 C 0.061 3.939 22 N -0.492 5.492 23 C 0.022 3.978 24 C 0.065 3.935 25 O -0.387 6.387 26 C 0.065 3.935 27 C 0.020 3.980 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.273 0.727 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 -15.463 -0.048 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.010 4.010 5 C -0.011 4.011 6 C -0.326 4.326 7 C -0.041 4.041 8 N -0.194 5.194 9 C 0.129 3.871 10 C -0.463 4.463 11 H 0.101 0.899 12 C -0.157 4.157 13 N -0.336 5.336 14 Si 0.731 3.269 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.274 4.274 19 C -0.129 4.129 20 C -0.162 4.162 21 C -0.033 4.033 22 N -0.214 5.214 23 C -0.105 4.105 24 C -0.012 4.012 25 O -0.305 6.305 26 C -0.012 4.012 27 C -0.107 4.107 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.965 -14.549 -0.050 18.837 hybrid contribution 1.228 -0.551 0.022 1.346 sum -10.737 -15.100 -0.028 18.528 Atomic orbital electron populations 1.20605 0.90950 1.02342 1.01886 1.19627 0.96071 0.91161 0.99293 1.21138 0.93494 0.97366 1.00970 1.19112 0.92759 0.93008 0.96119 1.18596 0.93037 0.90731 0.98696 1.21341 0.98273 0.93121 1.19835 1.22463 0.91808 0.95685 0.94169 1.68726 1.05231 1.28838 1.16650 1.18553 0.93822 0.86229 0.88483 1.19623 0.90146 0.93473 1.43028 0.89851 1.26071 1.00576 0.95437 0.93597 1.70130 1.36828 0.98193 1.28466 0.86332 0.82356 0.78920 0.79261 1.19366 1.20062 1.18532 1.21872 0.92670 0.98504 1.14378 1.21169 1.00267 0.91286 1.00190 1.21411 0.94285 0.98062 1.02403 1.18418 0.90053 0.89925 1.04897 1.59685 1.56641 1.02889 1.02179 1.22842 0.99324 0.95169 0.93189 1.22681 0.98749 0.91665 0.88130 1.87980 1.87581 1.40839 1.14144 1.22679 0.99128 0.92061 0.87351 1.22858 0.99010 0.94926 0.93893 0.91802 0.90834 0.92303 0.85391 0.88455 0.86250 0.91557 0.88014 0.85609 0.86832 0.93505 0.89454 0.92207 0.88416 0.92222 0.88413 0.89434 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.76 36.01 0.35 -0.79 16 2 C -0.06 -0.86 5.89 -104.47 -0.62 -1.48 16 3 C -0.11 -1.81 9.09 -39.29 -0.36 -2.17 16 4 C -0.01 -0.19 5.88 -104.87 -0.62 -0.80 16 5 C 0.00 -0.10 5.91 -104.65 -0.62 -0.72 16 6 C -0.30 -6.67 9.51 -38.81 -0.37 -7.04 16 7 C 0.12 2.98 11.17 -17.61 -0.20 2.78 16 8 N -0.48 -13.23 7.85 -11.21 -0.09 -13.31 16 9 C 0.25 6.89 6.55 -85.02 -0.56 6.33 16 10 C -0.43 -11.46 9.14 -37.69 -0.34 -11.80 16 11 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 12 C 0.07 1.74 5.50 -17.34 -0.10 1.64 16 13 N -0.71 -18.97 11.46 55.55 0.64 -18.34 16 14 Si 0.91 18.45 29.56 -169.99 -5.02 13.42 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 18 C -0.25 -6.09 9.22 -38.33 -0.35 -6.45 16 19 C -0.11 -1.87 9.44 -39.29 -0.37 -2.24 16 20 C -0.14 -2.06 8.60 -39.43 -0.34 -2.40 16 21 C 0.06 0.83 4.71 -83.78 -0.39 0.44 16 22 N -0.49 -5.59 3.63 -170.79 -0.62 -6.21 16 23 C 0.02 0.22 5.40 -3.71 -0.02 0.20 16 24 C 0.06 0.56 7.01 37.21 0.26 0.83 16 25 O -0.39 -4.03 10.83 -35.23 -0.38 -4.41 16 26 C 0.06 0.56 7.01 37.21 0.26 0.83 16 27 C 0.02 0.21 5.36 -3.71 -0.02 0.19 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.13 1.98 6.27 -52.49 -0.33 1.65 16 32 H 0.10 1.86 6.31 -52.49 -0.33 1.53 16 33 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 34 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 35 H 0.10 2.27 6.32 -52.49 -0.33 1.94 16 36 H 0.13 2.12 6.28 -52.49 -0.33 1.79 16 37 H 0.11 1.48 7.02 -52.49 -0.37 1.11 16 38 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.51 7.20 -51.93 -0.37 0.14 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -29.68 363.29 -10.58 -40.26 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.18 Total: 5.78 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -4.39 Total: -22.67 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.07 Total: -37.87 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.38 Total: -4.41 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.68 -10.58 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242883126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.728 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds