Wall clock time and date at job start Tue Mar 31 2020 13:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99757 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00288 * 3 2 1 5 5 H 1.48506 * 109.46958 * 30.00044 * 3 2 1 6 6 H 1.48494 * 109.47049 * 150.00201 * 3 2 1 7 7 C 1.40022 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.41315 * 120.00465 * 359.97438 * 7 2 1 10 10 C 1.40582 * 119.78806 * 179.97438 * 9 7 2 11 11 C 1.38347 * 119.15205 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.67698 * 359.75320 * 11 10 9 13 13 C 1.39763 * 119.49031 * 0.49476 * 12 11 10 14 14 N 1.38827 * 119.58117 * 179.77174 * 13 12 11 15 15 C 1.48562 * 111.00243 * 59.59999 * 14 13 12 16 16 C 1.54379 * 104.59486 * 200.95932 * 15 14 13 17 17 C 1.54266 * 105.05973 * 23.85004 * 16 15 14 18 18 H 1.09003 * 110.32265 * 241.10234 * 17 16 15 19 19 C 1.53006 * 110.31977 * 118.89985 * 17 16 15 20 20 O 1.42898 * 109.47440 * 66.45552 * 19 17 16 21 21 C 1.35896 * 117.00057 * 179.97438 * 20 19 17 22 22 C 1.38736 * 120.05213 * 359.72484 * 21 20 19 23 23 C 1.38147 * 119.93763 * 179.74352 * 22 21 20 24 24 C 1.38264 * 120.06027 * 0.50818 * 23 22 21 25 25 C 1.38272 * 120.10610 * 359.76520 * 24 23 22 26 26 C 1.38132 * 120.05791 * 359.97438 * 25 24 23 27 27 C 1.48562 * 111.00055 * 304.17645 * 14 13 12 28 28 N 1.31974 * 120.83110 * 359.48978 * 13 12 11 29 29 H 0.96999 * 120.00694 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.42520 * 0.02562 * 10 9 7 31 31 H 1.08000 * 120.66238 * 179.97438 * 11 10 9 32 32 H 1.07999 * 120.26036 * 180.26585 * 12 11 10 33 33 H 1.08998 * 110.41528 * 82.17730 * 15 14 13 34 34 H 1.08997 * 110.50874 * 319.78518 * 15 14 13 35 35 H 1.08996 * 110.32596 * 264.95760 * 16 15 14 36 36 H 1.09000 * 110.41377 * 142.79352 * 16 15 14 37 37 H 1.09004 * 109.46382 * 186.45392 * 19 17 16 38 38 H 1.09002 * 109.46740 * 306.44819 * 19 17 16 39 39 H 1.07992 * 120.03016 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.97017 * 180.23318 * 23 22 21 41 41 H 1.08000 * 119.94518 * 179.74590 * 24 23 22 42 42 H 1.08001 * 119.96563 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.02591 * 180.02562 * 26 25 24 44 44 H 1.09000 * 110.41111 * 40.26791 * 27 14 13 45 45 H 1.08989 * 110.41482 * 277.82056 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6527 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6513 -0.0016 11 6 1.3037 -4.8417 -0.0022 12 6 -0.0818 -4.7945 0.0036 13 6 -0.7280 -3.5552 -0.0007 14 7 -2.1154 -3.5057 0.0003 15 6 -2.6715 -4.1834 1.1997 16 6 -4.1267 -4.5250 0.8138 17 6 -4.1298 -4.5818 -0.7278 18 1 -4.8089 -3.8315 -1.1329 19 6 -4.5318 -5.9781 -1.2072 20 8 -5.8941 -6.2286 -0.8558 21 6 -6.4116 -7.4335 -1.2122 22 6 -5.6261 -8.3536 -1.8914 23 6 -6.1531 -9.5798 -2.2480 24 6 -7.4651 -9.8865 -1.9378 25 6 -8.2516 -8.9690 -1.2659 26 6 -7.7279 -7.7435 -0.9024 27 6 -2.6762 -4.2698 -1.1436 28 7 -0.0359 -2.4315 -0.0001 29 1 -0.4851 0.8400 0.0004 30 1 3.0886 -3.6552 -0.0021 31 1 1.8225 -5.7890 -0.0034 32 1 -0.6575 -5.7082 0.0077 33 1 -2.6534 -3.5122 2.0583 34 1 -2.1125 -5.0934 1.4177 35 1 -4.8042 -3.7468 1.1653 36 1 -4.4133 -5.4912 1.2289 37 1 -4.4191 -6.0368 -2.2898 38 1 -3.8916 -6.7228 -0.7343 39 1 -4.6027 -8.1128 -2.1379 40 1 -5.5409 -10.2979 -2.7734 41 1 -7.8764 -10.8441 -2.2210 42 1 -9.2763 -9.2107 -1.0251 43 1 -8.3425 -7.0274 -0.3772 44 1 -2.1174 -5.1935 -1.2943 45 1 -2.6617 -3.6637 -2.0493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324084918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:16 Heat of formation + Delta-G solvation = 22.637596 kcal Electronic energy + Delta-G solvation = -26137.997171 eV Core-core repulsion = 22506.174569 eV Total energy + Delta-G solvation = -3631.822602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36851 -40.77411 -39.17377 -38.11184 -35.55857 -33.97691 -32.39421 -31.95050 -31.22353 -30.34157 -30.05323 -27.43509 -26.60873 -24.03917 -23.43894 -23.26361 -22.93326 -21.65023 -20.97624 -19.40045 -19.13653 -17.93347 -17.54014 -16.88712 -16.70534 -16.50822 -16.44053 -16.28351 -15.66060 -15.38783 -15.17524 -14.93238 -14.38349 -14.28092 -14.16772 -13.91261 -13.74720 -13.31644 -13.30986 -13.09225 -12.78056 -12.74798 -12.62372 -12.50238 -12.44703 -12.29348 -12.21096 -11.83493 -11.79114 -11.56725 -11.43546 -11.19047 -10.12888 -10.04613 -9.92728 -9.45679 -9.14412 -9.08077 -8.23189 -6.53992 0.41858 0.52120 0.75290 1.13502 1.39893 1.51154 1.54955 2.12029 2.22026 2.79108 2.87692 2.94901 3.60049 3.62023 3.77656 3.88425 3.96055 4.02034 4.21181 4.24969 4.28313 4.33456 4.34738 4.36037 4.47740 4.53111 4.55499 4.61208 4.72585 4.77054 4.84252 4.86295 4.94619 4.96735 5.00062 5.11339 5.13250 5.22047 5.30954 5.39921 5.51295 5.60867 5.62957 5.78966 5.88444 5.90223 5.91053 6.21715 6.42954 6.46905 6.77927 6.98381 8.21754 8.44448 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.002320 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.814423 B =12063.943293 C =12673.651684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.020 3.980 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.463 4.463 8 H 0.092 0.908 9 C 0.227 3.773 10 C -0.303 4.303 11 C -0.047 4.047 12 C -0.341 4.341 13 C 0.299 3.701 14 N -0.485 5.485 15 C 0.044 3.956 16 C -0.100 4.100 17 C -0.077 4.077 18 H 0.091 0.909 19 C 0.076 3.924 20 O -0.324 6.324 21 C 0.109 3.891 22 C -0.223 4.223 23 C -0.088 4.088 24 C -0.165 4.165 25 C -0.084 4.084 26 C -0.170 4.170 27 C 0.057 3.943 28 N -0.499 5.499 29 H 0.278 0.722 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.134 0.866 44 H 0.057 0.943 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 -15.375 -2.910 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.202 4.202 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.494 4.494 8 H 0.110 0.890 9 C 0.101 3.899 10 C -0.326 4.326 11 C -0.072 4.072 12 C -0.367 4.367 13 C 0.061 3.939 14 N -0.207 5.207 15 C -0.083 4.083 16 C -0.138 4.138 17 C -0.096 4.096 18 H 0.109 0.891 19 C 0.001 3.999 20 O -0.238 6.238 21 C 0.064 3.936 22 C -0.242 4.242 23 C -0.106 4.106 24 C -0.183 4.183 25 C -0.101 4.101 26 C -0.189 4.189 27 C -0.071 4.071 28 N -0.213 5.213 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.170 0.830 43 H 0.152 0.848 44 H 0.075 0.925 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.694 -13.662 -2.819 20.261 hybrid contribution 1.528 -0.749 -0.029 1.702 sum -13.166 -14.411 -2.848 19.726 Atomic orbital electron populations 1.70294 1.08804 1.29052 1.28457 1.27058 0.95747 1.04666 0.92749 0.85135 0.78997 0.75655 0.79469 1.18688 1.19400 1.17708 1.20004 0.94843 0.90287 1.44255 0.88977 1.18980 0.88026 0.93601 0.89264 1.21926 0.99528 0.93627 1.17523 1.21129 0.93840 0.97461 0.94734 1.21807 0.95659 0.97640 1.21562 1.20177 0.89934 0.89227 0.94539 1.62065 1.04155 1.50836 1.03680 1.23137 0.95753 0.96716 0.92672 1.22245 0.94367 1.02746 0.94455 1.21733 0.95329 0.95967 0.96603 0.89081 1.22804 0.80282 0.96343 1.00465 1.86027 1.28876 1.32626 1.76246 1.19346 0.93865 0.85009 0.95373 1.21508 1.01239 0.96245 1.05200 1.21296 0.96074 0.95597 0.97635 1.21431 0.94339 1.01116 1.01446 1.21313 1.00888 0.91951 0.95994 1.20715 0.93103 0.99387 1.05658 1.23001 0.93746 0.96506 0.93828 1.68362 1.07484 1.27631 1.17779 0.91133 0.87059 0.84915 0.86390 0.91824 0.93300 0.90407 0.89449 0.90782 0.91184 0.84980 0.83922 0.83581 0.82986 0.84840 0.92500 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -41.77 11.46 21.84 0.25 -41.52 16 2 C 0.02 1.06 5.50 85.29 0.47 1.53 16 3 Si 0.99 38.88 29.56 68.60 2.03 40.91 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.46 -25.63 9.14 23.46 0.21 -25.41 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.23 12.92 6.55 40.19 0.26 13.19 16 10 C -0.30 -15.11 9.83 22.87 0.22 -14.89 16 11 C -0.05 -2.07 10.15 22.39 0.23 -1.84 16 12 C -0.34 -14.98 8.05 22.73 0.18 -14.80 16 13 C 0.30 14.83 5.90 133.40 0.79 15.62 16 14 N -0.48 -20.63 5.47 -687.83 -3.76 -24.39 16 15 C 0.04 1.56 6.34 86.45 0.55 2.11 16 16 C -0.10 -2.71 6.50 31.49 0.20 -2.51 16 17 C -0.08 -2.04 3.35 -9.89 -0.03 -2.08 16 18 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 19 C 0.08 1.68 3.81 71.98 0.27 1.96 16 20 O -0.32 -7.75 9.92 -92.38 -0.92 -8.67 16 21 C 0.11 2.41 6.69 22.51 0.15 2.56 16 22 C -0.22 -4.34 9.04 22.37 0.20 -4.14 16 23 C -0.09 -1.40 10.04 22.25 0.22 -1.18 16 24 C -0.17 -2.33 10.04 22.28 0.22 -2.10 16 25 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 26 C -0.17 -3.26 9.99 22.36 0.22 -3.03 16 27 C 0.06 1.90 5.88 86.45 0.51 2.41 16 28 N -0.50 -28.84 7.89 -186.59 -1.47 -30.32 16 29 H 0.28 14.19 8.29 -92.71 -0.77 13.43 16 30 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 31 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.12 4.44 6.71 -2.91 -0.02 4.42 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.07 7.66 -2.39 -0.02 2.05 16 37 H 0.07 1.48 7.65 -2.38 -0.02 1.46 16 38 H 0.07 1.45 7.68 -2.39 -0.02 1.44 16 39 H 0.13 2.33 6.30 -2.91 -0.02 2.31 16 40 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.06 1.81 6.18 -2.39 -0.01 1.79 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -68.63 368.37 2.23 -66.39 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.99 Total: 31.22 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 5.12 Total: -33.63 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.98 Total: -96.23 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.92 Total: -8.67 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -68.63 2.23 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324084918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.031 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds