Wall clock time and date at job start Tue Mar 31 2020 13:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99757 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00288 * 3 2 1 5 5 H 1.48506 * 109.46958 * 30.00044 * 3 2 1 6 6 H 1.48494 * 109.47049 * 150.00201 * 3 2 1 7 7 C 1.40022 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.41315 * 120.00465 * 359.97438 * 7 2 1 10 10 C 1.40582 * 119.78806 * 179.97438 * 9 7 2 11 11 C 1.38347 * 119.15205 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.67698 * 359.75320 * 11 10 9 13 13 C 1.39763 * 119.49031 * 0.49476 * 12 11 10 14 14 N 1.38827 * 119.58117 * 179.77174 * 13 12 11 15 15 C 1.48562 * 111.00243 * 59.59999 * 14 13 12 16 16 C 1.54379 * 104.59486 * 200.95932 * 15 14 13 17 17 C 1.54266 * 105.05973 * 23.85004 * 16 15 14 18 18 H 1.09003 * 110.32265 * 241.10234 * 17 16 15 19 19 C 1.53006 * 110.31977 * 118.89985 * 17 16 15 20 20 O 1.42898 * 109.47440 * 66.45552 * 19 17 16 21 21 C 1.35896 * 117.00057 * 179.97438 * 20 19 17 22 22 C 1.38736 * 120.05213 * 359.72484 * 21 20 19 23 23 C 1.38147 * 119.93763 * 179.74352 * 22 21 20 24 24 C 1.38264 * 120.06027 * 0.50818 * 23 22 21 25 25 C 1.38272 * 120.10610 * 359.76520 * 24 23 22 26 26 C 1.38132 * 120.05791 * 359.97438 * 25 24 23 27 27 C 1.48562 * 111.00055 * 304.17645 * 14 13 12 28 28 N 1.31974 * 120.83110 * 359.48978 * 13 12 11 29 29 H 0.96999 * 120.00694 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.42520 * 0.02562 * 10 9 7 31 31 H 1.08000 * 120.66238 * 179.97438 * 11 10 9 32 32 H 1.07999 * 120.26036 * 180.26585 * 12 11 10 33 33 H 1.08998 * 110.41528 * 82.17730 * 15 14 13 34 34 H 1.08997 * 110.50874 * 319.78518 * 15 14 13 35 35 H 1.08996 * 110.32596 * 264.95760 * 16 15 14 36 36 H 1.09000 * 110.41377 * 142.79352 * 16 15 14 37 37 H 1.09004 * 109.46382 * 186.45392 * 19 17 16 38 38 H 1.09002 * 109.46740 * 306.44819 * 19 17 16 39 39 H 1.07992 * 120.03016 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.97017 * 180.23318 * 23 22 21 41 41 H 1.08000 * 119.94518 * 179.74590 * 24 23 22 42 42 H 1.08001 * 119.96563 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.02591 * 180.02562 * 26 25 24 44 44 H 1.09000 * 110.41111 * 40.26791 * 27 14 13 45 45 H 1.08989 * 110.41482 * 277.82056 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6527 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6513 -0.0016 11 6 1.3037 -4.8417 -0.0022 12 6 -0.0818 -4.7945 0.0036 13 6 -0.7280 -3.5552 -0.0007 14 7 -2.1154 -3.5057 0.0003 15 6 -2.6715 -4.1834 1.1997 16 6 -4.1267 -4.5250 0.8138 17 6 -4.1298 -4.5818 -0.7278 18 1 -4.8089 -3.8315 -1.1329 19 6 -4.5318 -5.9781 -1.2072 20 8 -5.8941 -6.2286 -0.8558 21 6 -6.4116 -7.4335 -1.2122 22 6 -5.6261 -8.3536 -1.8914 23 6 -6.1531 -9.5798 -2.2480 24 6 -7.4651 -9.8865 -1.9378 25 6 -8.2516 -8.9690 -1.2659 26 6 -7.7279 -7.7435 -0.9024 27 6 -2.6762 -4.2698 -1.1436 28 7 -0.0359 -2.4315 -0.0001 29 1 -0.4851 0.8400 0.0004 30 1 3.0886 -3.6552 -0.0021 31 1 1.8225 -5.7890 -0.0034 32 1 -0.6575 -5.7082 0.0077 33 1 -2.6534 -3.5122 2.0583 34 1 -2.1125 -5.0934 1.4177 35 1 -4.8042 -3.7468 1.1653 36 1 -4.4133 -5.4912 1.2289 37 1 -4.4191 -6.0368 -2.2898 38 1 -3.8916 -6.7228 -0.7343 39 1 -4.6027 -8.1128 -2.1379 40 1 -5.5409 -10.2979 -2.7734 41 1 -7.8764 -10.8441 -2.2210 42 1 -9.2763 -9.2107 -1.0251 43 1 -8.3425 -7.0274 -0.3772 44 1 -2.1174 -5.1935 -1.2943 45 1 -2.6617 -3.6637 -2.0493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324084918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:17 Heat of formation + Delta-G solvation = 38.619190 kcal Electronic energy + Delta-G solvation = -26137.304157 eV Core-core repulsion = 22506.174569 eV Total energy + Delta-G solvation = -3631.129588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36711 -39.39037 -37.82593 -36.98806 -33.75554 -32.51535 -31.22412 -30.52767 -30.09164 -29.25385 -28.44995 -25.83023 -25.21652 -22.91170 -22.26931 -22.14390 -21.43971 -19.99269 -19.81490 -18.35290 -17.51290 -16.63686 -16.20462 -16.13188 -15.66313 -15.11227 -14.89013 -14.64587 -14.47248 -14.14797 -13.80762 -13.65360 -13.36494 -13.14588 -12.87609 -12.58027 -12.30685 -11.97702 -11.93725 -11.74552 -11.61064 -11.49671 -11.14997 -11.06045 -11.03419 -10.94648 -10.75134 -10.55347 -10.53141 -10.30465 -10.01941 -9.36611 -9.23244 -8.38697 -8.34731 -8.21608 -7.55879 -7.30825 -6.35801 -4.55191 1.11297 1.24327 2.60042 2.94806 3.04181 3.08793 3.11442 3.16932 3.58039 3.93742 4.38020 4.60481 4.63385 4.68128 4.77972 4.89112 4.90446 4.93704 5.14970 5.18241 5.30394 5.35251 5.46041 5.48317 5.65594 5.77706 5.80662 5.84351 5.99639 6.04212 6.07439 6.10688 6.19106 6.30332 6.30924 6.34023 6.38654 6.40433 6.57570 6.68346 6.74972 6.85786 7.18805 7.27316 7.34934 7.48812 7.61603 7.71236 8.17052 8.25016 8.67591 8.90582 10.10566 10.30398 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.002320 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.814423 B =12063.943293 C =12673.651684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.426 4.426 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.284 4.284 11 C -0.049 4.049 12 C -0.349 4.349 13 C 0.311 3.689 14 N -0.456 5.456 15 C 0.043 3.957 16 C -0.112 4.112 17 C -0.089 4.089 18 H 0.091 0.909 19 C 0.068 3.932 20 O -0.310 6.310 21 C 0.135 3.865 22 C -0.211 4.211 23 C -0.080 4.080 24 C -0.165 4.165 25 C -0.082 4.082 26 C -0.156 4.156 27 C 0.054 3.946 28 N -0.455 5.455 29 H 0.274 0.726 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.050 0.950 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 -13.382 -2.557 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.161 4.161 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.103 0.897 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.073 4.073 12 C -0.375 4.375 13 C 0.072 3.928 14 N -0.177 5.177 15 C -0.085 4.085 16 C -0.151 4.151 17 C -0.108 4.108 18 H 0.109 0.891 19 C -0.007 4.007 20 O -0.224 6.224 21 C 0.089 3.911 22 C -0.230 4.230 23 C -0.098 4.098 24 C -0.183 4.183 25 C -0.101 4.101 26 C -0.174 4.174 27 C -0.074 4.074 28 N -0.168 5.168 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.068 0.932 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.858 -11.628 -2.465 18.257 hybrid contribution 1.376 -1.169 -0.126 1.811 sum -12.482 -12.797 -2.590 18.063 Atomic orbital electron populations 1.70166 1.06964 1.27921 1.27005 1.26114 0.94969 1.01084 0.93948 0.86345 0.80449 0.80925 0.79241 1.19394 1.20057 1.18568 1.19627 0.94278 0.89307 1.42481 0.89666 1.18486 0.87426 0.92072 0.88520 1.21724 0.98718 0.93522 1.16744 1.20691 0.93640 0.96555 0.96456 1.21488 0.95259 0.97208 1.23536 1.19727 0.88446 0.89188 0.95480 1.62108 1.05643 1.48671 1.01305 1.23120 0.93709 0.97425 0.94199 1.22310 0.96836 1.01713 0.94195 1.21897 0.97479 0.94432 0.97023 0.89073 1.22963 0.80051 0.97818 0.99863 1.86082 1.28892 1.31713 1.75670 1.19089 0.93047 0.85010 0.93918 1.21344 1.00944 0.95715 1.04951 1.20967 0.95359 0.95726 0.97796 1.21047 0.94605 1.00199 1.02465 1.20959 0.99629 0.92703 0.96760 1.20471 0.93313 0.98413 1.05239 1.23016 0.91894 0.97027 0.95471 1.68412 1.06881 1.25475 1.16071 0.91429 0.88300 0.88825 0.89249 0.90201 0.93566 0.90756 0.91335 0.91800 0.91837 0.85385 0.85904 0.86092 0.85526 0.85227 0.93199 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.86 11.46 55.55 0.64 -18.22 16 2 C 0.07 1.67 5.50 -17.35 -0.10 1.58 16 3 Si 0.91 18.57 29.56 -169.99 -5.02 13.54 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.43 -11.40 9.14 -37.74 -0.34 -11.74 16 8 H 0.09 2.12 7.85 -52.48 -0.41 1.70 16 9 C 0.26 7.17 6.55 -85.00 -0.56 6.61 16 10 C -0.28 -7.02 9.83 -38.66 -0.38 -7.40 16 11 C -0.05 -1.10 10.15 -39.39 -0.40 -1.50 16 12 C -0.35 -7.83 8.05 -38.86 -0.31 -8.14 16 13 C 0.31 7.57 5.90 -155.32 -0.92 6.66 16 14 N -0.46 -9.55 5.47 -168.76 -0.92 -10.47 16 15 C 0.04 0.76 6.34 -2.18 -0.01 0.75 16 16 C -0.11 -1.59 6.50 -25.35 -0.16 -1.75 16 17 C -0.09 -1.22 3.35 -89.23 -0.30 -1.52 16 18 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.07 0.81 3.81 37.16 0.14 0.95 16 20 O -0.31 -3.91 9.92 -19.41 -0.19 -4.10 16 21 C 0.14 1.58 6.69 -39.22 -0.26 1.32 16 22 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 23 C -0.08 -0.74 10.04 -39.60 -0.40 -1.13 16 24 C -0.16 -1.40 10.04 -39.56 -0.40 -1.80 16 25 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 26 C -0.16 -1.60 9.99 -39.44 -0.39 -2.00 16 27 C 0.05 0.91 5.88 -2.18 -0.01 0.90 16 28 N -0.46 -12.70 7.89 -10.33 -0.08 -12.78 16 29 H 0.27 6.73 8.29 -40.82 -0.34 6.39 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.09 1.79 6.71 -52.49 -0.35 1.44 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.05 0.81 6.72 -51.93 -0.35 0.46 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.88 7.66 -51.93 -0.40 0.48 16 37 H 0.06 0.68 7.65 -51.93 -0.40 0.29 16 38 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 39 H 0.13 1.24 6.30 -52.49 -0.33 0.90 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.05 0.82 6.18 -51.93 -0.32 0.50 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -30.47 368.37 -11.91 -42.38 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.32 Total: 6.04 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.56 Total: -21.93 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.37 Total: -41.48 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.47 -11.91 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324084918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.000 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds