Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37842 * 119.97611 * 2 1 4 4 C 1.39419 * 119.94973 * 179.79397 * 3 2 1 5 5 C 1.48299 * 120.04242 * 180.23583 * 4 3 2 6 6 C 1.40077 * 120.82988 * 359.94871 * 5 4 3 7 7 C 1.38471 * 119.42086 * 179.73088 * 6 5 4 8 8 N 1.31493 * 121.14937 * 0.55636 * 7 6 5 9 9 C 1.33657 * 121.80568 * 359.71851 * 8 7 6 10 10 C 1.41436 * 119.77824 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99991 * 179.97438 * 10 9 8 12 12 C 1.40032 * 119.99687 * 359.97403 * 10 9 8 13 13 N 1.30743 * 120.00292 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99672 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46690 * 90.00578 * 14 12 10 16 16 H 1.48496 * 109.47001 * 210.00172 * 14 12 10 17 17 H 1.48499 * 109.47176 * 330.00714 * 14 12 10 18 18 C 1.39370 * 120.82240 * 180.22864 * 5 4 3 19 19 C 1.39450 * 119.91040 * 0.45871 * 4 3 2 20 20 C 1.37811 * 119.95185 * 359.77534 * 19 4 3 21 21 C 1.39023 * 119.97598 * 180.27887 * 2 1 3 22 22 N 1.39487 * 119.95657 * 359.97438 * 21 2 1 23 23 C 1.47009 * 110.99975 * 243.63922 * 22 21 2 24 24 C 1.53101 * 109.25923 * 177.60333 * 23 22 21 25 25 O 1.43017 * 109.25707 * 56.84763 * 24 23 22 26 26 C 1.43015 * 113.73780 * 301.33151 * 25 24 23 27 27 C 1.47007 * 111.00277 * 119.99962 * 22 21 2 28 28 H 1.09002 * 109.47152 * 269.72206 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72307 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72288 * 1 2 3 31 31 H 1.08002 * 120.02538 * 0.02779 * 3 2 1 32 32 H 1.08000 * 120.28854 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.41906 * 180.30170 * 7 6 5 34 34 H 0.96993 * 119.99684 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.58626 * 359.97438 * 18 5 4 36 36 H 1.08002 * 120.02711 * 179.79501 * 19 4 3 37 37 H 1.07997 * 119.97479 * 179.97438 * 20 19 4 38 38 H 1.08999 * 109.50889 * 297.53789 * 23 22 21 39 39 H 1.09002 * 109.51533 * 57.66818 * 23 22 21 40 40 H 1.08996 * 109.51066 * 296.91313 * 24 23 22 41 41 H 1.09001 * 109.54573 * 176.80117 * 24 23 22 42 42 H 1.09001 * 109.50491 * 298.73228 * 26 25 24 43 43 H 1.09005 * 109.54313 * 178.62601 * 26 25 24 44 44 H 1.08999 * 109.50691 * 302.33145 * 27 22 21 45 45 H 1.08996 * 109.50744 * 62.46048 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1940 0.0000 4 6 3.5899 1.1934 0.0043 5 6 4.3329 2.4768 0.0096 6 6 3.6517 3.7008 0.0093 7 6 4.3747 4.8817 0.0200 8 7 5.6896 4.8742 0.0195 9 6 6.3875 3.7343 0.0144 10 6 7.8013 3.7763 0.0147 11 1 8.3688 2.8575 0.0109 12 6 8.4650 5.0093 0.0198 13 7 7.7780 6.1217 0.0248 14 14 10.3323 5.0648 0.0209 15 1 10.8276 5.0850 -1.3790 16 1 10.7907 6.2887 0.7259 17 1 10.8627 3.8647 0.7163 18 6 5.7265 2.4952 0.0092 19 6 4.2848 -0.0157 -0.0010 20 6 3.5923 -1.2072 -0.0059 21 6 2.2016 -1.2042 -0.0059 22 7 1.5028 -2.4114 -0.0112 23 6 1.7667 -3.1784 1.2149 24 6 0.9360 -4.4643 1.1948 25 8 1.2467 -5.2081 0.0135 26 6 1.0009 -4.4913 -1.1994 27 6 1.8322 -3.2057 -1.2036 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5095 31 1 1.6558 2.1294 0.0005 32 1 2.5719 3.7231 0.0047 33 1 3.8494 5.8253 0.0246 34 1 8.2379 6.9756 0.0287 35 1 6.2883 1.5727 0.0055 36 1 5.3648 -0.0183 -0.0010 37 1 4.1300 -2.1437 -0.0104 38 1 2.8260 -3.4302 1.2658 39 1 1.4918 -2.5811 2.0843 40 1 -0.1245 -4.2126 1.1981 41 1 1.1706 -5.0637 2.0745 42 1 -0.0578 -4.2404 -1.2658 43 1 1.2825 -5.1096 -2.0519 44 1 1.6051 -2.6282 -2.0997 45 1 2.8925 -3.4579 -1.1914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242883126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = 4.725525 kcal Electronic energy + Delta-G solvation = -26321.240859 eV Core-core repulsion = 22688.641532 eV Total energy + Delta-G solvation = -3632.599327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52410 -40.30314 -39.31895 -36.75955 -35.48409 -34.09404 -32.91535 -32.17448 -31.95237 -30.16156 -28.38707 -27.71927 -26.69811 -24.98128 -24.09781 -23.91905 -22.55975 -21.44946 -21.10848 -19.12359 -18.47261 -17.59301 -17.12692 -16.84940 -16.69031 -16.22561 -16.14552 -16.01844 -15.76266 -15.63421 -15.24951 -14.64677 -14.57994 -14.46389 -14.26275 -14.12853 -13.83916 -13.40721 -13.25581 -13.07962 -12.94060 -12.82967 -12.79918 -12.49814 -12.41412 -12.34356 -12.32379 -11.94789 -11.59215 -11.50956 -11.27683 -10.72275 -10.64474 -9.72897 -9.62492 -9.58653 -9.53559 -8.96857 -8.31982 -6.55397 -0.14596 0.40258 0.87298 1.31901 1.38519 1.51737 1.54318 2.20842 2.61812 2.69121 2.93765 2.95336 3.79407 3.81640 3.89659 3.90820 3.93492 3.99680 4.14867 4.18855 4.24175 4.24803 4.33673 4.42331 4.52641 4.59281 4.69299 4.71720 4.75312 4.77157 4.80610 4.92011 4.93409 4.95357 4.99112 5.01695 5.17793 5.23398 5.39133 5.45374 5.47133 5.55040 5.62845 5.77609 5.81524 5.92922 6.11663 6.16799 6.25490 6.33365 6.69773 6.92182 8.15827 8.43047 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.002525 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.881887 B =11085.427540 C =11998.290616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.061 4.061 3 C -0.109 4.109 4 C -0.044 4.044 5 C 0.001 3.999 6 C -0.296 4.296 7 C 0.104 3.896 8 N -0.520 5.520 9 C 0.223 3.777 10 C -0.470 4.470 11 H 0.087 0.913 12 C 0.023 3.977 13 N -0.757 5.757 14 Si 0.988 3.012 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.256 1.256 18 C -0.276 4.276 19 C -0.118 4.118 20 C -0.141 4.141 21 C 0.077 3.923 22 N -0.490 5.490 23 C 0.020 3.980 24 C 0.067 3.933 25 O -0.404 6.404 26 C 0.067 3.933 27 C 0.019 3.981 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.279 0.721 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.038 0.962 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -17.546 -0.042 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.062 4.062 3 C -0.128 4.128 4 C -0.044 4.044 5 C -0.006 4.006 6 C -0.319 4.319 7 C -0.059 4.059 8 N -0.234 5.234 9 C 0.098 3.902 10 C -0.502 4.502 11 H 0.105 0.895 12 C -0.198 4.198 13 N -0.379 5.379 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.179 1.179 18 C -0.298 4.298 19 C -0.137 4.137 20 C -0.160 4.160 21 C -0.017 4.017 22 N -0.212 5.212 23 C -0.106 4.106 24 C -0.009 4.009 25 O -0.322 6.322 26 C -0.009 4.009 27 C -0.108 4.108 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.788 -16.647 -0.044 21.616 hybrid contribution 1.531 -0.087 0.018 1.534 sum -12.257 -16.734 -0.026 20.742 Atomic orbital electron populations 1.20638 0.88453 1.03299 1.02887 1.19943 0.97782 0.90417 0.98087 1.21245 0.92413 0.98690 1.00414 1.19012 0.93803 0.91786 0.99836 1.18972 0.92591 0.92680 0.96309 1.21686 0.99885 0.92395 1.17919 1.22939 0.91331 0.97542 0.94133 1.68665 1.06819 1.29588 1.18322 1.18983 0.94680 0.87292 0.89206 1.19975 0.90634 0.94523 1.45049 0.89466 1.27008 1.05856 0.94490 0.92474 1.70228 1.39130 0.98908 1.29611 0.85135 0.75412 0.79202 0.79499 1.18663 1.19103 1.17925 1.21976 0.93988 0.97913 1.15926 1.21172 1.00059 0.91820 1.00656 1.21547 0.94959 0.97666 1.01878 1.18638 0.89737 0.91128 1.02225 1.59794 1.55828 1.02412 1.03203 1.22914 0.99246 0.95873 0.92610 1.22773 0.98903 0.90910 0.88341 1.87970 1.87773 1.41562 1.14937 1.22771 0.99338 0.91345 0.87475 1.22932 0.98947 0.95597 0.93352 0.90630 0.89997 0.91270 0.84611 0.85163 0.84100 0.90993 0.87392 0.86520 0.85398 0.94382 0.89166 0.91238 0.86693 0.91252 0.86691 0.89170 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.76 71.24 0.70 -1.14 16 2 C -0.06 -1.59 5.89 -19.77 -0.12 -1.70 16 3 C -0.11 -3.38 9.09 22.46 0.20 -3.17 16 4 C -0.04 -1.65 5.88 -20.02 -0.12 -1.77 16 5 C 0.00 0.03 5.91 -19.88 -0.12 -0.08 16 6 C -0.30 -13.07 9.51 22.77 0.22 -12.86 16 7 C 0.10 5.12 11.17 84.80 0.95 6.07 16 8 N -0.52 -29.83 7.85 -189.39 -1.49 -31.32 16 9 C 0.22 12.75 6.55 40.19 0.26 13.02 16 10 C -0.47 -26.22 9.14 23.49 0.21 -26.01 16 11 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 12 C 0.02 1.21 5.50 85.29 0.47 1.68 16 13 N -0.76 -41.73 11.46 21.84 0.25 -41.48 16 14 Si 0.99 38.77 29.56 68.60 2.03 40.79 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 18 C -0.28 -13.99 9.22 23.08 0.21 -13.78 16 19 C -0.12 -4.02 9.44 22.46 0.21 -3.81 16 20 C -0.14 -3.92 8.60 22.37 0.19 -3.73 16 21 C 0.08 1.93 4.71 38.31 0.18 2.11 16 22 N -0.49 -9.77 3.63 -694.26 -2.52 -12.29 16 23 C 0.02 0.36 5.40 86.32 0.47 0.83 16 24 C 0.07 0.97 7.01 72.02 0.50 1.47 16 25 O -0.40 -7.23 10.83 -148.98 -1.61 -8.85 16 26 C 0.07 0.97 7.01 72.02 0.50 1.47 16 27 C 0.02 0.33 5.36 86.32 0.46 0.79 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.45 7.45 -2.39 -0.02 1.43 16 30 H 0.07 1.20 8.08 -2.38 -0.02 1.18 16 31 H 0.14 3.90 6.27 -2.91 -0.02 3.88 16 32 H 0.13 4.76 6.31 -2.91 -0.02 4.74 16 33 H 0.14 6.05 8.06 -2.91 -0.02 6.03 16 34 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 35 H 0.11 5.12 6.32 -2.91 -0.02 5.11 16 36 H 0.12 4.09 6.28 -2.91 -0.02 4.07 16 37 H 0.13 3.16 7.02 -2.91 -0.02 3.14 16 38 H 0.04 0.75 7.39 -2.39 -0.02 0.74 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.04 0.76 7.20 -2.39 -0.02 0.75 16 Total: -1.00 -66.97 363.29 3.06 -63.91 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 1.00 Total: 29.84 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 5.39 Total: -40.61 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.75 Total: -85.08 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -1.61 Total: -8.85 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.79 kcal Total: -66.97 3.06 -63.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242883126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.638 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds