Wall clock time and date at job start Tue Mar 31 2020 14:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38287 * 119.92786 * 2 1 4 4 C 1.38117 * 120.07003 * 180.02562 * 3 2 1 5 5 C 1.38871 * 119.92814 * 0.02562 * 4 3 2 6 6 N 1.39925 * 120.07111 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00187 * 292.12266 * 6 5 4 8 8 C 1.50699 * 109.46978 * 270.00091 * 7 6 5 9 9 H 1.07993 * 120.00321 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99722 * 179.97438 * 8 7 6 11 11 N 1.31524 * 119.99923 * 0.02562 * 10 8 7 12 12 Si 1.86790 * 119.99959 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47322 * 89.99936 * 12 10 8 14 14 H 1.48504 * 109.47337 * 209.99985 * 12 10 8 15 15 H 1.48501 * 109.47391 * 330.00223 * 12 10 8 16 16 C 1.34782 * 120.00026 * 112.12189 * 6 5 4 17 17 O 1.21292 * 119.99613 * 355.26941 * 16 6 5 18 18 C 1.50692 * 119.99907 * 175.26547 * 16 6 5 19 19 C 1.50703 * 109.47115 * 180.02562 * 18 16 6 20 20 C 1.38676 * 120.78826 * 265.02413 * 19 18 16 21 21 C 1.38187 * 119.16342 * 179.97438 * 20 19 18 22 22 N 1.31889 * 120.76120 * 0.02804 * 21 20 19 23 23 C 1.31852 * 121.72523 * 359.67942 * 22 21 20 24 24 C 1.38224 * 120.76594 * 0.57882 * 23 22 21 25 25 C 1.50699 * 120.41827 * 179.72874 * 24 23 22 26 26 C 1.38876 * 119.85844 * 0.27290 * 5 4 3 27 27 C 1.38110 * 119.92951 * 359.42501 * 26 5 4 28 28 H 1.09004 * 109.47260 * 89.99330 * 1 2 3 29 29 H 1.08994 * 109.47524 * 209.99644 * 1 2 3 30 30 H 1.09003 * 109.47331 * 329.99661 * 1 2 3 31 31 H 1.07994 * 119.96596 * 359.97438 * 3 2 1 32 32 H 1.07990 * 120.03586 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46845 * 29.99870 * 7 6 5 34 34 H 1.08994 * 109.47269 * 149.99625 * 7 6 5 35 35 H 0.96992 * 119.99704 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47298 * 60.00694 * 18 16 6 37 37 H 1.08991 * 109.47558 * 300.00164 * 18 16 6 38 38 H 1.07995 * 120.42061 * 359.96081 * 20 19 18 39 39 H 1.08000 * 119.61809 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.61311 * 180.29024 * 23 22 21 41 41 H 1.08999 * 109.47361 * 269.72211 * 25 24 23 42 42 H 1.09006 * 109.46927 * 149.72600 * 25 24 23 43 43 H 1.09005 * 109.47304 * 29.73135 * 25 24 23 44 44 H 1.08006 * 120.03354 * 179.72734 * 26 5 4 45 45 H 1.07998 * 119.96820 * 180.29383 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6731 0.0001 -0.0016 7 6 6.4056 0.4789 -1.1765 8 6 6.6568 -0.6727 -2.1155 9 1 6.3062 -1.6623 -1.8624 10 6 7.3342 -0.4628 -3.2980 11 7 7.7615 0.7423 -3.6061 12 14 7.6461 -1.8902 -4.4617 13 1 6.5159 -2.0053 -5.4181 14 1 8.9061 -1.6521 -5.2107 15 1 7.7642 -3.1483 -3.6815 16 6 6.3470 -0.4405 1.0793 17 8 5.7436 -0.7560 2.0830 18 6 7.8501 -0.5411 1.0407 19 6 8.3532 -1.0567 2.3644 20 6 8.7722 -0.1807 3.3545 21 6 9.2269 -0.6901 4.5559 22 7 9.2653 -1.9917 4.7654 23 6 8.8697 -2.8534 3.8491 24 6 8.4078 -2.4178 2.6214 25 6 7.9633 -3.4098 1.5776 26 6 3.5780 -1.2017 -0.0079 27 6 2.1969 -1.1984 -0.0010 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 1.6552 2.1327 -0.0004 32 1 4.1163 2.1381 -0.0010 33 1 5.8165 1.2414 -1.6860 34 1 7.3580 0.9055 -0.8618 35 1 8.2383 0.8899 -4.4377 36 1 8.2754 0.4440 0.8488 37 1 8.1482 -1.2263 0.2473 38 1 8.7437 0.8860 3.1887 39 1 9.5553 -0.0146 5.3319 40 1 8.9116 -3.9121 4.0587 41 1 8.8119 -3.6816 0.9499 42 1 7.1834 -2.9632 0.9607 43 1 7.5729 -4.3020 2.0672 44 1 4.1163 -2.1381 -0.0132 45 1 1.6552 -2.1326 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292456814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:32 Heat of formation + Delta-G solvation = 1.145361 kcal Electronic energy + Delta-G solvation = -27165.341947 eV Core-core repulsion = 23532.587372 eV Total energy + Delta-G solvation = -3632.754575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79797 -40.94753 -39.52839 -36.90542 -35.37729 -34.70130 -33.42498 -32.76941 -31.89594 -29.93343 -29.33475 -28.10570 -26.94173 -25.07870 -23.96622 -23.55351 -23.06665 -22.11901 -20.33289 -18.74234 -18.41769 -17.81581 -17.60017 -17.24288 -16.58951 -16.39688 -16.20587 -16.00921 -15.50161 -15.35071 -15.02462 -14.51508 -14.43579 -14.38860 -14.28456 -14.20902 -13.74450 -13.63803 -13.56415 -13.41418 -13.10744 -12.98681 -12.91870 -12.79027 -12.62100 -12.47005 -12.26795 -12.10838 -12.04521 -11.72729 -11.07809 -10.64396 -10.44703 -10.38069 -10.02838 -9.86963 -9.80158 -9.13756 -8.23492 -6.37933 0.21108 0.23482 0.36713 0.47514 1.39707 1.42179 1.50518 1.60904 2.16066 2.39902 2.79709 2.87560 3.07557 3.52630 3.64048 3.79362 3.83168 3.94863 4.01494 4.04694 4.06527 4.07896 4.40730 4.47227 4.50987 4.52136 4.54254 4.58138 4.72045 4.75363 4.82466 4.88563 4.90853 4.94360 5.02365 5.09146 5.14235 5.19847 5.20213 5.39353 5.43980 5.54986 5.66760 5.67554 5.78480 5.80690 5.99748 6.15239 6.43317 6.72890 7.01599 7.21067 7.35147 8.82282 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007792 B = 0.005279 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.777169 B = 5302.782434 C = 7698.780841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.137 4.137 5 C 0.130 3.870 6 N -0.561 5.561 7 C 0.254 3.746 8 C -0.543 4.543 9 H 0.053 0.947 10 C 0.026 3.974 11 N -0.918 5.918 12 Si 0.952 3.048 13 H -0.279 1.279 14 H -0.279 1.279 15 H -0.266 1.266 16 C 0.526 3.474 17 O -0.575 6.575 18 C -0.092 4.092 19 C -0.034 4.034 20 C -0.166 4.166 21 C 0.085 3.915 22 N -0.504 5.504 23 C 0.089 3.911 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.115 4.115 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.019 0.981 34 H 0.039 0.961 35 H 0.269 0.731 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.148 0.852 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -2.136 8.228 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.157 4.157 5 C 0.040 3.960 6 N -0.288 5.288 7 C 0.135 3.865 8 C -0.581 4.581 9 H 0.071 0.929 10 C -0.175 4.175 11 N -0.557 5.557 12 Si 0.778 3.222 13 H -0.204 1.204 14 H -0.204 1.204 15 H -0.190 1.190 16 C 0.316 3.684 17 O -0.455 6.455 18 C -0.132 4.132 19 C -0.042 4.042 20 C -0.185 4.185 21 C -0.072 4.072 22 N -0.213 5.213 23 C -0.067 4.067 24 C -0.133 4.133 25 C -0.167 4.167 26 C -0.145 4.145 27 C -0.133 4.133 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.170 0.830 32 H 0.139 0.861 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.200 0.800 40 H 0.194 0.806 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.035 -2.489 9.405 10.955 hybrid contribution 0.277 -0.056 -1.955 1.975 sum -4.759 -2.544 7.450 9.199 Atomic orbital electron populations 1.20798 0.88239 1.03894 1.03243 1.20312 0.98053 0.92302 0.99168 1.21185 0.92480 0.99187 1.00086 1.21360 0.95641 0.96751 1.01939 1.17906 0.83152 0.94181 1.00790 1.45855 1.04021 1.62422 1.16499 1.19236 0.91382 0.94579 0.81353 1.21546 1.36867 0.95167 1.04532 0.92863 1.25589 0.94936 0.98018 0.98926 1.69997 1.38420 1.22151 1.25094 0.85632 0.77697 0.79890 0.79011 1.20443 1.20435 1.19045 1.20645 0.90238 0.75773 0.81699 1.90636 1.71227 1.51064 1.32568 1.20605 0.91235 1.04957 0.96366 1.19868 0.95548 0.93827 0.94978 1.22253 1.00321 1.01533 0.94409 1.23091 0.95930 0.91913 0.96218 1.67667 1.15845 1.04297 1.33490 1.22940 0.94817 1.00570 0.88397 1.20959 0.99900 0.94562 0.97856 1.20743 1.01417 0.97652 0.96839 1.21255 0.95531 0.96664 1.01057 1.21153 0.92463 0.99269 1.00446 0.90153 0.90517 0.90173 0.83032 0.86145 0.96335 0.94272 0.92224 0.87015 0.86976 0.83460 0.80016 0.80588 0.89465 0.93681 0.89420 0.87847 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.23 0.71 -1.16 16 2 C -0.10 -2.66 5.88 -19.84 -0.12 -2.78 16 3 C -0.11 -3.23 9.69 22.25 0.22 -3.01 16 4 C -0.14 -4.98 9.69 22.39 0.22 -4.77 16 5 C 0.13 5.38 4.74 38.15 0.18 5.56 16 6 N -0.56 -24.29 2.50 -635.32 -1.59 -25.89 16 7 C 0.25 12.02 4.88 85.63 0.42 12.44 16 8 C -0.54 -27.53 9.16 25.60 0.23 -27.30 16 9 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 10 C 0.03 1.34 5.46 84.65 0.46 1.80 16 11 N -0.92 -49.29 13.29 21.45 0.28 -49.01 16 12 Si 0.95 40.76 29.54 68.60 2.03 42.79 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 14 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 16 C 0.53 21.97 6.85 87.65 0.60 22.57 16 17 O -0.57 -26.35 15.80 -3.07 -0.05 -26.40 16 18 C -0.09 -3.33 3.85 29.10 0.11 -3.22 16 19 C -0.03 -1.12 4.41 -19.67 -0.09 -1.21 16 20 C -0.17 -4.81 9.80 22.36 0.22 -4.60 16 21 C 0.08 2.28 11.18 84.67 0.95 3.22 16 22 N -0.50 -14.93 10.36 -195.84 -2.03 -16.96 16 23 C 0.09 2.53 10.86 84.69 0.92 3.45 16 24 C -0.13 -4.05 5.90 -19.78 -0.12 -4.17 16 25 C -0.11 -3.10 9.30 71.24 0.66 -2.44 16 26 C -0.13 -4.84 9.56 22.39 0.21 -4.63 16 27 C -0.11 -3.54 9.69 22.25 0.22 -3.32 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 30 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.12 4.21 8.06 -2.92 -0.02 4.19 16 33 H 0.02 0.95 7.86 -2.39 -0.02 0.93 16 34 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 35 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 36 H 0.11 3.77 7.19 -2.39 -0.02 3.76 16 37 H 0.11 4.22 6.87 -2.39 -0.02 4.20 16 38 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.52 6.35 -2.38 -0.02 1.51 16 43 H 0.09 2.07 8.09 -2.38 -0.02 2.05 16 44 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 45 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -65.27 381.54 5.64 -59.63 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.98 Total: 29.40 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 6.01 Total: -13.56 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -3.34 Total: -91.85 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -65.27 5.64 -59.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292456814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.777 kcal (2) G-P(sol) polarization free energy of solvation -65.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds