Wall clock time and date at job start Tue Mar 31 2020 14:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36205 * 119.94374 * 2 1 4 4 C 1.40951 * 119.88850 * 179.97438 * 3 2 1 5 5 C 1.40979 * 120.10950 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99654 * 337.51033 * 5 4 3 7 7 C 1.39969 * 119.99956 * 157.51304 * 5 4 3 8 8 N 1.30831 * 120.00016 * 330.68703 * 7 5 4 9 9 Si 1.86797 * 120.00154 * 150.69202 * 7 5 4 10 10 H 1.48500 * 109.47173 * 84.98927 * 9 7 5 11 11 H 1.48500 * 109.47172 * 204.98428 * 9 7 5 12 12 H 1.48491 * 109.47049 * 324.98614 * 9 7 5 13 13 C 1.40978 * 119.78286 * 0.02562 * 4 3 2 14 14 C 1.36179 * 119.88621 * 359.97438 * 13 4 3 15 15 C 1.40026 * 119.94429 * 179.72411 * 2 1 3 16 16 C 1.47781 * 119.88841 * 359.97438 * 15 2 1 17 17 C 1.39846 * 120.59438 * 244.79168 * 16 15 2 18 18 C 1.38435 * 118.36729 * 179.78101 * 17 16 15 19 19 C 1.38322 * 119.49368 * 0.49788 * 18 17 16 20 20 N 1.31938 * 121.19802 * 359.74233 * 19 18 17 21 21 C 1.32334 * 121.77090 * 359.97438 * 20 19 18 22 22 N 1.38571 * 119.81686 * 180.02562 * 21 20 19 23 23 C 1.47023 * 110.99680 * 53.82209 * 22 21 20 24 24 C 1.53099 * 109.25714 * 177.60734 * 23 22 21 25 25 O 1.43019 * 109.25728 * 56.84625 * 24 23 22 26 26 C 1.43011 * 113.73806 * 301.33020 * 25 24 23 27 27 C 1.47016 * 111.00389 * 290.18668 * 22 21 20 28 28 H 1.08999 * 109.46983 * 85.89702 * 1 2 3 29 29 H 1.09004 * 109.46947 * 325.89439 * 1 2 3 30 30 H 1.08998 * 109.46588 * 205.89560 * 1 2 3 31 31 H 1.08001 * 120.05913 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 33 33 H 1.08001 * 120.05972 * 180.02562 * 13 4 3 34 34 H 1.07992 * 119.94671 * 180.02562 * 14 13 4 35 35 H 1.08002 * 120.81649 * 359.97438 * 17 16 15 36 36 H 1.07999 * 120.25341 * 180.22489 * 18 17 16 37 37 H 1.08003 * 119.40116 * 179.72412 * 19 18 17 38 38 H 1.09000 * 109.50274 * 297.54264 * 23 22 21 39 39 H 1.08999 * 109.50504 * 57.66929 * 23 22 21 40 40 H 1.09000 * 109.50416 * 296.91483 * 24 23 22 41 41 H 1.08996 * 109.54025 * 176.80773 * 24 23 22 42 42 H 1.08999 * 109.50736 * 298.73444 * 26 25 24 43 43 H 1.09005 * 109.54150 * 178.62936 * 26 25 24 44 44 H 1.08991 * 109.50578 * 302.32804 * 27 22 21 45 45 H 1.09003 * 109.50325 * 62.45491 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1802 0.0000 4 6 3.5964 1.1789 0.0005 5 6 4.3048 2.3978 0.0011 6 1 3.8291 3.2989 -0.3567 7 6 5.6246 2.4399 0.4652 8 7 6.0224 1.5970 1.3833 9 14 6.8180 3.6998 -0.2260 10 1 6.6681 4.9802 0.5110 11 1 8.2083 3.2007 -0.0733 12 1 6.5265 3.9200 -1.6653 13 6 4.2955 -0.0454 0.0005 14 6 3.6067 -1.2201 0.0005 15 6 2.2060 -1.2133 0.0058 16 6 1.4633 -2.4910 0.0126 17 6 1.5494 -3.3585 1.1061 18 6 0.8307 -4.5410 1.0656 19 6 0.0638 -4.8341 -0.0476 20 7 0.0000 -4.0042 -1.0713 21 6 0.6622 -2.8586 -1.0819 22 7 0.5656 -2.0170 -2.1785 23 6 -0.8395 -1.7171 -2.4902 24 6 -0.8982 -0.7398 -3.6673 25 8 -0.2043 -1.3036 -4.7835 26 6 1.1672 -1.6074 -4.5152 27 6 1.2468 -2.5935 -3.3468 28 1 -0.3633 0.0735 -1.0250 29 1 -0.3633 0.8510 0.5763 30 1 -0.3632 -0.9245 0.4488 31 1 1.6469 2.1156 -0.0004 32 1 6.9369 1.6265 1.7053 33 1 5.3755 -0.0516 0.0014 34 1 4.1412 -2.1585 0.0010 35 1 2.1589 -3.1105 1.9624 36 1 0.8721 -5.2315 1.8950 37 1 -0.4927 -5.7592 -0.0795 38 1 -1.3580 -2.6383 -2.7559 39 1 -1.3175 -1.2677 -1.6198 40 1 -0.4266 0.2009 -3.3830 41 1 -1.9380 -0.5582 -3.9389 42 1 1.6987 -0.6919 -4.2557 43 1 1.6216 -2.0538 -5.3998 44 1 2.2916 -2.7838 -3.1017 45 1 0.7616 -3.5288 -3.6262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243466025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:24 Heat of formation + Delta-G solvation = 7.483541 kcal Electronic energy + Delta-G solvation = -27988.830446 eV Core-core repulsion = 24356.350715 eV Total energy + Delta-G solvation = -3632.479731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78588 -39.97106 -39.31796 -36.64041 -35.95420 -33.73526 -33.09378 -32.14518 -32.05546 -30.66962 -27.98532 -27.54508 -26.80023 -24.97668 -24.29621 -23.41355 -22.15543 -21.61880 -21.36216 -18.83463 -18.58806 -17.66150 -17.20574 -17.11448 -16.92770 -16.31885 -16.25667 -16.05430 -15.60740 -15.49483 -15.24779 -14.88454 -14.45840 -14.36416 -14.05918 -14.01837 -13.70856 -13.67972 -13.30881 -13.22543 -13.03761 -12.70937 -12.67062 -12.41417 -12.34637 -12.21280 -12.09400 -11.63454 -11.47550 -11.31657 -10.97643 -10.89133 -10.62158 -10.48650 -9.78841 -9.43771 -9.25106 -8.96981 -8.73376 -6.25524 0.12539 0.33887 1.01935 1.25497 1.37468 1.47050 1.56988 2.18862 2.57796 2.63980 2.85053 2.90858 3.59420 3.73116 3.89853 4.01982 4.09558 4.12089 4.16905 4.22269 4.28441 4.34699 4.38134 4.43466 4.46459 4.55805 4.66125 4.66766 4.77083 4.81751 4.89253 4.95531 4.99077 5.06140 5.13955 5.17239 5.21145 5.30439 5.39998 5.55129 5.63202 5.78206 5.82396 6.05860 6.12238 6.16033 6.27768 6.39807 6.42871 6.70565 6.94039 7.02068 7.09863 8.23307 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.004329 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.987191 B = 6466.607981 C = 7628.619257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.014 4.014 3 C -0.250 4.250 4 C 0.096 3.904 5 C -0.502 4.502 6 H 0.075 0.925 7 C 0.049 3.951 8 N -0.805 5.805 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.265 1.265 12 H -0.260 1.260 13 C -0.204 4.204 14 C -0.078 4.078 15 C -0.172 4.172 16 C -0.032 4.032 17 C -0.090 4.090 18 C -0.159 4.159 19 C 0.087 3.913 20 N -0.526 5.526 21 C 0.276 3.724 22 N -0.478 5.478 23 C 0.025 3.975 24 C 0.064 3.936 25 O -0.394 6.394 26 C 0.069 3.931 27 C 0.034 3.966 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.291 0.709 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.051 0.949 43 H 0.121 0.879 44 H 0.072 0.928 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 -9.132 -4.195 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 C -0.269 4.269 4 C 0.094 3.906 5 C -0.530 4.530 6 H 0.094 0.906 7 C -0.169 4.169 8 N -0.428 5.428 9 Si 0.790 3.210 10 H -0.183 1.183 11 H -0.189 1.189 12 H -0.184 1.184 13 C -0.223 4.223 14 C -0.096 4.096 15 C -0.174 4.174 16 C -0.035 4.035 17 C -0.116 4.116 18 C -0.178 4.178 19 C -0.072 4.072 20 N -0.238 5.238 21 C 0.049 3.951 22 N -0.201 5.201 23 C -0.102 4.102 24 C -0.013 4.013 25 O -0.313 6.313 26 C -0.008 4.008 27 C -0.093 4.093 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.185 0.815 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.339 -8.998 -4.829 13.839 hybrid contribution 1.282 0.194 0.911 1.584 sum -8.057 -8.804 -3.919 12.561 Atomic orbital electron populations 1.20819 0.91736 1.00516 1.02111 1.19216 0.95036 0.91722 0.95471 1.20568 0.93661 0.96314 1.16355 1.17865 0.92030 0.93319 0.87404 1.19723 0.98215 0.95972 1.39082 0.90649 1.26720 1.00138 0.98134 0.91941 1.69925 1.19565 1.34623 1.18725 0.85410 0.76931 0.78526 0.80103 1.18310 1.18939 1.18421 1.20604 0.98037 0.92499 1.11158 1.20462 0.93388 0.96229 0.99544 1.17707 0.91377 0.90571 1.17737 1.19536 0.96242 0.94613 0.93148 1.22005 0.98196 0.93927 0.97454 1.22347 0.97355 0.97365 1.00760 1.23028 0.97073 0.98513 0.88572 1.67647 1.22292 1.04137 1.29766 1.19841 0.94509 0.88754 0.92043 1.60039 1.15338 1.41118 1.03619 1.22860 0.87787 0.99738 0.99855 1.22804 0.98658 0.94820 0.84984 1.87926 1.23664 1.82921 1.36800 1.22687 0.82950 0.97665 0.97455 1.22678 0.99235 0.97082 0.90302 0.90140 0.92458 0.93487 0.89111 0.89786 0.89496 0.88850 0.84775 0.81504 0.80035 0.93272 0.89248 0.92735 0.85809 0.93087 0.86140 0.90983 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.34 7.80 71.24 0.56 -2.79 16 2 C -0.01 -0.62 5.62 -19.90 -0.11 -0.73 16 3 C -0.25 -12.29 9.38 22.46 0.21 -12.08 16 4 C 0.10 5.19 5.57 -21.27 -0.12 5.07 16 5 C -0.50 -27.04 8.95 23.36 0.21 -26.83 16 6 H 0.08 3.95 7.99 -2.91 -0.02 3.93 16 7 C 0.05 2.46 4.85 85.26 0.41 2.87 16 8 N -0.80 -41.57 11.58 21.83 0.25 -41.32 16 9 Si 0.97 37.59 29.65 68.60 2.03 39.62 16 10 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 11 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 12 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 13 C -0.20 -10.70 8.70 22.46 0.20 -10.50 16 14 C -0.08 -3.63 9.67 22.23 0.22 -3.42 16 15 C -0.17 -7.35 4.96 -19.88 -0.10 -7.45 16 16 C -0.03 -1.14 4.11 -19.81 -0.08 -1.22 16 17 C -0.09 -2.72 9.89 22.71 0.22 -2.50 16 18 C -0.16 -3.66 10.09 22.34 0.23 -3.43 16 19 C 0.09 2.06 11.17 84.70 0.95 3.01 16 20 N -0.53 -15.81 9.58 -192.31 -1.84 -17.65 16 21 C 0.28 9.19 4.53 133.57 0.60 9.80 16 22 N -0.48 -15.37 3.15 -699.95 -2.21 -17.57 16 23 C 0.02 0.68 4.27 86.31 0.37 1.05 16 24 C 0.06 1.60 6.95 72.02 0.50 2.10 16 25 O -0.39 -10.96 10.83 -148.98 -1.61 -12.58 16 26 C 0.07 1.87 7.01 72.01 0.50 2.38 16 27 C 0.03 1.02 5.54 86.31 0.48 1.50 16 28 H 0.08 2.60 5.16 -2.39 -0.01 2.59 16 29 H 0.06 1.88 8.11 -2.38 -0.02 1.86 16 30 H 0.05 1.60 6.61 -2.39 -0.02 1.58 16 31 H 0.09 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 33 H 0.09 4.77 6.43 -2.91 -0.02 4.75 16 34 H 0.09 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 37 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.05 1.40 7.81 -2.39 -0.02 1.38 16 39 H 0.09 2.41 5.87 -2.39 -0.01 2.40 16 40 H 0.05 1.47 8.01 -2.39 -0.02 1.45 16 41 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 43 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 44 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 45 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 Total: -1.00 -62.34 360.38 2.86 -59.48 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 1.00 Total: 33.19 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 5.24 Total: -43.17 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.80 Total: -76.55 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.61 Total: -12.58 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -62.34 2.86 -59.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243466025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.964 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds