Wall clock time and date at job start Tue Mar 31 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38243 * 120.00003 * 2 1 4 4 C 1.38238 * 119.99839 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99685 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00013 * 359.95707 * 4 3 2 7 7 C 1.38232 * 120.00304 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00193 * 179.69775 * 7 6 4 9 9 N 1.46497 * 109.46949 * 90.00218 * 8 7 6 10 10 C 1.34778 * 120.00337 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99809 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00372 * 180.02562 * 10 9 8 13 13 C 1.39958 * 119.99989 * 174.84904 * 12 10 9 14 14 C 1.39278 * 119.94459 * 145.76896 * 13 12 10 15 15 C 1.38497 * 120.42838 * 180.02562 * 14 13 12 16 16 C 1.37677 * 120.32073 * 359.97225 * 15 14 13 17 17 C 1.40746 * 119.88113 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20517 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99535 * 205.18112 * 18 17 16 20 20 C 1.39933 * 120.00350 * 25.17609 * 18 17 16 21 21 N 1.30825 * 119.99839 * 16.78847 * 20 18 17 22 22 Si 1.86795 * 120.00099 * 196.78415 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00286 * 22 20 18 24 24 H 1.48501 * 109.47052 * 210.00152 * 22 20 18 25 25 H 1.48501 * 109.47386 * 330.00160 * 22 20 18 26 26 C 1.38230 * 119.94521 * 325.49584 * 13 12 10 27 27 C 1.38230 * 120.00314 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.46900 * 89.99568 * 1 2 3 29 29 H 1.08994 * 109.46692 * 210.00079 * 1 2 3 30 30 H 1.09003 * 109.47001 * 329.99840 * 1 2 3 31 31 H 1.07999 * 119.99923 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46870 * 269.97651 * 5 4 3 33 33 H 1.09000 * 109.47480 * 29.97547 * 5 4 3 34 34 H 1.08998 * 109.47222 * 149.98111 * 5 4 3 35 35 H 1.07999 * 119.99932 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47140 * 210.00466 * 8 7 6 37 37 H 1.09000 * 109.47236 * 330.00630 * 8 7 6 38 38 H 0.97007 * 120.00001 * 0.02562 * 9 8 7 39 39 H 0.97000 * 119.99825 * 354.85295 * 12 10 9 40 40 H 1.07999 * 119.78897 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.83861 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.05846 * 179.97438 * 16 15 14 43 43 H 0.97001 * 120.00247 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.16519 * 359.97438 * 26 13 12 45 45 H 1.08006 * 119.99749 * 0.04503 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3341 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0002 7 6 3.5806 -1.1971 0.0002 8 6 4.3341 -2.5022 -0.0063 9 7 4.5845 -2.9283 1.3728 10 6 5.2476 -4.0767 1.6135 11 8 5.6385 -4.7588 0.6859 12 7 5.4776 -4.4690 2.8822 13 6 6.0697 -5.7119 3.1340 14 6 6.9309 -5.8649 4.2178 15 6 7.5228 -7.0902 4.4759 16 6 7.2653 -8.1714 3.6633 17 6 6.3970 -8.0316 2.5644 18 6 6.1282 -9.1374 1.7250 19 1 5.8233 -8.9768 0.7015 20 6 6.2573 -10.4397 2.2205 21 7 6.3002 -10.6472 3.5115 22 14 6.3683 -11.8820 1.0386 23 1 7.7917 -12.1358 0.6997 24 1 5.7883 -13.0908 1.6769 25 1 5.6132 -11.5659 -0.2004 26 6 5.7943 -6.7870 2.3099 27 6 2.1982 -1.1971 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.5157 2.8165 -1.0290 33 1 3.7450 3.2622 0.5124 34 1 5.2865 2.3722 0.5127 35 1 5.3517 0.0000 -0.0002 36 1 3.7427 -3.2606 -0.5193 37 1 5.2842 -2.3707 -0.5241 38 1 4.2723 -2.3843 2.1128 39 1 5.2326 -3.8899 3.6208 40 1 7.1387 -5.0227 4.8611 41 1 8.1888 -7.1982 5.3192 42 1 7.7294 -9.1247 3.8683 43 1 6.3893 -11.5499 3.8550 44 1 5.1228 -6.6705 1.4720 45 1 1.6582 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310751176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:42 Heat of formation + Delta-G solvation = -15.519060 kcal Electronic energy + Delta-G solvation = -25457.561519 eV Core-core repulsion = 21824.084321 eV Total energy + Delta-G solvation = -3633.477198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51416 -40.54606 -39.13232 -36.48591 -35.99775 -34.84436 -34.40981 -33.01981 -31.73617 -29.92724 -28.34914 -27.59660 -27.30118 -26.93886 -23.44162 -22.71958 -21.81402 -21.64381 -21.60801 -19.60926 -19.28389 -17.63663 -17.25720 -17.08174 -16.91295 -16.46111 -16.20813 -16.02136 -15.70233 -15.04228 -14.91481 -14.76154 -14.64575 -14.16712 -14.00073 -13.92189 -13.79567 -13.74403 -13.50320 -13.32428 -13.01078 -12.91811 -12.77268 -12.68406 -12.46153 -12.17464 -12.00177 -11.92300 -11.91616 -11.55246 -11.26635 -11.00122 -10.79943 -10.18038 -9.68077 -9.48810 -9.38124 -8.72036 -8.57772 -6.35880 0.23818 0.41182 0.93774 1.04143 1.36256 1.49579 1.50343 1.74692 2.17131 2.21837 2.74357 2.76169 3.36496 3.58044 3.75492 3.81112 3.91084 4.21382 4.31944 4.41627 4.48379 4.51615 4.59003 4.65340 4.66750 4.70066 4.81766 4.86067 4.98950 5.05426 5.06736 5.10990 5.13494 5.19877 5.22532 5.33020 5.35423 5.37795 5.57876 5.59458 5.68061 5.73047 5.83860 6.06277 6.07376 6.12341 6.19009 6.37747 6.69923 6.95371 7.02078 7.08026 7.57698 8.34390 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002239 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.026633 B =12503.668489 C =13228.016046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.101 4.101 8 C 0.184 3.816 9 N -0.721 5.721 10 C 0.695 3.305 11 O -0.618 6.618 12 N -0.670 5.670 13 C 0.177 3.823 14 C -0.251 4.251 15 C -0.090 4.090 16 C -0.199 4.199 17 C 0.089 3.911 18 C -0.502 4.502 19 H 0.061 0.939 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.982 3.018 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.266 1.266 26 C -0.237 4.237 27 C -0.118 4.118 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.411 0.589 39 H 0.417 0.583 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.289 0.711 44 H 0.082 0.918 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 24.372 -2.870 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.136 4.136 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.134 4.134 7 C -0.102 4.102 8 C 0.061 3.939 9 N -0.378 5.378 10 C 0.396 3.604 11 O -0.497 6.497 12 N -0.318 5.318 13 C 0.083 3.917 14 C -0.273 4.273 15 C -0.109 4.109 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.532 4.532 19 H 0.079 0.921 20 C -0.177 4.177 21 N -0.448 5.448 22 Si 0.802 3.198 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.190 1.190 26 C -0.259 4.259 27 C -0.137 4.137 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.255 0.745 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.419 23.627 -3.557 25.334 hybrid contribution -0.185 -0.580 0.050 0.611 sum -8.605 23.047 -3.507 24.850 Atomic orbital electron populations 1.20839 0.89554 1.03606 1.03078 1.20183 0.97345 0.92685 0.98787 1.21264 0.93603 0.98287 1.00417 1.20196 0.94227 0.95819 0.98688 1.20839 1.00042 0.93013 1.03109 1.21093 1.00247 0.91416 1.00616 1.19672 0.93909 0.93597 1.03020 1.19963 0.99170 0.92873 0.81930 1.44945 1.60457 1.22944 1.09493 1.16169 0.79235 0.81811 0.83187 1.90960 1.57735 1.56753 1.44284 1.42332 1.64057 1.18689 1.06724 1.17280 0.94778 0.83111 0.96503 1.20440 1.05576 0.98684 1.02577 1.20832 0.98952 0.92511 0.98562 1.21303 1.02629 0.98633 0.99353 1.17840 0.89252 0.91987 0.92320 1.19723 1.43401 0.91656 0.98410 0.92095 1.26694 0.91222 1.02629 0.97197 1.69856 1.35548 1.24724 1.14635 0.85220 0.79724 0.76286 0.78521 1.18430 1.18483 1.19001 1.20944 1.07227 0.93759 1.03998 1.21096 0.93274 0.98519 1.00798 0.90418 0.91377 0.90137 0.83954 0.90398 0.90221 0.91136 0.85491 0.92077 0.91536 0.75278 0.74504 0.85019 0.85751 0.87714 0.89996 0.89985 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16 2 C -0.09 -1.39 5.88 -19.87 -0.12 -1.51 16 3 C -0.12 -1.64 9.36 22.27 0.21 -1.43 16 4 C -0.09 -1.32 5.88 -19.87 -0.12 -1.44 16 5 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 6 C -0.12 -2.03 9.36 22.27 0.21 -1.83 16 7 C -0.10 -2.02 5.25 -19.87 -0.10 -2.13 16 8 C 0.18 4.64 5.80 85.63 0.50 5.14 16 9 N -0.72 -19.14 5.55 -482.30 -2.68 -21.82 16 10 C 0.70 26.28 8.29 179.05 1.48 27.77 16 11 O -0.62 -30.39 14.10 -4.00 -0.06 -30.44 16 12 N -0.67 -24.18 5.34 -317.33 -1.70 -25.88 16 13 C 0.18 8.25 6.25 38.09 0.24 8.49 16 14 C -0.25 -10.80 9.97 22.58 0.23 -10.58 16 15 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 16 C -0.20 -10.96 8.69 22.75 0.20 -10.77 16 17 C 0.09 5.26 5.57 -21.31 -0.12 5.14 16 18 C -0.50 -29.91 9.05 23.46 0.21 -29.70 16 19 H 0.06 3.67 7.90 -2.91 -0.02 3.64 16 20 C 0.04 2.01 5.16 85.25 0.44 2.45 16 21 N -0.82 -44.61 10.94 21.82 0.24 -44.37 16 22 Si 0.98 40.96 29.59 68.60 2.03 42.99 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 C -0.24 -13.29 8.39 22.85 0.19 -13.09 16 27 C -0.12 -2.20 9.36 22.27 0.21 -2.00 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 31 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 34 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 38 H 0.41 8.16 8.48 -92.70 -0.79 7.37 16 39 H 0.42 10.95 8.84 -92.71 -0.82 10.13 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.10 5.95 6.17 -2.91 -0.02 5.93 16 43 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 44 H 0.08 4.89 6.49 -2.91 -0.02 4.87 16 45 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -74.36 380.38 2.56 -71.81 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.59 Total: 38.08 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 5.30 Total: -30.36 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -4.14 Total: -92.07 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.06 Total: -30.44 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -74.36 2.56 -71.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.289 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds