Wall clock time and date at job start Tue Mar 31 2020 14:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38243 * 120.00003 * 2 1 4 4 C 1.38238 * 119.99839 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99685 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00013 * 359.95707 * 4 3 2 7 7 C 1.38232 * 120.00304 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00193 * 179.69775 * 7 6 4 9 9 N 1.46497 * 109.46949 * 90.00218 * 8 7 6 10 10 C 1.34778 * 120.00337 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99809 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00372 * 180.02562 * 10 9 8 13 13 C 1.39958 * 119.99989 * 174.84904 * 12 10 9 14 14 C 1.39278 * 119.94459 * 145.76896 * 13 12 10 15 15 C 1.38497 * 120.42838 * 180.02562 * 14 13 12 16 16 C 1.37677 * 120.32073 * 359.97225 * 15 14 13 17 17 C 1.40746 * 119.88113 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20517 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99535 * 205.18112 * 18 17 16 20 20 C 1.39933 * 120.00350 * 25.17609 * 18 17 16 21 21 N 1.30825 * 119.99839 * 16.78847 * 20 18 17 22 22 Si 1.86795 * 120.00099 * 196.78415 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00286 * 22 20 18 24 24 H 1.48501 * 109.47052 * 210.00152 * 22 20 18 25 25 H 1.48501 * 109.47386 * 330.00160 * 22 20 18 26 26 C 1.38230 * 119.94521 * 325.49584 * 13 12 10 27 27 C 1.38230 * 120.00314 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.46900 * 89.99568 * 1 2 3 29 29 H 1.08994 * 109.46692 * 210.00079 * 1 2 3 30 30 H 1.09003 * 109.47001 * 329.99840 * 1 2 3 31 31 H 1.07999 * 119.99923 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46870 * 269.97651 * 5 4 3 33 33 H 1.09000 * 109.47480 * 29.97547 * 5 4 3 34 34 H 1.08998 * 109.47222 * 149.98111 * 5 4 3 35 35 H 1.07999 * 119.99932 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47140 * 210.00466 * 8 7 6 37 37 H 1.09000 * 109.47236 * 330.00630 * 8 7 6 38 38 H 0.97007 * 120.00001 * 0.02562 * 9 8 7 39 39 H 0.97000 * 119.99825 * 354.85295 * 12 10 9 40 40 H 1.07999 * 119.78897 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.83861 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.05846 * 179.97438 * 16 15 14 43 43 H 0.97001 * 120.00247 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.16519 * 359.97438 * 26 13 12 45 45 H 1.08006 * 119.99749 * 0.04503 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3341 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0002 7 6 3.5806 -1.1971 0.0002 8 6 4.3341 -2.5022 -0.0063 9 7 4.5845 -2.9283 1.3728 10 6 5.2476 -4.0767 1.6135 11 8 5.6385 -4.7588 0.6859 12 7 5.4776 -4.4690 2.8822 13 6 6.0697 -5.7119 3.1340 14 6 6.9309 -5.8649 4.2178 15 6 7.5228 -7.0902 4.4759 16 6 7.2653 -8.1714 3.6633 17 6 6.3970 -8.0316 2.5644 18 6 6.1282 -9.1374 1.7250 19 1 5.8233 -8.9768 0.7015 20 6 6.2573 -10.4397 2.2205 21 7 6.3002 -10.6472 3.5115 22 14 6.3683 -11.8820 1.0386 23 1 7.7917 -12.1358 0.6997 24 1 5.7883 -13.0908 1.6769 25 1 5.6132 -11.5659 -0.2004 26 6 5.7943 -6.7870 2.3099 27 6 2.1982 -1.1971 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.5157 2.8165 -1.0290 33 1 3.7450 3.2622 0.5124 34 1 5.2865 2.3722 0.5127 35 1 5.3517 0.0000 -0.0002 36 1 3.7427 -3.2606 -0.5193 37 1 5.2842 -2.3707 -0.5241 38 1 4.2723 -2.3843 2.1128 39 1 5.2326 -3.8899 3.6208 40 1 7.1387 -5.0227 4.8611 41 1 8.1888 -7.1982 5.3192 42 1 7.7294 -9.1247 3.8683 43 1 6.3893 -11.5499 3.8550 44 1 5.1228 -6.6705 1.4720 45 1 1.6582 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310751176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:43 Heat of formation + Delta-G solvation = 2.816423 kcal Electronic energy + Delta-G solvation = -25456.766433 eV Core-core repulsion = 21824.084321 eV Total energy + Delta-G solvation = -3632.682112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19385 -39.56180 -37.32380 -35.16518 -34.28445 -33.81839 -33.02200 -32.00961 -29.75146 -28.31810 -27.63178 -26.98146 -25.95751 -25.20149 -21.79950 -21.01907 -20.93298 -20.76228 -19.97445 -17.97528 -17.59100 -16.57914 -16.13945 -15.84992 -15.32807 -14.86475 -14.67682 -14.57443 -14.40952 -14.16513 -13.85218 -13.53332 -13.32332 -13.14647 -13.00090 -12.85912 -12.84511 -12.72054 -12.17325 -12.03652 -11.81958 -11.58773 -11.28913 -11.20481 -11.12244 -11.08947 -10.85288 -10.41086 -10.15569 -9.66448 -9.45901 -9.10813 -9.00292 -8.89728 -8.86807 -8.80557 -7.37986 -6.82658 -6.64424 -4.27296 0.98255 1.09220 2.78843 2.93109 3.08903 3.13235 3.18430 3.27149 3.55158 3.77865 4.01448 4.39968 4.48134 4.48733 4.67298 4.71574 4.86554 5.01561 5.03142 5.19418 5.26086 5.26583 5.31302 5.36632 5.54632 5.59802 5.65880 5.78889 5.87262 5.92510 6.24599 6.28470 6.29935 6.38369 6.46223 6.58239 6.73745 6.85335 6.86581 7.10830 7.15740 7.30923 7.41863 7.75516 7.89969 8.06311 8.17654 8.31502 8.50362 8.73167 8.96607 9.04102 9.11292 10.27824 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002239 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.026633 B =12503.668489 C =13228.016046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.086 4.086 5 C -0.114 4.114 6 C -0.106 4.106 7 C -0.095 4.095 8 C 0.181 3.819 9 N -0.747 5.747 10 C 0.698 3.302 11 O -0.566 6.566 12 N -0.681 5.681 13 C 0.170 3.830 14 C -0.263 4.263 15 C -0.092 4.092 16 C -0.174 4.174 17 C 0.120 3.880 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.797 5.797 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.262 1.262 26 C -0.209 4.209 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.394 0.606 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.279 0.721 44 H 0.106 0.894 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 22.064 -3.874 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.086 4.086 5 C -0.171 4.171 6 C -0.125 4.125 7 C -0.095 4.095 8 C 0.057 3.943 9 N -0.405 5.405 10 C 0.399 3.601 11 O -0.442 6.442 12 N -0.328 5.328 13 C 0.077 3.923 14 C -0.285 4.285 15 C -0.111 4.111 16 C -0.193 4.193 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.231 4.231 27 C -0.124 4.124 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.226 0.774 39 H 0.227 0.773 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.980 21.233 -4.608 23.146 hybrid contribution -0.261 -0.078 0.323 0.423 sum -8.241 21.154 -4.284 23.104 Atomic orbital electron populations 1.20797 0.91067 1.02876 1.02415 1.19910 0.96135 0.92987 0.99538 1.20941 0.93513 0.97538 1.01489 1.19901 0.93800 0.95301 0.99642 1.20793 0.99972 0.93954 1.02387 1.20990 0.99925 0.91281 1.00285 1.19910 0.93789 0.94613 1.01234 1.19966 0.99372 0.91885 0.83028 1.45147 1.62457 1.24702 1.08155 1.15965 0.79256 0.81066 0.83855 1.90982 1.55620 1.54827 1.42733 1.42584 1.64513 1.19894 1.05777 1.17221 0.95347 0.82319 0.97366 1.20008 1.07554 0.97862 1.03067 1.20443 0.99141 0.93006 0.98538 1.21333 1.01675 0.97915 0.98412 1.17497 0.88310 0.91238 0.91288 1.19584 1.40540 0.89874 0.98769 0.90389 1.25896 0.92314 1.00600 0.95368 1.69831 1.35740 1.23426 1.13239 0.86311 0.79462 0.79720 0.81200 1.19304 1.20416 1.18629 1.20999 1.06240 0.92504 1.03352 1.21015 0.93437 0.97857 1.00103 0.91111 0.91348 0.91587 0.86181 0.91136 0.91589 0.91411 0.85827 0.90732 0.90824 0.77351 0.77306 0.89403 0.89094 0.86355 0.91026 0.87550 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.74 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -0.95 9.36 -39.58 -0.37 -1.33 16 4 C -0.09 -0.73 5.88 -104.62 -0.62 -1.34 16 5 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 6 C -0.11 -1.00 9.36 -39.59 -0.37 -1.37 16 7 C -0.09 -0.97 5.25 -104.62 -0.55 -1.52 16 8 C 0.18 2.24 5.80 -5.20 -0.03 2.21 16 9 N -0.75 -10.07 5.55 -66.42 -0.37 -10.44 16 10 C 0.70 13.10 8.29 -86.92 -0.72 12.37 16 11 O -0.57 -13.34 14.10 5.29 0.07 -13.27 16 12 N -0.68 -12.65 5.34 -14.27 -0.08 -12.72 16 13 C 0.17 3.97 6.25 -83.76 -0.52 3.45 16 14 C -0.26 -5.95 9.97 -39.10 -0.39 -6.34 16 15 C -0.09 -2.21 10.02 -39.69 -0.40 -2.60 16 16 C -0.17 -4.66 8.69 -38.84 -0.34 -5.00 16 17 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 18 C -0.46 -12.86 9.05 -37.74 -0.34 -13.20 16 19 H 0.08 2.17 7.90 -52.48 -0.41 1.75 16 20 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 21 N -0.80 -21.12 10.94 55.55 0.61 -20.52 16 22 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.21 -5.60 8.39 -38.69 -0.32 -5.92 16 27 C -0.11 -1.02 9.36 -39.58 -0.37 -1.39 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.39 4.22 8.48 -40.82 -0.35 3.87 16 39 H 0.39 5.67 8.84 -40.82 -0.36 5.31 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 43 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 44 H 0.11 2.95 6.49 -52.48 -0.34 2.61 16 45 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -32.42 380.38 -11.38 -43.80 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.40 Total: 12.36 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -5.92 Total: -19.41 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.16 Total: -43.67 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.42 -11.38 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.613 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds