Wall clock time and date at job start Tue Mar 31 2020 14:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38287 * 119.92786 * 2 1 4 4 C 1.38117 * 120.07003 * 180.02562 * 3 2 1 5 5 C 1.38871 * 119.92814 * 0.02562 * 4 3 2 6 6 N 1.39925 * 120.07111 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00187 * 292.12266 * 6 5 4 8 8 C 1.50699 * 109.46978 * 270.00091 * 7 6 5 9 9 H 1.07993 * 120.00321 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99722 * 179.97438 * 8 7 6 11 11 N 1.31524 * 119.99923 * 0.02562 * 10 8 7 12 12 Si 1.86790 * 119.99959 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47322 * 89.99936 * 12 10 8 14 14 H 1.48504 * 109.47337 * 209.99985 * 12 10 8 15 15 H 1.48501 * 109.47391 * 330.00223 * 12 10 8 16 16 C 1.34782 * 120.00026 * 112.12189 * 6 5 4 17 17 O 1.21292 * 119.99613 * 355.26941 * 16 6 5 18 18 C 1.50692 * 119.99907 * 175.26547 * 16 6 5 19 19 C 1.50703 * 109.47115 * 180.02562 * 18 16 6 20 20 C 1.38676 * 120.78826 * 265.02413 * 19 18 16 21 21 C 1.38187 * 119.16342 * 179.97438 * 20 19 18 22 22 N 1.31889 * 120.76120 * 0.02804 * 21 20 19 23 23 C 1.31852 * 121.72523 * 359.67942 * 22 21 20 24 24 C 1.38224 * 120.76594 * 0.57882 * 23 22 21 25 25 C 1.50699 * 120.41827 * 179.72874 * 24 23 22 26 26 C 1.38876 * 119.85844 * 0.27290 * 5 4 3 27 27 C 1.38110 * 119.92951 * 359.42501 * 26 5 4 28 28 H 1.09004 * 109.47260 * 89.99330 * 1 2 3 29 29 H 1.08994 * 109.47524 * 209.99644 * 1 2 3 30 30 H 1.09003 * 109.47331 * 329.99661 * 1 2 3 31 31 H 1.07994 * 119.96596 * 359.97438 * 3 2 1 32 32 H 1.07990 * 120.03586 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46845 * 29.99870 * 7 6 5 34 34 H 1.08994 * 109.47269 * 149.99625 * 7 6 5 35 35 H 0.96992 * 119.99704 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47298 * 60.00694 * 18 16 6 37 37 H 1.08991 * 109.47558 * 300.00164 * 18 16 6 38 38 H 1.07995 * 120.42061 * 359.96081 * 20 19 18 39 39 H 1.08000 * 119.61809 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.61311 * 180.29024 * 23 22 21 41 41 H 1.08999 * 109.47361 * 269.72211 * 25 24 23 42 42 H 1.09006 * 109.46927 * 149.72600 * 25 24 23 43 43 H 1.09005 * 109.47304 * 29.73135 * 25 24 23 44 44 H 1.08006 * 120.03354 * 179.72734 * 26 5 4 45 45 H 1.07998 * 119.96820 * 180.29383 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6731 0.0001 -0.0016 7 6 6.4056 0.4789 -1.1765 8 6 6.6568 -0.6727 -2.1155 9 1 6.3062 -1.6623 -1.8624 10 6 7.3342 -0.4628 -3.2980 11 7 7.7615 0.7423 -3.6061 12 14 7.6461 -1.8902 -4.4617 13 1 6.5159 -2.0053 -5.4181 14 1 8.9061 -1.6521 -5.2107 15 1 7.7642 -3.1483 -3.6815 16 6 6.3470 -0.4405 1.0793 17 8 5.7436 -0.7560 2.0830 18 6 7.8501 -0.5411 1.0407 19 6 8.3532 -1.0567 2.3644 20 6 8.7722 -0.1807 3.3545 21 6 9.2269 -0.6901 4.5559 22 7 9.2653 -1.9917 4.7654 23 6 8.8697 -2.8534 3.8491 24 6 8.4078 -2.4178 2.6214 25 6 7.9633 -3.4098 1.5776 26 6 3.5780 -1.2017 -0.0079 27 6 2.1969 -1.1984 -0.0010 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 1.6552 2.1327 -0.0004 32 1 4.1163 2.1381 -0.0010 33 1 5.8165 1.2414 -1.6860 34 1 7.3580 0.9055 -0.8618 35 1 8.2383 0.8899 -4.4377 36 1 8.2754 0.4440 0.8488 37 1 8.1482 -1.2263 0.2473 38 1 8.7437 0.8860 3.1887 39 1 9.5553 -0.0146 5.3319 40 1 8.9116 -3.9121 4.0587 41 1 8.8119 -3.6816 0.9499 42 1 7.1834 -2.9632 0.9607 43 1 7.5729 -4.3020 2.0672 44 1 4.1163 -2.1381 -0.0132 45 1 1.6552 -2.1326 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292456814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:32 Heat of formation + Delta-G solvation = 14.955039 kcal Electronic energy + Delta-G solvation = -27164.743114 eV Core-core repulsion = 23532.587372 eV Total energy + Delta-G solvation = -3632.155742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43751 -39.65200 -38.15677 -35.29819 -34.10638 -32.90209 -32.22432 -31.47077 -30.59018 -28.66425 -27.55288 -26.94180 -25.70210 -23.29852 -22.75354 -22.17270 -21.85825 -20.87426 -18.87808 -16.98350 -16.79336 -16.47369 -16.16053 -15.93487 -15.15701 -15.04147 -14.88716 -14.52203 -14.12590 -13.98367 -13.80285 -13.52996 -13.19630 -13.09173 -12.79268 -12.61006 -12.53078 -12.34989 -12.25024 -12.08836 -11.75088 -11.66983 -11.49488 -11.31818 -11.09996 -11.06504 -10.84667 -10.75433 -10.30592 -9.92106 -9.56274 -9.27019 -9.08405 -8.68445 -8.65433 -8.54638 -8.50415 -7.66366 -6.28899 -4.36876 1.34311 1.45503 1.68452 1.79784 3.16115 3.16437 3.24225 3.26925 3.66858 4.04706 4.12425 4.25899 4.62648 4.85064 4.93188 5.05059 5.12018 5.13438 5.15989 5.21620 5.31193 5.38102 5.53726 5.59944 5.69263 5.70604 5.76900 5.79639 5.83786 5.86923 5.90205 6.02748 6.08910 6.17241 6.18054 6.34498 6.39129 6.57994 6.62458 6.76443 6.89003 6.89964 6.93924 7.06404 7.19888 7.56897 7.66941 7.91070 8.08667 8.15317 8.65382 8.83994 9.31216 10.78015 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007792 B = 0.005279 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.777169 B = 5302.782434 C = 7698.780841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.120 4.120 5 C 0.172 3.828 6 N -0.561 5.561 7 C 0.238 3.762 8 C -0.539 4.539 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.526 3.474 17 O -0.551 6.551 18 C -0.102 4.102 19 C -0.012 4.012 20 C -0.158 4.158 21 C 0.086 3.914 22 N -0.490 5.490 23 C 0.093 3.907 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.103 4.103 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -1.625 7.719 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.131 4.131 4 C -0.140 4.140 5 C 0.081 3.919 6 N -0.289 5.289 7 C 0.119 3.881 8 C -0.578 4.578 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.315 3.685 17 O -0.429 6.429 18 C -0.142 4.142 19 C -0.021 4.021 20 C -0.178 4.178 21 C -0.071 4.071 22 N -0.199 5.199 23 C -0.064 4.064 24 C -0.120 4.120 25 C -0.171 4.171 26 C -0.122 4.122 27 C -0.131 4.131 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.830 -1.975 8.893 9.882 hybrid contribution 0.011 -0.243 -1.839 1.855 sum -3.819 -2.218 7.053 8.322 Atomic orbital electron populations 1.20716 0.91618 1.02231 1.01899 1.19797 0.95692 0.93233 1.01732 1.20770 0.93479 0.97296 1.01605 1.21180 0.94188 0.97458 1.01181 1.17532 0.83455 0.92838 0.98117 1.45935 1.03315 1.62524 1.17081 1.19599 0.91815 0.95691 0.80965 1.21402 1.37236 0.95126 1.04024 0.91982 1.24920 0.95102 0.95955 0.97608 1.69911 1.37647 1.20604 1.24536 0.86518 0.77872 0.82359 0.80923 1.20431 1.20967 1.19654 1.20262 0.89300 0.76577 0.82320 1.90676 1.70470 1.49918 1.31877 1.20713 0.93070 1.04812 0.95559 1.19787 0.94320 0.92872 0.95101 1.21998 1.00615 1.00749 0.94452 1.22575 0.96889 0.91773 0.95820 1.67588 1.15447 1.03638 1.33185 1.22530 0.95578 0.99282 0.89027 1.20754 0.99542 0.94603 0.97074 1.20764 1.01808 0.97371 0.97120 1.21189 0.94014 0.97607 0.99408 1.20802 0.93578 0.97309 1.01439 0.91545 0.91946 0.91943 0.86279 0.86081 0.94224 0.93970 0.92368 0.87665 0.86016 0.85066 0.83151 0.83195 0.90702 0.90868 0.91389 0.86351 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 2 C -0.10 -1.53 5.88 -104.59 -0.62 -2.15 16 3 C -0.11 -1.73 9.69 -39.61 -0.38 -2.11 16 4 C -0.12 -2.15 9.69 -39.39 -0.38 -2.53 16 5 C 0.17 3.42 4.74 -83.69 -0.40 3.02 16 6 N -0.56 -11.57 2.50 -114.74 -0.29 -11.85 16 7 C 0.24 5.37 4.88 -5.20 -0.03 5.35 16 8 C -0.54 -13.27 9.16 -34.44 -0.32 -13.58 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.13 16 10 C 0.07 1.71 5.46 -17.81 -0.10 1.61 16 11 N -0.89 -23.50 13.29 55.43 0.74 -22.76 16 12 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 C 0.53 10.51 6.85 -10.99 -0.08 10.43 16 17 O -0.55 -12.17 15.80 5.55 0.09 -12.09 16 18 C -0.10 -1.77 3.85 -29.04 -0.11 -1.88 16 19 C -0.01 -0.20 4.41 -104.32 -0.46 -0.66 16 20 C -0.16 -2.34 9.80 -39.44 -0.39 -2.73 16 21 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 22 N -0.49 -7.59 10.36 -13.25 -0.14 -7.72 16 23 C 0.09 1.36 10.86 -17.55 -0.19 1.17 16 24 C -0.12 -1.83 5.90 -104.49 -0.62 -2.44 16 25 C -0.11 -1.60 9.30 36.01 0.33 -1.26 16 26 C -0.10 -1.92 9.56 -39.39 -0.38 -2.30 16 27 C -0.11 -1.79 9.69 -39.61 -0.38 -2.17 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.04 0.96 7.86 -51.93 -0.41 0.56 16 34 H 0.04 0.95 6.47 -51.93 -0.34 0.62 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 36 H 0.11 1.70 7.19 -51.93 -0.37 1.33 16 37 H 0.12 2.17 6.87 -51.93 -0.36 1.81 16 38 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.19 6.35 -51.93 -0.33 0.86 16 43 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 44 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 45 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -29.78 381.54 -9.60 -39.39 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.41 Total: 6.56 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -4.32 Total: -12.02 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.31 Total: -42.34 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.78 -9.60 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292456814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.344 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds